› 8ukf

Electron Microscopy
3.1Å resolution

SARS-CoV-2 Omicron-EG.5 3-RBD down Spike Protein Trimer consensus (S-GSAS-Omicron-EG.5)

Released:
DOI: 10.2210/pdb8ukf/pdb
PDB entry 8ukf coloured by chain, front view.
PDB entry 8ukf coloured by chain, side view.
PDB entry 8ukf coloured by chain, top view.
Source organism: Severe acute respiratory syndrome coronavirus 2
Entry authors: Zhang QE, Acharya P
Related structures: EMD-42353

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo trimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-144650 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Spike glycoprotein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 1284 amino acids
Theoretical weight: 142.2 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 1-1208; Coverage: 95%)
Gene names: 2, S
Sequence domains:

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
1 bound ligand:
Ligand NAG 29 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.1Å
Relevant EMDB volumes: EMD-42353
Expression system: Homo sapiens

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