› 8um6

X-ray diffraction
1.95Å resolution

Structure of copper bound to YcnI W137F

Released:
DOI: 10.2210/pdb8um6/pdb
PDB entry 8um6 coloured by chain, front view.
PDB entry 8um6 coloured by chain, side view.
PDB entry 8um6 coloured by chain, top view.
Source organism: Bacillus subtilis
Primary publication:
Stabilization of a Cu-binding site by a highly conserved tryptophan residue.
de Oliveira Silva YR, Zheng D, Peters SC, Fisher OS
J Inorg Biochem 253 112501 (2024)
PMID: 38342077

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-161110 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Uncharacterized protein YcnI Chains: A, B
Molecule details ›
Chains: A, B
Length: 129 amino acids
Theoretical weight: 14.4 KDa
Source organism: Bacillus subtilis
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: P94431 (Residues: 27-155; Coverage: 73%)
Gene names: BSU03940, ycnI
Sequence domains: Domain of unkown function (DUF1775)

Ligands and Environments

1 bound ligand:
Ligand CU 2 x CU
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: APS BEAMLINE 21-ID-D
Spacegroup: P6322
Unit cell:
a: 90.263Å b: 90.263Å c: 207.508Å
α: 90° β: 90° γ: 120°
R-values:
R R work R free
0.21 0.203 0.239
Expression system: Escherichia coli BL21(DE3)

Quick links