› 8umc

Electron Microscopy
2.5Å resolution

Deinococcus aerius TR0125 C-glucosyl deglycosidase (CGD), cryo-EM

Released:
DOI: 10.2210/pdb8umc/pdb
PDB entry 8umc coloured by chain, front view.
PDB entry 8umc coloured by chain, side view.
PDB entry 8umc coloured by chain, top view.
Source organism: Deinococcus aerius
Primary publication:
Structural and Functional Characterization of a Gene Cluster Responsible for Deglycosylation of C-glucosyl Flavonoids and Xanthonoids by Deinococcus aerius.
Furlanetto V, Kalyani DC, Kostelac A, Puc J, Haltrich D, Hällberg BM, Divne C
J Mol Biol 436 168547 (2024)
PMID: 38508304
Related structures: EMD-42375

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-244693 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Xylose isomerase-like TIM barrel domain-containing protein Chains: A, C
Molecule details ›
Chains: A, C
Length: 347 amino acids
Theoretical weight: 40.55 KDa
Source organism: Deinococcus aerius
Expression system: Escherichia coli B
UniProt:
  • Canonical: A0A2I9DAN1 (Residues: 1-333; Coverage: 100%)
Gene name: DAERI_200053
Sequence domains: Xylose isomerase-like TIM barrel
DUF6379 domain-containing protein Chains: B, D
Molecule details ›
Chains: B, D
Length: 123 amino acids
Theoretical weight: 13.76 KDa
Source organism: Deinococcus aerius
Expression system: Escherichia coli B
UniProt:
  • Canonical: A0A2I9E2I0 (Residues: 1-123; Coverage: 98%)
Gene name: DAERI_200052
Sequence domains: Domain of unknown function (DUF6379)

Ligands and Environments

1 bound ligand:
Ligand MN 2 x MN
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.5Å
Relevant EMDB volumes: EMD-42375
Expression system: Escherichia coli B

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