› 8v3y

Electron Microscopy
3.6Å resolution

CryoEM Structure of Diffocin - postcontracted - Trunk

Released:
DOI: 10.2210/pdb8v3y/pdb
PDB entry 8v3y coloured by chain, front view.
PDB entry 8v3y coloured by chain, side view.
PDB entry 8v3y coloured by chain, top view.
Source organism: Clostridioides difficile
Primary publication:
Atomic structures of a bacteriocin targeting Gram-positive bacteria.
Cai X, He Y, Yu I, Imani A, Scholl D, Miller JF, Zhou ZH
Nat Commun 15 7057 (2024)
PMID: 39152109
Related structures: EMD-42960

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo 30-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-250725 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Phage tail sheath protein Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X, Y, Z, a, b, c, d
Length: 354 amino acids
Theoretical weight: 39.27 KDa
Source organism: Clostridioides difficile
Expression system: Bacillus subtilis
UniProt:
  • Canonical: A0A9Q7ZU73 (Residues: 1-354; Coverage: 100%)
Gene names: KRM00_000612, SAMEA1402406_02043, SAMEA3375112_00264
Sequence domains:

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.6Å
Relevant EMDB volumes: EMD-42960
Expression system: Bacillus subtilis

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