› 8ves

Electron Microscopy
3.22Å resolution

Structure of YicC endoribonuclease bound to an RNA substrate

Released:
DOI: 10.2210/pdb8ves/pdb
PDB entry 8ves coloured by chain, front view.
PDB entry 8ves coloured by chain, side view.
PDB entry 8ves coloured by chain, top view.
Source organisms:
Primary publication:
Structural insights into RNA cleavage by a novel family of bacterial RNases.
Wu R, Ingle S, Barnes SA, Dahlin HR, Khamrui S, Xiang Y, Shi Y, Bechhofer DH, Lazarus MB
Nucleic Acids Res (2024)
PMID: 39180400
Related structures: EMD-43173

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero heptamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-251002 (preferred)
Entry contents:
1 distinct polypeptide molecule
1 distinct RNA molecule
Macromolecules (2 distinct):
Endoribonuclease YicC Chains: A, B, C, D, E, F
Molecule details ›
Chains: A, B, C, D, E, F
Length: 289 amino acids
Theoretical weight: 33.36 KDa
Source organism: Escherichia coli
Expression system: Escherichia coli
UniProt:
  • Canonical: P23839 (Residues: 1-287; Coverage: 100%)
Gene names: JW3619, b3644, orfX, yicC
Sequence domains:
RNA (26-MER) Chain: H
Molecule details ›
Chain: H
Length: 26 nucleotides
Theoretical weight: 8.5 KDa
Source organism: synthetic construct
Expression system: Not provided

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.22Å
Relevant EMDB volumes: EMD-43173
Expression systems:
  • Escherichia coli
  • Not provided

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