› 8vjn

X-ray diffraction
2.31Å resolution

Myxococcus xanthus encapsulin cargo protein EncD in complex with flavin mononucleotide

Released:
DOI: 10.2210/pdb8vjn/pdb
PDB entry 8vjn coloured by chain, front view.
PDB entry 8vjn coloured by chain, side view.
PDB entry 8vjn coloured by chain, top view.
Source organism: Myxococcus xanthus
Primary publication:
Myxococcus xanthus encapsulin cargo protein EncD is a flavin-binding protein with ferric reductase activity.
Eren E, Watts NR, Conway JF, Wingfield PT
Proc Natl Acad Sci U S A 121 e2400426121 (2024)
PMID: 38748579

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-244252 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Encapsulin nanocompartment cargo protein EncD Chains: A, B, C, D
Molecule details ›
Chains: A, B, C, D
Length: 66 amino acids
Theoretical weight: 7.64 KDa
Source organism: Myxococcus xanthus
Expression system: Escherichia coli
UniProt:
  • Canonical: Q1D9P3 (Residues: 1-59; Coverage: 54%)
Gene names: MXAN_2410, encD

Ligands and Environments

1 bound ligand:
Ligand FMN 2 x FMN
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: ALS BEAMLINE 5.0.2
Spacegroup: C2
Unit cell:
a: 87.566Å b: 27.999Å c: 86.469Å
α: 90° β: 96.83° γ: 90°
R-values:
R R work R free
0.188 0.183 0.231
Expression system: Escherichia coli

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