› 8vrv

X-ray diffraction
1.61Å resolution

GII.4c H2-tri HBGA norovirus protruding domain

Released:
DOI: 10.2210/pdb8vrv/pdb
PDB entry 8vrv coloured by chain, front view.
PDB entry 8vrv coloured by chain, side view.
PDB entry 8vrv coloured by chain, top view.
Source organism: Norovirus GII.4
Entry authors: Kher G, Prewitt A, Pancera M, Hansman G

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-495262 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecules (2 distinct):
Capsid protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 306 amino acids
Theoretical weight: 33.67 KDa
Source organism: Norovirus GII.4
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A168DBN0 (Residues: 225-530; Coverage: 57%)
Sequence domains: Calicivirus coat protein C-terminal

Ligands and Environments

Carbohydrate polymer : NEW Components: GAL, FUC
Carbohydrate polymer
2 bound ligands:
Ligand EDO 6 x EDO
Ligand FMT 3 x FMT
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: AUSTRALIAN SYNCHROTRON BEAMLINE MX1
Spacegroup: P212121
Unit cell:
a: 76.666Å b: 90.47Å c: 91.339Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.158 0.156 0.185
Expression system: Escherichia coli

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