2 bound ligands:
NA 301(G)
Environment details ›
Jmol._Canvas2D (Jmol) "_PDBE_JMOL"[x]
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/package.js
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Jmol JavaScript applet _PDBE_JMOL__12052784897651__ initializing
Jmol getValue debug null
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Jmol getValue allowjavascript true
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vwrOptions:
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setting document base to "https://www.ebi.ac.uk/pdbe/entry/pdb/8vvo/ligands"
(C) 2012 Jmol Development
Jmol Version: 14.3.6_2014.08.17b 2014-08-17 17:24
java.vendor: Java2Script (HTML5)
java.version: JSmol 14.3.6_2014.08.14
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Jmol applet _PDBE_JMOL__12052784897651__ ready
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescript.z.js
script 1 started
FileManager.getAtomSetCollectionFromFile(https://www.ebi.ac.uk/pdbe/entry-files/download/8vvo.cif)
FileManager opening 1 https://www.ebi.ac.uk/pdbe/entry-files/download/8vvo.cif
The Resolver thinks MMCif
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s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/CifDataParser.js
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-- required by J.renderbio.BioShapeRenderer
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/Mesh.js
TITLE: Antigen-binding fragments with improved crystal lattice packing and enhanced conformational flexibility at the elbow region as crystallization chaperones.
Setting space group name to Hall:P 2ac 2ab
Setting space group name to HM:P 21 21 21
found biomolecule 1: A,B,E,F
found biomolecule 2: C,D,G
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coresym.z.js
unknown CIF bond order: sing
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Setting space group name to HM:P 21 21 21
Setting space group name to Hall:P 2ac 2ab
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/Tensor.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/Eigen.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/javajs/api/EigenInterface.js
-- required by JU.Eigen
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/EigenSort.js
Time for openFile(*8vvo): 2464 ms
reading 7889 atoms
ModelSet: haveSymmetry:false haveUnitcells:true haveFractionalCoord:false
1 model in this collection. Use getProperty "modelInfo" or getProperty "auxiliaryInfo" to inspect them.
model 1.1 alternative locations: AB
Default Van der Waals type for model set to Jmol
7889 atoms created
ModelSet: autobonding; use autobond=false to not generate bonds automatically
TITLE: Antigen-binding fragments with improved crystal lattice packing and enhanced conformational flexibility at the elbow region as crystallization chaperones.
found biomolecule 1: A,B,E,F
found biomolecule 2: C,D,G
Script completed
Jmol script terminated
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JV/PropertyManager.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coreprop.z.js
-- required by JV.PropertyManager
script 2 started
antialiasDisplay = true
antialiasTranslucent = true
debugScript = false
showScript = 0
chainCaseSensitive = true
measurementUnits = "angstroms"
autobond = true
forceAutoBond = true
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescriptcmd.z.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/Halos.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/corescriptmath.z.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shapesurface/Contact.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coresurface.z.js
-- required by J.shapesurface.Contact
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/shape/MeshCollection.js
-- required by J.shapesurface.Isosurface
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/XmlUtil.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/c/HB.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JU/ContactPair.js
contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;
Contact pairs: 3
Contacts: 0
RasMol pseudo-hbond calculation
0 hydrogen bonds
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/core/coretext.z.js
Script completed
Jmol script terminated
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JV/OutputManagerJS.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/JV/OutputManager.js
-- required by JV.OutputManagerJS
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/render/HalosRenderer.js
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/J/g3d/CircleRenderer.js
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s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/javajs/img/ImageEncoder.js
-- required by javajs.img.Huffman
s://www.ebi.ac.uk/pdbe/software/jmol-future/jsmol/j2s/javajs/api/GenericImageEncoder.js
-- required by javajs.img.ImageEncoder
script 3 started
antialiasDisplay = true
antialiasTranslucent = true
debugScript = false
showScript = 0
chainCaseSensitive = true
measurementUnits = "angstroms"
autobond = true
forceAutoBond = true
contact ID "hb" {environmentAtoms} hbond color TRANSLUCENT 0.2 purple;
Contact pairs: 2
Contacts: 0
RasMol pseudo-hbond calculation
0 hydrogen bonds
Script completed
Jmol script terminated
CL 301(C)
Environment details ›