› › Structure analysis

Cryo-EM structure of phage DEV ejection proteins gp72:gp73

Electron Microscopy
3.1Å resolution
PDB entry 8vxq coloured by chain, front view.
PDB entry 8vxq coloured by chain, side view.
PDB entry 8vxq coloured by chain, top view.
Source organism: Pseudomonas phage vB_PaeP_DEV
Assembly composition:
hetero octadecamer (preferred)
Entry contents: 2 distinct polypeptide molecules

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Assemblies

Assembly 1 (preferred)
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Assembly Name: N4 gp52-like protein and gp72
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Multimeric state: hetero octadecamer
Accessible surface area: 262233.25 Å2
Buried surface area: 68706.53 Å2
Dissociation area: 2,520.62 Å2
Dissociation energy (ΔGdiss): 21.29 kcal/mol
Dissociation entropy (TΔSdiss): 15.15 kcal/mol
Symmetry number: 3
PDBe Complex ID: PDB-CPX-278998

Macromolecules

gp72
Chains: J, K, L, M, N, O, P, Q, R
Length: 521 amino acids
Theoretical weight: 57.18 KDa
Source organism: Pseudomonas phage vB_PaeP_DEV
UniProt:
  • Canonical: A0A2K8HKQ8 (Residues: 1-521; Coverage: 100%)
Gene name: vBPaePDEV_00072
gp72 in PDB entry 8vxq, assembly 1, front view.
gp72 in PDB entry 8vxq, assembly 1, side view.
gp72 in PDB entry 8vxq, assembly 1, top view.
PDBe-KB: UniProt Coverage View: A0A2K8HKQ8  
152150100150200250300350400450500
 
200400MAQEITWRNIGATVSPGSASSMSAGTTGVQQALGALGDIISRQQEMNVNNAKLQREANTQSYLDQVAASTLEQLSNADYRSGLEAQRDAMGMNLDRAATRDAITKQISAQQNQAAATQKFDDMQAEVGQRGIVDQLRTLSAEGRAGEVNQILAEQQLINEGEIRKELTGVQDAIQNRQYRAAGEQRAQAAANRAAEAHSLSMAAGRENLAFTREQRDELRRDRDEAKLVSGTIATTFQDYDESRQAQSEIMRIVGKEVGMPTDDQGMPDMSRASQDQLDAFSNALNEAGVQANTSPTERRNAVLKSLVDAGVSSKGIAQAKQEMELRESLEGLAPQDRTKVEATIGAVNAELDTLQRTATEDYEREVARNPFVEPDKDPLGSVNKIVDKAVKSGFGWEGDRQDLNNMLVDFATNGIKLPDGRTAVVPSKLLEQAFNTTNTWLFKNAGDVEKRIIELMTTDGMTQMREDAPTIRENFLKTVSDIANQKRSNAVKVTRSAEREKGVTMDPTDDLTFALRGRKR
UniProt
A0A2K8HKQ8
Chains
Secondary structure
Flexibility predictions
Interaction interfaces
Sequence conservation
Molecule details ›

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N4 gp52-like protein
Chains: A, B, C, D, E, F, G, H, I
Length: 155 amino acids
Theoretical weight: 16.64 KDa
Source organism: Pseudomonas phage vB_PaeP_DEV
UniProt:
  • Canonical: A0A2K8I0A4 (Residues: 1-155; Coverage: 100%)
Gene name: vBPaePDEV_00073
N4 gp52-like protein in PDB entry 8vxq, assembly 1, front view.
N4 gp52-like protein in PDB entry 8vxq, assembly 1, side view.
N4 gp52-like protein in PDB entry 8vxq, assembly 1, top view.
PDBe-KB: UniProt Coverage View: A0A2K8I0A4  
115520406080100120140
 
50100150MAYPYSDMPFGVELDTSTLGSFGLGGPQTQLQMQMPAVDVNAAASGSGGFMAGFSNIFSRDSMFGGVAPSGAQTGGWVLPALGIGQAVFGAIGANRQQRAARDQLAESRRQFDMNYGAQRQSINTNLEDRQRARVASNPTAYESVDSYMERNRIR
UniProt
A0A2K8I0A4
Chains
Secondary structure
Interaction interfaces
Sequence conservation
Molecule details ›

Search similar proteins

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