› 8wqv

Electron Microscopy
2.7Å resolution

Fe-O nanocluster of form-VIII in the 4-fold channel of Ureaplasma diversum ferritin

Released:
DOI: 10.2210/pdb8wqv/pdb
PDB entry 8wqv coloured by chain, front view.
PDB entry 8wqv coloured by chain, side view.
PDB entry 8wqv coloured by chain, top view.
Source organism: Ureaplasma diversum
Primary publication:
Growth Process of Fe-O Nanoclusters with Different Sizes Biosynthesized by Protein Nanocages.
Wang W, Xi H, Fu D, Ma D, Gong W, Zhao Y, Li X, Wu L, Guo Y, Zhao G, Wang H
J Am Chem Soc 146 11657-11668 (2024)
PMID: 38641862
Related structures: EMD-37755

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo 24-mer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-245852 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Ferritin-like diiron domain-containing protein Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
Molecule details ›
Chains: A, B, C, D, E, F, G, H, I, J, K, L, M, N, O, P, Q, R, S, T, U, V, W, X
Length: 181 amino acids
Theoretical weight: 21.25 KDa
Source organism: Ureaplasma diversum
Expression system: Escherichia coli
UniProt:
  • Canonical: A0A084EX36 (Residues: 1-172; Coverage: 100%)
Gene name: UDIV_5880
Sequence domains: Ferritin-like domain

Ligands and Environments

1 bound ligand:
Ligand FE 24 x FE
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.7Å
Relevant EMDB volumes: EMD-37755
Expression system: Escherichia coli

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