› 8wyj

Electron Microscopy
3.1Å resolution

The global map of Omicron Subvariants Spike with two antibodies

Released:
DOI: 10.2210/pdb8wyj/pdb
PDB entry 8wyj coloured by chain, front view.
PDB entry 8wyj coloured by chain, side view.
PDB entry 8wyj coloured by chain, top view.
Source organisms:
Entry authors: Yan RH, Wang AJ, Yang HN
Related structures: EMD-37930

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero pentadecamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-281524 (preferred)
Entry contents:
5 distinct polypeptide molecules
Macromolecules (5 distinct):
Spike glycoprotein Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 1123 amino acids
Theoretical weight: 124.55 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 17-1147; Coverage: 89%)
Gene names: 2, S
Sequence domains:
SA55-HC Chains: D, H, Q
Molecule details ›
Chains: D, H, Q
Length: 125 amino acids
Theoretical weight: 13.41 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
S309-HC Chains: E, I, S
Molecule details ›
Chains: E, I, S
Length: 127 amino acids
Theoretical weight: 14.01 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
SA55_KC Chains: F, J, R
Molecule details ›
Chains: F, J, R
Length: 106 amino acids
Theoretical weight: 11.65 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
S309-KC Chains: G, K, T
Molecule details ›
Chains: G, K, T
Length: 104 amino acids
Theoretical weight: 11.07 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.1Å
Relevant EMDB volumes: EMD-37930
Expression system: Homo sapiens

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