Function and Biology Details
Reactions catalysed:
Endohydrolysis of RNA in RNA/DNA hybrids. Three different cleavage modes: 1. sequence-specific internal cleavage of RNA. Human immunodeficiency virus type 1 and Moloney murine leukemia virus enzymes prefer to cleave the RNA strand one nucleotide away from the RNA-DNA junction. 2. RNA 5'-end directed cleavage 13-19 nucleotides from the RNA end. 3. DNA 3'-end directed cleavage 15-20 nucleotides away from the primer terminus.
Deoxynucleoside triphosphate + DNA(n) = diphosphate + DNA(n+1)
3'-end directed exonucleolytic cleavage of viral RNA-DNA hybrid
Specific for a P1 residue that is hydrophobic, and P1' variable, but often Pro.
Biochemical function:
- not assigned
Biological process:
- not assigned
Cellular component:
- not assigned
Structure analysis Details
Assembly composition:
hetero trimer (preferred)
Assembly name:
Capsid protein p24 and Pol protein and DNA (preferred)
PDBe Complex ID:
PDB-CPX-247093 (preferred)
Entry contents:
2 distinct polypeptide molecules
1 distinct DNA molecule
1 distinct DNA molecule
Macromolecules (3 distinct):
Pol protein
Molecule details ›
Chains: A, C
Length: 557 amino acids
Theoretical weight: 64.02 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Escherichia coli BL21(DE3)
UniProt:
Sequence domains:
Length: 557 amino acids
Theoretical weight: 64.02 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Escherichia coli BL21(DE3)
UniProt:
- Canonical:
D3XFN5 (Residues: 100-654; Coverage: 84%)
Sequence domains:
p51 RT
Molecule details ›
Chains: B, D
Length: 444 amino acids
Theoretical weight: 51.86 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Escherichia coli BL21(DE3)
UniProt:
Sequence domains:
Length: 444 amino acids
Theoretical weight: 51.86 KDa
Source organism: Human immunodeficiency virus 1
Expression system: Escherichia coli BL21(DE3)
UniProt:
- Canonical: P12497 (Residues: 588-1015; Coverage: 30%)
Sequence domains:
