› 8ygv

Electron Microscopy
3.3Å resolution

F1 domain of Non-catalytic site depleted and epsilon C-terminal domain deleted FoF1-ATPase from Bacillus PS3,nucleotide depleted condition

Released:
DOI: 10.2210/pdb8ygv/pdb
PDB entry 8ygv coloured by chain, front view.
PDB entry 8ygv coloured by chain, side view.
PDB entry 8ygv coloured by chain, top view.
Source organism: Bacillus sp. PS3
Entry authors: Kobayashi R, Nakano A, Mitsuoka K, Yokoyama K
Related structures: EMD-39271

Function and Biology Details

Reaction catalysed: 
ATP + H(2)O + 4 H(+)(Side 1) = ADP + phosphate + 4 H(+)(Side 2)
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero heptamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-286780 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
ATP synthase subunit alpha Chains: A, B, C
Molecule details ›
Chains: A, B, C
Length: 502 amino acids
Theoretical weight: 54.67 KDa
Source organism: Bacillus sp. PS3
Expression system: Escherichia coli K-12
UniProt:
  • Canonical: A0A0J0V8V1 (Residues: 1-502; Coverage: 100%)
Gene names: ABH20_04670, atpA
Sequence domains:
ATP synthase subunit beta Chains: D, E, F
Molecule details ›
Chains: D, E, F
Length: 484 amino acids
Theoretical weight: 53.42 KDa
Source organism: Bacillus sp. PS3
Expression system: Escherichia coli K-12
UniProt:
  • Canonical: A0A0M4U1P9 (Residues: 1-473; Coverage: 100%)
Gene names: atpD, uncD
Sequence domains:
ATP synthase gamma chain Chain: G

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.3Å
Relevant EMDB volumes: EMD-39271
Expression system: Escherichia coli K-12

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