› 8z6q

Electron Microscopy
5.41Å resolution

SARS-CoV-2 XBB.1.16 Spike in complex with CYFN1006-1(S-CYFN1006-1 dimer trimer).

Released:
DOI: 10.2210/pdb8z6q/pdb
PDB entry 8z6q coloured by chain, front view.
PDB entry 8z6q coloured by chain, side view.
PDB entry 8z6q coloured by chain, top view.
Source organisms:
Entry authors: Wang YJ, Sun L
Related structures: EMD-39801

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero octadecamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-285197 (preferred)
Entry contents:
3 distinct polypeptide molecules
Macromolecules (3 distinct):
Fibritin; Spike glycoprotein Chains: A, B, C, J, K, L
Molecule details ›
Chains: A, B, C, J, K, L
Length: 1299 amino acids
Theoretical weight: 143.63 KDa
Source organisms: Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 14-684, 686-1208; Coverage: 94%)
  • Canonical: P10104 (Residues: 458-485; Coverage: 6%)
Gene names: 2, S, wac
Sequence domains:
CYFN1006-1 light chain Chains: D, F, H, M, O, Q
Molecule details ›
Chains: D, F, H, M, O, Q
Length: 215 amino acids
Theoretical weight: 22.73 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
CYFN1006-1 heavy chain Chains: E, G, I, N, P, R

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this EM entry.
Resolution: 5.41Å
Relevant EMDB volumes: EMD-39801
Expression system: Homo sapiens

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