› 8zu2

X-ray diffraction
1.8Å resolution

Crystal Structure of Human Myt1 Kinase domain Bounded with compound 8g

Released:
DOI: 10.2210/pdb8zu2/pdb
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PDB entry 8zu2 coloured by chain, front view.
PDB entry 8zu2 coloured by chain, side view.
PDB entry 8zu2 coloured by chain, top view.
Source organism: Homo sapiens
Primary publication:
Structure-Based Drug Design of 2-Amino-[1,1'-biphenyl]-3-carboxamide Derivatives as Selective PKMYT1 Inhibitors for the Treatment of CCNE1-Amplified Breast Cancer.
Wang C, Fang Y, Zhou Z, Liu Z, Feng F, Wan X, Li Y, Liu S, Ding J, Zhang ZM, Xie H, Lu X
J Med Chem (2024)
PMID: 39163619

Function and Biology Details

Reaction catalysed: 
ATP + a protein = ADP + a phosphoprotein
Biochemical function:
Biological process:
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-189237 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
Membrane-associated tyrosine- and threonine-specific cdc2-inhibitory kinase Chain: A
Molecule details ›
Chain: A
Length: 287 amino acids
Theoretical weight: 31.71 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli
UniProt:
  • Canonical: Q99640 (Residues: 75-361; Coverage: 58%)
Gene names: MYT1, PKMYT1
Sequence domains: Protein kinase domain

Ligands and Environments

2 bound ligands:
Ligand GLY 1 x GLY
Ligand A1D85 1 x A1D85
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this entry.
X-ray source: CAMD BEAMLINE GCPCC
Unit cell:
a: 55.669Å b: 58.555Å c: 99.271Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.181 0.178 0.222
Expression system: Escherichia coli

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