› 9bbh

X-ray diffraction
2Å resolution

Co-crystal structure of human DDB1 bound to fragment UB028670

Released:
DOI: 10.2210/pdb9bbh/pdb
PDB entry 9bbh coloured by chain, front view.
PDB entry 9bbh coloured by chain, side view.
PDB entry 9bbh coloured by chain, top view.
Source organism: Homo sapiens
Entry authors: Zeng H, Dong A, Frommlet A, Seitova A, Loppnau P, Ackloo S, Arrowsmith CH, Edwards AM, Halabelian L, Structural Genomics Consortium (SGC)

Function and Biology Details

Biochemical function:
Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
monomeric (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-172469 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
DNA damage-binding protein 1 Chain: A
Molecule details ›
Chain: A
Length: 1142 amino acids
Theoretical weight: 127.24 KDa
Source organism: Homo sapiens
Expression system: Spodoptera frugiperda
UniProt:
  • Canonical: Q16531 (Residues: 1-1140; Coverage: 100%)
Gene names: DDB1, XAP1
Sequence domains:

Ligands and Environments

4 bound ligands:
Ligand TLA 2 x TLA
Ligand VVP 2 x VVP
Ligand EDO 2 x EDO
Ligand UNX 5 x UNX
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: RIGAKU FR-E SUPERBRIGHT
Spacegroup: P212121
Unit cell:
a: 62.924Å b: 125.268Å c: 168.529Å
α: 90° β: 90° γ: 90°
R-values:
R R work R free
0.19 0.188 0.232
Expression system: Spodoptera frugiperda

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