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80S ribosome bound with angiogenin and complex of eEF1A and Ala-tRNAAla

Source organisms:
Biochemical function: structural constituent of ribosome
Biological process: cytoplasmic translation
Cellular component: ribosome

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EC 4.2.99.18: DNA-(apurinic or apyrimidinic site) lyase

Reaction catalysed:
The C-O-P bond 3' to the apurinic or apyrimidinic site in DNA is broken by a beta-elimination reaction, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
Systematic name:
DNA-(apurinic or apyrimidinic site) 5'-phosphomonoester-lyase
Alternative Name(s):
  • AP endonuclease class I
  • AP lyase
  • AP site-DNA 5'-phosphomonoester-lyase
  • Deoxyribonuclease (apurinic or apyrimidinic)
  • E. coli endonuclease III
  • E.coli endonuclease III
  • Endodeoxyribonuclease (apurinic or apyrimidinic)
  • Micrococcus luteus UV endonuclease
  • Phage-T(4) UV endonuclease
  • Phage-T4 UV endonuclease
  • X-ray endonuclease III

GO terms

Biochemical function:
Biological process:
Cellular component:

Sequence families

Pfam Protein families (Pfam)
PF00400
Domain description: WD domain, G-beta repeat
Occurring in:
  1. Small ribosomal subunit protein RACK1
The deposited structure of PDB entry 9bdp contains 5 copies of Pfam domain PF00400 (WD domain, G-beta repeat) in Small ribosomal subunit protein RACK1. Showing 5 copies in chain XA [auth ARAC].

PF00467
Domain description: KOW motif
Occurring in:
  1. Large ribosomal subunit protein uL24
  2. Large ribosomal subunit protein eL27
  3. 40S ribosomal protein S4
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00467 (KOW motif) in Large ribosomal subunit protein uL24. Showing 1 copy in chain CA [auth AL26].
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00467 (KOW motif) in Large ribosomal subunit protein eL27. Showing 1 copy in chain DA [auth AL27].
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00467 (KOW motif) in 40S ribosomal protein S4. Showing 1 copy in chain CB [auth AS04].

PF01248
Domain description: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Occurring in:
  1. Large ribosomal subunit protein eL8
  2. Large ribosomal subunit protein eL30
  3. Small ribosomal subunit protein eS12
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in Large ribosomal subunit protein eL8. Showing 1 copy in chain K [auth AL08].
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in Large ribosomal subunit protein eL30. Showing 1 copy in chain GA [auth AL30].
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01248 (Ribosomal protein L7Ae/L30e/S12e/Gadd45 family) in Small ribosomal subunit protein eS12. Showing 1 copy in chain KB [auth AS12].

PF00318
Domain description: Ribosomal protein S2
Occurring in:
  1. 40S ribosomal protein SA
The deposited structure of PDB entry 9bdp contains 2 copies of Pfam domain PF00318 (Ribosomal protein S2) in 40S ribosomal protein SA. Showing 2 copies in chain YA [auth AS00].

PF00347
Domain description: Ribosomal protein L6
Occurring in:
  1. Large ribosomal subunit protein uL6
The deposited structure of PDB entry 9bdp contains 2 copies of Pfam domain PF00347 (Ribosomal protein L6) in Large ribosomal subunit protein uL6. Showing 2 copies in chain L [auth AL09].

PF22594
Domain description: GTP-eEF1A C-terminal domain-like
Occurring in:
  1. Elongation factor 1-alpha
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF22594 (GTP-eEF1A C-terminal domain-like) in Elongation factor 1-alpha. Showing 1 copy in chain DC [auth EF1A].

PF03144
Domain description: Elongation factor Tu domain 2
Occurring in:
  1. Elongation factor 1-alpha
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF03144 (Elongation factor Tu domain 2) in Elongation factor 1-alpha. Showing 1 copy in chain DC [auth EF1A].

PF00009
Domain description: Elongation factor Tu GTP binding domain
Occurring in:
  1. Elongation factor 1-alpha
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00009 (Elongation factor Tu GTP binding domain) in Elongation factor 1-alpha. Showing 1 copy in chain DC [auth EF1A].

PF04758
Domain description: Ribosomal protein S30
Occurring in:
  1. Small ribosomal subunit protein eS30
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF04758 (Ribosomal protein S30) in Small ribosomal subunit protein eS30. Showing 1 copy in chain CC [auth AS30].

PF00253
Domain description: Ribosomal protein S14p/S29e
Occurring in:
  1. Small ribosomal subunit protein uS14
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00253 (Ribosomal protein S14p/S29e) in Small ribosomal subunit protein uS14. Showing 1 copy in chain BC [auth AS29].

PF01200
Domain description: Ribosomal protein S28e
Occurring in:
  1. Small ribosomal subunit protein eS28
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01200 (Ribosomal protein S28e) in Small ribosomal subunit protein eS28. Showing 1 copy in chain AC [auth AS28].

PF01667
Domain description: Ribosomal protein S27
Occurring in:
  1. Small ribosomal subunit protein eS27
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01667 (Ribosomal protein S27) in Small ribosomal subunit protein eS27. Showing 1 copy in chain ZB [auth AS27].

PF01283
Domain description: Ribosomal protein S26e
Occurring in:
  1. Small ribosomal subunit protein eS26
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01283 (Ribosomal protein S26e) in Small ribosomal subunit protein eS26. Showing 1 copy in chain YB [auth AS26].

PF01282
Domain description: Ribosomal protein S24e
Occurring in:
  1. 40S ribosomal protein S24
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01282 (Ribosomal protein S24e) in 40S ribosomal protein S24. Showing 1 copy in chain WB [auth AS24].

PF00164
Domain description: Ribosomal protein S12/S23
Occurring in:
  1. Small ribosomal subunit protein uS12
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00164 (Ribosomal protein S12/S23) in Small ribosomal subunit protein uS12. Showing 1 copy in chain VB [auth AS23].

PF00410
Domain description: Ribosomal protein S8
Occurring in:
  1. Small ribosomal subunit protein uS8
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00410 (Ribosomal protein S8) in Small ribosomal subunit protein uS8. Showing 1 copy in chain UB [auth AS22].

PF01249
Domain description: Ribosomal protein S21e
Occurring in:
  1. Small ribosomal subunit protein eS21
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01249 (Ribosomal protein S21e ) in Small ribosomal subunit protein eS21. Showing 1 copy in chain TB [auth AS21].

PF00338
Domain description: Ribosomal protein S10p/S20e
Occurring in:
  1. Small ribosomal subunit protein uS10
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00338 (Ribosomal protein S10p/S20e) in Small ribosomal subunit protein uS10. Showing 1 copy in chain SB [auth AS20].

PF01090
Domain description: Ribosomal protein S19e
Occurring in:
  1. Small ribosomal subunit protein eS19
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01090 (Ribosomal protein S19e) in Small ribosomal subunit protein eS19. Showing 1 copy in chain RB [auth AS19].

PF00416
Domain description: Ribosomal protein S13/S18
Occurring in:
  1. Small ribosomal subunit protein uS13
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00416 (Ribosomal protein S13/S18) in Small ribosomal subunit protein uS13. Showing 1 copy in chain QB [auth AS18].

PF00833
Domain description: Ribosomal S17
Occurring in:
  1. Small ribosomal subunit protein eS17
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00833 (Ribosomal S17) in Small ribosomal subunit protein eS17. Showing 1 copy in chain PB [auth AS17].

PF00380
Domain description: Ribosomal protein S9/S16
Occurring in:
  1. Small ribosomal subunit protein uS9
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00380 (Ribosomal protein S9/S16) in Small ribosomal subunit protein uS9. Showing 1 copy in chain OB [auth AS16].

PF00203
Domain description: Ribosomal protein S19
Occurring in:
  1. Small ribosomal subunit protein uS19
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00203 (Ribosomal protein S19) in Small ribosomal subunit protein uS19. Showing 1 copy in chain NB [auth AS15].

PF00411
Domain description: Ribosomal protein S11
Occurring in:
  1. Small ribosomal subunit protein uS11
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00411 (Ribosomal protein S11) in Small ribosomal subunit protein uS11. Showing 1 copy in chain MB [auth AS14].

PF00312
Domain description: Ribosomal protein S15
Occurring in:
  1. Small ribosomal subunit protein uS15
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00312 (Ribosomal protein S15) in Small ribosomal subunit protein uS15. Showing 1 copy in chain LB [auth AS13].

PF08069
Domain description: Ribosomal S13/S15 N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS15
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF08069 (Ribosomal S13/S15 N-terminal domain) in Small ribosomal subunit protein uS15. Showing 1 copy in chain LB [auth AS13].

PF00366
Domain description: Ribosomal protein S17
Occurring in:
  1. Small ribosomal subunit protein uS17
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00366 (Ribosomal protein S17) in Small ribosomal subunit protein uS17. Showing 1 copy in chain JB [auth AS11].

PF16205
Domain description: Ribosomal_S17 N-terminal
Occurring in:
  1. Small ribosomal subunit protein uS17
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF16205 (Ribosomal_S17 N-terminal) in Small ribosomal subunit protein uS17. Showing 1 copy in chain JB [auth AS11].

PF03501
Domain description: Plectin/S10 domain
Occurring in:
  1. Small ribosomal subunit protein eS10
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF03501 (Plectin/S10 domain) in Small ribosomal subunit protein eS10. Showing 1 copy in chain IB [auth AS10].

PF01479
Domain description: S4 domain
Occurring in:
  1. Small ribosomal subunit protein uS4
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01479 (S4 domain) in Small ribosomal subunit protein uS4. Showing 1 copy in chain HB [auth AS09].

PF00163
Domain description: Ribosomal protein S4/S9 N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS4
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00163 (Ribosomal protein S4/S9 N-terminal domain) in Small ribosomal subunit protein uS4. Showing 1 copy in chain HB [auth AS09].

PF01201
Domain description: Ribosomal protein S8e
Occurring in:
  1. Small ribosomal subunit protein eS8
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01201 (Ribosomal protein S8e) in Small ribosomal subunit protein eS8. Showing 1 copy in chain GB [auth AS08].

PF01092
Domain description: Ribosomal protein S6e
Occurring in:
  1. Small ribosomal subunit protein eS6
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01092 (Ribosomal protein S6e) in Small ribosomal subunit protein eS6. Showing 1 copy in chain EB [auth AS06].

PF00177
Domain description: Ribosomal protein S7p/S5e
Occurring in:
  1. Small ribosomal subunit protein uS7
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00177 (Ribosomal protein S7p/S5e) in Small ribosomal subunit protein uS7. Showing 1 copy in chain DB [auth AS05].

PF16121
Domain description: 40S ribosomal protein S4 C-terminus
Occurring in:
  1. 40S ribosomal protein S4
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF16121 (40S ribosomal protein S4 C-terminus) in 40S ribosomal protein S4. Showing 1 copy in chain CB [auth AS04].

PF00900
Domain description: Ribosomal family S4e
Occurring in:
  1. 40S ribosomal protein S4
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00900 (Ribosomal family S4e) in 40S ribosomal protein S4. Showing 1 copy in chain CB [auth AS04].

PF08071
Domain description: RS4NT (NUC023) domain
Occurring in:
  1. 40S ribosomal protein S4
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF08071 (RS4NT (NUC023) domain) in 40S ribosomal protein S4. Showing 1 copy in chain CB [auth AS04].

PF00189
Domain description: Ribosomal protein S3, C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS3
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00189 (Ribosomal protein S3, C-terminal domain) in Small ribosomal subunit protein uS3. Showing 1 copy in chain BB [auth AS03].

PF07650
Domain description: KH domain
Occurring in:
  1. Small ribosomal subunit protein uS3
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF07650 (KH domain) in Small ribosomal subunit protein uS3. Showing 1 copy in chain BB [auth AS03].

PF03719
Domain description: Ribosomal protein S5, C-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS5
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF03719 (Ribosomal protein S5, C-terminal domain) in Small ribosomal subunit protein uS5. Showing 1 copy in chain AB [auth AS02].

PF00333
Domain description: Ribosomal protein S5, N-terminal domain
Occurring in:
  1. Small ribosomal subunit protein uS5
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00333 (Ribosomal protein S5, N-terminal domain) in Small ribosomal subunit protein uS5. Showing 1 copy in chain AB [auth AS02].

PF01015
Domain description: Ribosomal S3Ae family
Occurring in:
  1. Small ribosomal subunit protein eS1
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01015 (Ribosomal S3Ae family) in Small ribosomal subunit protein eS1. Showing 1 copy in chain ZA [auth AS01].

PF00074
Domain description: Pancreatic ribonuclease
Occurring in:
  1. Angiogenin
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00074 (Pancreatic ribonuclease) in Angiogenin. Showing 1 copy in chain WA [auth ANG].

PF17777
Domain description: Insertion domain in 60S ribosomal protein L10P
Occurring in:
  1. Large ribosomal subunit protein uL10
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF17777 (Insertion domain in 60S ribosomal protein L10P) in Large ribosomal subunit protein uL10. Showing 1 copy in chain VA [auth ALP0].

PF00466
Domain description: Ribosomal protein L10
Occurring in:
  1. Large ribosomal subunit protein uL10
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00466 (Ribosomal protein L10) in Large ribosomal subunit protein uL10. Showing 1 copy in chain VA [auth ALP0].

PF01778
Domain description: Ribosomal L28e protein family
Occurring in:
  1. Large ribosomal subunit protein eL28
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01778 (Ribosomal L28e protein family) in Large ribosomal subunit protein eL28. Showing 1 copy in chain UA [auth ALNW].

PF01780
Domain description: Ribosomal L37ae protein family
Occurring in:
  1. Large ribosomal subunit protein eL43
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01780 (Ribosomal L37ae protein family) in Large ribosomal subunit protein eL43. Showing 1 copy in chain TA [auth AL43].

PF00935
Domain description: Ribosomal protein L44
Occurring in:
  1. Large ribosomal subunit protein eL42
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00935 (Ribosomal protein L44) in Large ribosomal subunit protein eL42. Showing 1 copy in chain SA [auth AL42].

PF05162
Domain description: Ribosomal protein L41
Occurring in:
  1. Small ribosomal subunit protein eS32
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF05162 (Ribosomal protein L41) in Small ribosomal subunit protein eS32. Showing 1 copy in chain RA [auth AL41].

PF00832
Domain description: Ribosomal L39 protein
Occurring in:
  1. Large ribosomal subunit protein eL39
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00832 (Ribosomal L39 protein) in Large ribosomal subunit protein eL39. Showing 1 copy in chain PA [auth AL39].

PF01781
Domain description: Ribosomal L38e protein family
Occurring in:
  1. Large ribosomal subunit protein eL38
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01781 (Ribosomal L38e protein family) in Large ribosomal subunit protein eL38. Showing 1 copy in chain OA [auth AL38].

PF01907
Domain description: Ribosomal protein L37e
Occurring in:
  1. Large ribosomal subunit protein eL37
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01907 (Ribosomal protein L37e) in Large ribosomal subunit protein eL37. Showing 1 copy in chain NA [auth AL37].

PF01158
Domain description: Ribosomal protein L36e
Occurring in:
  1. Large ribosomal subunit protein eL36
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01158 (Ribosomal protein L36e) in Large ribosomal subunit protein eL36. Showing 1 copy in chain MA [auth AL36].

PF00831
Domain description: Ribosomal L29 protein
Occurring in:
  1. Large ribosomal subunit protein uL29
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00831 (Ribosomal L29 protein) in Large ribosomal subunit protein uL29. Showing 1 copy in chain LA [auth AL35].

PF01199
Domain description: Ribosomal protein L34e
Occurring in:
  1. Large ribosomal subunit protein eL34
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01199 (Ribosomal protein L34e) in Large ribosomal subunit protein eL34. Showing 1 copy in chain KA [auth AL34].

PF01247
Domain description: Ribosomal protein L35Ae
Occurring in:
  1. Large ribosomal subunit protein eL33
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01247 (Ribosomal protein L35Ae) in Large ribosomal subunit protein eL33. Showing 1 copy in chain JA [auth AL33].

PF01655
Domain description: Ribosomal protein L32
Occurring in:
  1. Large ribosomal subunit protein eL32
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01655 (Ribosomal protein L32) in Large ribosomal subunit protein eL32. Showing 1 copy in chain IA [auth AL32].

PF01198
Domain description: Ribosomal protein L31e
Occurring in:
  1. Large ribosomal subunit protein eL31
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01198 (Ribosomal protein L31e) in Large ribosomal subunit protein eL31. Showing 1 copy in chain HA [auth AL31].

PF01779
Domain description: Ribosomal L29e protein family
Occurring in:
  1. Large ribosomal subunit protein eL29
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01779 (Ribosomal L29e protein family) in Large ribosomal subunit protein eL29. Showing 1 copy in chain FA [auth AL29].

PF00828
Domain description: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Occurring in:
  1. Large ribosomal subunit protein uL15
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00828 (Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A) in Large ribosomal subunit protein uL15. Showing 1 copy in chain EA [auth AL28].

PF01777
Domain description: Ribosomal L27e protein family
Occurring in:
  1. Large ribosomal subunit protein eL27
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01777 (Ribosomal L27e protein family) in Large ribosomal subunit protein eL27. Showing 1 copy in chain DA [auth AL27].

PF16906
Domain description: Ribosomal proteins L26 eukaryotic, L24P archaeal
Occurring in:
  1. Large ribosomal subunit protein uL24
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF16906 (Ribosomal proteins L26 eukaryotic, L24P archaeal) in Large ribosomal subunit protein uL24. Showing 1 copy in chain CA [auth AL26].

PF00276
Domain description: Ribosomal protein L23
Occurring in:
  1. Large ribosomal subunit protein uL23
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00276 (Ribosomal protein L23) in Large ribosomal subunit protein uL23. Showing 1 copy in chain BA [auth AL25].

PF03939
Domain description: Ribosomal protein L23, N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL23
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF03939 (Ribosomal protein L23, N-terminal domain) in Large ribosomal subunit protein uL23. Showing 1 copy in chain BA [auth AL25].

PF01246
Domain description: Ribosomal protein L24e
Occurring in:
  1. Large ribosomal subunit protein eL24
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01246 (Ribosomal protein L24e) in Large ribosomal subunit protein eL24. Showing 1 copy in chain AA [auth AL24].

PF00238
Domain description: Ribosomal protein L14p/L23e
Occurring in:
  1. Large ribosomal subunit protein uL14
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00238 (Ribosomal protein L14p/L23e) in Large ribosomal subunit protein uL14. Showing 1 copy in chain Z [auth AL23].

PF01776
Domain description: Ribosomal L22e protein family
Occurring in:
  1. Large ribosomal subunit protein eL22
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01776 (Ribosomal L22e protein family) in Large ribosomal subunit protein eL22. Showing 1 copy in chain Y [auth AL22].

PF01157
Domain description: Ribosomal protein L21e
Occurring in:
  1. Large ribosomal subunit protein eL21
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01157 (Ribosomal protein L21e) in Large ribosomal subunit protein eL21. Showing 1 copy in chain X [auth AL21].

PF01775
Domain description: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Occurring in:
  1. Large ribosomal subunit protein eL20
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01775 (Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A) in Large ribosomal subunit protein eL20. Showing 1 copy in chain W [auth AL20].

PF01280
Domain description: Ribosomal protein L19e
Occurring in:
  1. Large ribosomal subunit protein eL19
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01280 (Ribosomal protein L19e) in Large ribosomal subunit protein eL19. Showing 1 copy in chain V [auth AL19].

PF17135
Domain description: Ribosomal protein 60S L18 and 50S L18e
Occurring in:
  1. Large ribosomal subunit protein eL18
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF17135 (Ribosomal protein 60S L18 and 50S L18e) in Large ribosomal subunit protein eL18. Showing 1 copy in chain U [auth AL18].

PF00237
Domain description: Ribosomal protein L22p/L17e
Occurring in:
  1. Large ribosomal subunit protein uL22
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00237 (Ribosomal protein L22p/L17e) in Large ribosomal subunit protein uL22. Showing 1 copy in chain T [auth AL17].

PF00827
Domain description: Ribosomal L15
Occurring in:
  1. Large ribosomal subunit protein eL15
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00827 (Ribosomal L15) in Large ribosomal subunit protein eL15. Showing 1 copy in chain R [auth AL15].

PF01929
Domain description: Ribosomal protein L14
Occurring in:
  1. Large ribosomal subunit protein eL14
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01929 (Ribosomal protein L14) in Large ribosomal subunit protein eL14. Showing 1 copy in chain Q [auth AL14].

PF01294
Domain description: Ribosomal protein L13e
Occurring in:
  1. Large ribosomal subunit protein eL13
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01294 (Ribosomal protein L13e) in Large ribosomal subunit protein eL13. Showing 1 copy in chain P [auth AL13].

PF00298
Domain description: Ribosomal protein L11, RNA binding domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00298 (Ribosomal protein L11, RNA binding domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain O [auth AL12].

PF03946
Domain description: Ribosomal protein L11, N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL11
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF03946 (Ribosomal protein L11, N-terminal domain) in Large ribosomal subunit protein uL11. Showing 1 copy in chain O [auth AL12].

PF00673
Domain description: ribosomal L5P family C-terminus
Occurring in:
  1. Large ribosomal subunit protein uL5
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00673 (ribosomal L5P family C-terminus) in Large ribosomal subunit protein uL5. Showing 1 copy in chain N [auth AL11].

PF00281
Domain description: Ribosomal protein L5
Occurring in:
  1. Large ribosomal subunit protein uL5
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00281 (Ribosomal protein L5) in Large ribosomal subunit protein uL5. Showing 1 copy in chain N [auth AL11].

PF00252
Domain description: Ribosomal protein L16p/L10e
Occurring in:
  1. Large ribosomal subunit protein uL16
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00252 (Ribosomal protein L16p/L10e) in Large ribosomal subunit protein uL16. Showing 1 copy in chain M [auth AL10].

PF00327
Domain description: Ribosomal protein L30p/L7e
Occurring in:
  1. Large ribosomal subunit protein uL30
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00327 (Ribosomal protein L30p/L7e) in Large ribosomal subunit protein uL30. Showing 1 copy in chain J [auth AL07].

PF08079
Domain description: Ribosomal L30 N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL30
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF08079 (Ribosomal L30 N-terminal domain) in Large ribosomal subunit protein uL30. Showing 1 copy in chain J [auth AL07].

PF01159
Domain description: Ribosomal protein L6e
Occurring in:
  1. Large ribosomal subunit protein eL6
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF01159 (Ribosomal protein L6e ) in Large ribosomal subunit protein eL6. Showing 1 copy in chain I [auth AL06].

PF03868
Domain description: Ribosomal protein L6, N-terminal domain
Occurring in:
  1. Large ribosomal subunit protein eL6
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF03868 (Ribosomal protein L6, N-terminal domain) in Large ribosomal subunit protein eL6. Showing 1 copy in chain I [auth AL06].

PF14374
Domain description: 60S ribosomal protein L4 C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL4
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF14374 (60S ribosomal protein L4 C-terminal domain) in Large ribosomal subunit protein uL4. Showing 1 copy in chain G [auth AL04].

PF00573
Domain description: Ribosomal protein L4/L1 family
Occurring in:
  1. Large ribosomal subunit protein uL4
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00573 (Ribosomal protein L4/L1 family) in Large ribosomal subunit protein uL4. Showing 1 copy in chain G [auth AL04].

PF00297
Domain description: Ribosomal protein L3
Occurring in:
  1. Large ribosomal subunit protein uL3
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00297 (Ribosomal protein L3) in Large ribosomal subunit protein uL3. Showing 1 copy in chain F [auth AL03].

PF03947
Domain description: Ribosomal Proteins L2, C-terminal domain
Occurring in:
  1. Large ribosomal subunit protein uL2
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF03947 (Ribosomal Proteins L2, C-terminal domain) in Large ribosomal subunit protein uL2. Showing 1 copy in chain E [auth AL02].

PF00181
Domain description: Ribosomal Proteins L2, RNA binding domain
Occurring in:
  1. Large ribosomal subunit protein uL2
The deposited structure of PDB entry 9bdp contains 1 copy of Pfam domain PF00181 (Ribosomal Proteins L2, RNA binding domain) in Large ribosomal subunit protein uL2. Showing 1 copy in chain E [auth AL02].

Rfam RNA families (Rfam)
RF01960
Domain description: Eukaryotic small subunit ribosomal RNA
Occurring in:
  1. 18S Ribosomal RNA
The deposited structure of PDB entry 9bdp contains 1 copy of Rfam domain RF01960 (Eukaryotic small subunit ribosomal RNA) in 18S Ribosomal RNA. Showing 1 copy in chain A [auth A18S].

RF02543
Domain description: Eukaryotic large subunit ribosomal RNA
Occurring in:
  1. 28S ribosomal RNA
The deposited structure of PDB entry 9bdp contains 1 copy of Rfam domain RF02543 (Eukaryotic large subunit ribosomal RNA) in 28S ribosomal RNA. Showing 1 copy in chain B [auth A28S].

RF00002
Domain description: 5.8S ribosomal RNA
Occurring in:
  1. 5.8S ribosomal RNA
The deposited structure of PDB entry 9bdp contains 1 copy of Rfam domain RF00002 (5.8S ribosomal RNA) in 5.8S ribosomal RNA. Showing 1 copy in chain C [auth A58S].

RF00001
Domain description: 5S ribosomal RNA
Occurring in:
  1. 5S ribosomal RNA
The deposited structure of PDB entry 9bdp contains 1 copy of Rfam domain RF00001 (5S ribosomal RNA) in 5S ribosomal RNA. Showing 1 copy in chain D [auth A5S].

RF00005
Domain description: tRNA
Occurring in:
  1. tRNAfMet
  2. tRNAAla
The deposited structure of PDB entry 9bdp contains 2 copies of Rfam domain RF00005 (tRNA) in tRNAfMet. Showing 1 copy in chain EC [auth ETRN].
The deposited structure of PDB entry 9bdp contains 1 copy of Rfam domain RF00005 (tRNA) in tRNAAla. Showing 1 copy in chain HC [auth TIRN].

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