› 9bh5

Electron Microscopy
2.63Å resolution

High-resolution C. elegans 80S ribosome structure - class 1

Released:
DOI: 10.2210/pdb9bh5/pdb
PDB entry 9bh5 coloured by chain, front view.
PDB entry 9bh5 coloured by chain, side view.
PDB entry 9bh5 coloured by chain, top view.
Source organism: Caenorhabditis elegans
Entry authors: Sehgal E, Serrao VHB, Arribere J
Related structures: EMD-44533

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero 80-mer (preferred)
PDBe Complex ID:
PDB-CPX-250902 (preferred)
Entry contents:
73 distinct polypeptide molecules
6 distinct RNA molecules
Macromolecules (79 distinct):
Small ribosomal subunit protein uS3 Chain: AD
Molecule details ›
Chain: AD
Length: 247 amino acids
Theoretical weight: 27.36 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P48152 (Residues: 1-247; Coverage: 100%)
Gene names: C23G10.3, rps-3
Sequence domains:
Small ribosomal subunit protein eS1 Chain: AB
Molecule details ›
Chain: AB
Length: 257 amino acids
Theoretical weight: 29.01 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P48154 (Residues: 1-257; Coverage: 100%)
Gene names: F56F3.5, rps-1
Sequence domains: Ribosomal S3Ae family
Small ribosomal subunit protein uS5 Chain: AC
Molecule details ›
Chain: AC
Length: 272 amino acids
Theoretical weight: 29.01 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P51403 (Residues: 1-272; Coverage: 100%)
Gene names: C49H3.11, rps-2
Sequence domains:
Small ribosomal subunit protein eS4 Chain: AE
Molecule details ›
Chain: AE
Length: 259 amino acids
Theoretical weight: 29.1 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q9N3X2 (Residues: 1-259; Coverage: 100%)
Gene names: Y43B11AR.4, rps-4
Sequence domains:
Small ribosomal subunit protein eS17 Chain: AR
Molecule details ›
Chain: AR
Length: 130 amino acids
Theoretical weight: 14.97 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O01692 (Residues: 1-130; Coverage: 100%)
Gene names: T08B2.10, rps-17
Sequence domains: Ribosomal S17
Plectin/eS10 N-terminal domain-containing protein Chain: AK
Molecule details ›
Chain: AK
Length: 149 amino acids
Theoretical weight: 16.9 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O01869 (Residues: 1-149; Coverage: 100%)
Gene names: CELE_D1007.6, D1007.6, rps-10
Sequence domains: Plectin/S10 domain
Ribosomal Protein, Small subunit Chain: AW
Molecule details ›
Chain: AW
Length: 130 amino acids
Theoretical weight: 14.76 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O17218 (Residues: 1-130; Coverage: 100%)
Gene names: CELE_F53A3.3, F53A3.3, rps-15a, rps-22
Sequence domains: Ribosomal protein S8
Small ribosomal subunit protein uS13 Chain: AS
Molecule details ›
Chain: AS
Length: 154 amino acids
Theoretical weight: 17.81 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O18240 (Residues: 1-154; Coverage: 100%)
Gene names: CELE_Y57G11C.16, Y57G11C.16, rps-18
Sequence domains: Ribosomal protein S13/S18
Small ribosomal subunit protein eS19 Chain: AT
Molecule details ›
Chain: AT
Length: 146 amino acids
Theoretical weight: 16.36 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O18650 (Residues: 1-146; Coverage: 100%)
Gene names: T05F1.3, rps-19
Sequence domains: Ribosomal protein S19e
Small ribosomal subunit protein eS26 Chain: Aa
Molecule details ›
Chain: Aa
Length: 117 amino acids
Theoretical weight: 13.28 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O45499 (Residues: 1-117; Coverage: 100%)
Gene names: F39B2.6, rps-26
Sequence domains: Ribosomal protein S26e
Ubiquitin-like protein 1-ribosomal protein eS31 fusion protein Chain: Af
Molecule details ›
Chain: Af
Length: 163 amino acids
Theoretical weight: 18.14 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P37165 (Residues: 1-163; Coverage: 100%)
Gene names: H06I04.4, ubl-1
Sequence domains:
Small ribosomal subunit protein uS2 Chain: AA
Molecule details ›
Chain: AA
Length: 276 amino acids
Theoretical weight: 30.74 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P46769 (Residues: 1-276; Coverage: 100%)
Gene names: B0393.1, rps-0
Sequence domains: Ribosomal protein S2
Small ribosomal subunit protein uS11 Chain: AO
Molecule details ›
Chain: AO
Length: 152 amino acids
Theoretical weight: 16.28 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P48150 (Residues: 1-152; Coverage: 100%)
Gene names: F37C12.9, rps-14
Sequence domains: Ribosomal protein S11
Small ribosomal subunit protein eS8 Chain: AI
Molecule details ›
Chain: AI
Length: 208 amino acids
Theoretical weight: 23.8 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P48156 (Residues: 1-208; Coverage: 100%)
Gene names: F42C5.8, rps-8
Sequence domains: Ribosomal protein S8e
Small ribosomal subunit protein uS7 Chain: AF
Molecule details ›
Chain: AF
Length: 210 amino acids
Theoretical weight: 23.19 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P49041 (Residues: 1-210; Coverage: 100%)
Gene names: T05E11.1, rps-5
Sequence domains: Ribosomal protein S7p/S5e
Small ribosomal subunit protein eS12 Chain: AM
Molecule details ›
Chain: AM
Length: 140 amino acids
Theoretical weight: 15.09 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P49196 (Residues: 1-140; Coverage: 100%)
Gene names: F54E7.2, rps-12
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Small ribosomal subunit protein eS21 Chain: AV
Molecule details ›
Chain: AV
Length: 88 amino acids
Theoretical weight: 9.69 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P49197 (Residues: 1-88; Coverage: 100%)
Gene names: F37C12.11, rps-21
Sequence domains: Ribosomal protein S21e
Small ribosomal subunit protein uS15 Chain: AN
Molecule details ›
Chain: AN
Length: 151 amino acids
Theoretical weight: 17.35 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P51404 (Residues: 1-151; Coverage: 100%)
Gene names: C16A3.9, rps-13
Sequence domains:
Small ribosomal subunit protein eS25 Chain: AZ
Molecule details ›
Chain: AZ
Length: 117 amino acids
Theoretical weight: 12.94 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P52821 (Residues: 1-117; Coverage: 100%)
Gene names: K02B2.5, rps-25
Sequence domains: S25 ribosomal protein
Small ribosomal subunit protein uS14 Chain: Ad
Molecule details ›
Chain: Ad
Length: 56 amino acids
Theoretical weight: 6.57 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P90983 (Residues: 1-56; Coverage: 100%)
Gene names: B0412.4, CELE_B0412.4, rps-29
Sequence domains: Ribosomal protein S14p/S29e
Small ribosomal subunit protein eS24 Chain: AY
Molecule details ›
Chain: AY
Length: 131 amino acids
Theoretical weight: 14.91 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q1XFY9 (Residues: 1-131; Coverage: 100%)
Gene names: CELE_T07A9.11, T07A9.11, rps-24
Sequence domains: Ribosomal protein S24e
Small ribosomal subunit protein uS10 Chain: AU
Molecule details ›
Chain: AU
Length: 117 amino acids
Theoretical weight: 13.26 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q8WQA8 (Residues: 1-117; Coverage: 100%)
Gene names: CELE_Y105E8A.16, Y105E8A.16, rps-20
Sequence domains: Ribosomal protein S10p/S20e
Small ribosomal subunit protein eS6 Chain: AG
Molecule details ›
Chain: AG
Length: 246 amino acids
Theoretical weight: 28.2 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q9NEN6 (Residues: 1-246; Coverage: 100%)
Gene names: Y71A12B.1, rps-6
Sequence domains: Ribosomal protein S6e
Small ribosomal subunit protein eS27 Chain: Ab
Molecule details ›
Chain: Ab
Length: 83 amino acids
Theoretical weight: 9.36 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q9TXP0 (Residues: 1-83; Coverage: 100%)
Gene names: F56E10.4, rps-27
Sequence domains: Ribosomal protein S27
Small ribosomal subunit protein uS19 Chain: AP
Molecule details ›
Chain: AP
Length: 151 amino acids
Theoretical weight: 17.28 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q9XVP0 (Residues: 1-151; Coverage: 100%)
Gene names: F36A2.6, rps-15
Sequence domains: Ribosomal protein S19
Small ribosomal subunit protein eS28 Chain: Ac
Molecule details ›
Chain: Ac
Length: 65 amino acids
Theoretical weight: 7.45 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q95Y04 (Residues: 1-65; Coverage: 100%)
Gene names: Y41D4B.5, rps-28
Sequence domains: Ribosomal protein S28e
Ubiquitin-like domain-containing protein Chain: Ae
Molecule details ›
Chain: Ae
Length: 130 amino acids
Theoretical weight: 14.06 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q18231 (Residues: 1-130; Coverage: 100%)
Gene names: C26F1.4, CELE_C26F1.4, fau-1, rps-30
Sequence domains:
Small ribosomal subunit protein uS12 Chain: AX
Molecule details ›
Chain: AX
Length: 143 amino acids
Theoretical weight: 15.91 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q19877 (Residues: 1-143; Coverage: 100%)
Gene names: F28D1.7, rps-23
Sequence domains: Ribosomal protein S12/S23
Small ribosomal subunit protein uS17 Chain: AL
Molecule details ›
Chain: AL
Length: 155 amino acids
Theoretical weight: 17.78 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q20206 (Residues: 1-155; Coverage: 100%)
Gene names: CELE_F40F11.1, F40F11.1, rps-11
Sequence domains:
Small ribosomal subunit protein uS4 Chain: AJ
Molecule details ›
Chain: AJ
Length: 189 amino acids
Theoretical weight: 22.01 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q20228 (Residues: 1-189; Coverage: 100%)
Gene names: F40F8.10, rps-9
Sequence domains:
Small ribosomal subunit protein uS9 Chain: AQ
Molecule details ›
Chain: AQ
Length: 144 amino acids
Theoretical weight: 16.35 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q22054 (Residues: 1-144; Coverage: 100%)
Gene names: T01C3.6, rps-16
Sequence domains: Ribosomal protein S9/S16
Small ribosomal subunit protein eS7 Chain: AH
Molecule details ›
Chain: AH
Length: 194 amino acids
Theoretical weight: 22.1 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q23312 (Residues: 1-194; Coverage: 100%)
Gene names: ZC434.2, rps-7
Sequence domains: Ribosomal protein S7e
Large ribosomal subunit protein uL30 Chain: CF
Molecule details ›
Chain: CF
Length: 244 amino acids
Theoretical weight: 28.19 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O01802 (Residues: 1-244; Coverage: 100%)
Gene names: F53G12.10, rpl-7
Sequence domains:
Large ribosomal subunit protein eL20 Chain: CS
Molecule details ›
Chain: CS
Length: 180 amino acids
Theoretical weight: 21 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O44480 (Residues: 1-180; Coverage: 100%)
Gene names: E04A4.8, rpl-20
Sequence domains: Ribosomal proteins 50S-L18Ae/60S-L20/60S-L18A
Large ribosomal subunit protein uL14 Chain: CV
Molecule details ›
Chain: CV
Length: 140 amino acids
Theoretical weight: 14.98 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P48158 (Residues: 1-140; Coverage: 100%)
Gene names: B0336.10, rpl-23
Sequence domains: Ribosomal protein L14p/L23e
Large ribosomal subunit protein uL3 Chain: CB
Molecule details ›
Chain: CB
Length: 401 amino acids
Theoretical weight: 45.76 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P50880 (Residues: 1-401; Coverage: 100%)
Gene names: F13B10.2, rpl-3
Sequence domains: Ribosomal protein L3
Large ribosomal subunit protein eL22 Chain: CU
Molecule details ›
Chain: CU
Length: 130 amino acids
Theoretical weight: 14.98 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P52819 (Residues: 1-130; Coverage: 100%)
Gene names: C27A2.2, rpl-22
Sequence domains: Ribosomal L22e protein family
Large ribosomal subunit protein eL13 Chain: CL
Molecule details ›
Chain: CL
Length: 207 amino acids
Theoretical weight: 23.81 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P91128 (Residues: 1-207; Coverage: 100%)
Gene names: C32E8.2, rpl-13
Sequence domains: Ribosomal protein L13e
Large ribosomal subunit protein uL2 Chain: CA
Molecule details ›
Chain: CA
Length: 260 amino acids
Theoretical weight: 28.27 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q9XVF7 (Residues: 1-260; Coverage: 100%)
Gene names: B0250.1, rpl-2, rpl-8
Sequence domains:
Large ribosomal subunit protein eL8 Chain: CG
Molecule details ›
Chain: CG
Length: 265 amino acids
Theoretical weight: 30.24 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q966C6 (Residues: 1-265; Coverage: 100%)
Gene names: Y24D9A.4, rpl-7A
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Large ribosomal subunit protein uL16 Chain: CI
Molecule details ›
Chain: CI
Length: 214 amino acids
Theoretical weight: 24.8 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q09533 (Residues: 1-214; Coverage: 100%)
Gene names: F10B5.1, rpl-10
Sequence domains: Ribosomal protein L16p/L10e
Large ribosomal subunit protein uL13 Chain: CO
Molecule details ›
Chain: CO
Length: 202 amino acids
Theoretical weight: 23.04 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q27389 (Residues: 1-202; Coverage: 100%)
Gene names: M01F1.2, rpl-16
Sequence domains: Ribosomal protein L13
Large ribosomal subunit protein uL4 Chain: CC
Molecule details ›
Chain: CC
Length: 345 amino acids
Theoretical weight: 38.74 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O02056 (Residues: 1-345; Coverage: 100%)
Gene names: B0041.4, rpl-4
Sequence domains:
Large ribosomal subunit protein uL29 Chain: Ch
Molecule details ›
Chain: Ch
Length: 123 amino acids
Theoretical weight: 14.23 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P34662 (Residues: 1-123; Coverage: 100%)
Gene names: ZK652.4, rpl-35
Sequence domains: Ribosomal L29 protein
Large ribosomal subunit protein eL6 Chain: CE
Molecule details ›
Chain: CE
Length: 217 amino acids
Theoretical weight: 24.36 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P47991 (Residues: 1-217; Coverage: 100%)
Gene names: R151.3, rpl-6
Sequence domains: Ribosomal protein L6e
Large ribosomal subunit protein eL42 Chain: Co
Molecule details ›
Chain: Co
Length: 105 amino acids
Theoretical weight: 12.4 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P48166 (Residues: 1-105; Coverage: 100%)
Gene names: C09H10.2, rpl-36.A, rpl-41
Sequence domains: Ribosomal protein L44
Large ribosomal subunit protein eL33 Chain: Cf
Molecule details ›
Chain: Cf
Length: 124 amino acids
Theoretical weight: 13.8 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P49180 (Residues: 1-124; Coverage: 100%)
Gene names: F10E7.7, rpl-33
Sequence domains: Ribosomal protein L35Ae
Large ribosomal subunit protein eL36 Chain: Ci
Molecule details ›
Chain: Ci
Length: 104 amino acids
Theoretical weight: 11.92 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P49181 (Residues: 1-104; Coverage: 100%)
Gene names: F37C12.4, rpl-36
Sequence domains: Ribosomal protein L36e
Large ribosomal subunit protein eL39 Chain: Cl
Molecule details ›
Chain: Cl
Length: 51 amino acids
Theoretical weight: 6.35 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P52814 (Residues: 1-51; Coverage: 100%)
Gene names: C26F1.9, rpl-39
Sequence domains: Ribosomal L39 protein
Large ribosomal subunit protein eL15 Chain: CN
Molecule details ›
Chain: CN
Length: 204 amino acids
Theoretical weight: 24.19 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P91374 (Residues: 1-204; Coverage: 100%)
Gene names: K11H12.2, rpl-15
Sequence domains: Ribosomal L15
Large ribosomal subunit protein uL15 Chain: Ca
Molecule details ›
Chain: Ca
Length: 145 amino acids
Theoretical weight: 16.25 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q9BKU5 (Residues: 1-145; Coverage: 100%)
Gene names: CELE_Y37E3.8, Y37E3.8, rpl-27a
Sequence domains: Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Large ribosomal subunit protein eL43 Chain: Cp
Molecule details ›
Chain: Cp
Length: 91 amino acids
Theoretical weight: 10.13 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q9U2A8 (Residues: 1-91; Coverage: 100%)
Gene names: Y48B6A.2, rpl-37a, rpl-43
Sequence domains: Ribosomal L37ae protein family
Large ribosomal subunit protein eL14 Chain: CM
Molecule details ›
Chain: CM
Length: 135 amino acids
Theoretical weight: 15.38 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q9XVE9 (Residues: 1-135; Coverage: 100%)
Gene names: C04F12.4, CELE_C04F12.4, rpl-14
Sequence domains: Ribosomal protein L14
Large ribosomal subunit protein eL30 Chain: Cc
Molecule details ›
Chain: Cc
Length: 115 amino acids
Theoretical weight: 12.45 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q9XWS4 (Residues: 1-115; Coverage: 100%)
Gene names: CELE_Y106G6H.3, Y106G6H.3, rpl-30
Sequence domains: Ribosomal protein L7Ae/L30e/S12e/Gadd45 family
Large ribosomal subunit protein uL6 Chain: CH
Molecule details ›
Chain: CH
Length: 189 amino acids
Theoretical weight: 21.55 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q95Y90 (Residues: 1-189; Coverage: 100%)
Gene names: R13A5.8, rpl-9
Sequence domains: Ribosomal protein L6
Large ribosomal subunit protein uL24 Chain: CY
Molecule details ›
Chain: CY
Length: 142 amino acids
Theoretical weight: 16.12 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q19869 (Residues: 1-142; Coverage: 100%)
Gene names: F28C6.7, rpl-26
Sequence domains:
Large ribosomal subunit protein eL19 Chain: CR
Molecule details ›
Chain: CR
Length: 198 amino acids
Theoretical weight: 23.72 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O02639 (Residues: 1-198; Coverage: 100%)
Gene names: C09D4.5, rpl-19
Sequence domains: Ribosomal protein L19e
60S ribosomal protein L29 Chain: Cb
Molecule details ›
Chain: Cb
Length: 62 amino acids
Theoretical weight: 7.25 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O45226 (Residues: 1-62; Coverage: 100%)
Gene names: B0513.3, CELE_B0513.3, rpl-29
Sequence domains: Ribosomal L29e protein family
Large ribosomal subunit protein eL18 Chain: CQ
Molecule details ›
Chain: CQ
Length: 188 amino acids
Theoretical weight: 21.04 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O45946 (Residues: 1-188; Coverage: 100%)
Gene names: Y45F10D.12, rpl-18
Sequence domains: Ribosomal protein 60S L18 and 50S L18e
Large ribosomal subunit protein eL21 Chain: CT
Molecule details ›
Chain: CT
Length: 161 amino acids
Theoretical weight: 18.35 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P34334 (Residues: 1-161; Coverage: 100%)
Gene names: C14B9.7, rpl-21
Sequence domains: Ribosomal protein L21e
Large ribosomal subunit protein uL18 Chain: CD
Molecule details ›
Chain: CD
Length: 293 amino acids
Theoretical weight: 33.45 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P49405 (Residues: 1-293; Coverage: 100%)
Gene names: F54C9.5, rpl-5
Sequence domains:
Large ribosomal subunit protein eL27 Chain: CZ
Molecule details ›
Chain: CZ
Length: 136 amino acids
Theoretical weight: 15.77 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P91914 (Residues: 1-136; Coverage: 100%)
Gene names: C53H9.1, rpl-27
Sequence domains:
Large ribosomal subunit protein uL22 Chain: CP
Molecule details ›
Chain: CP
Length: 187 amino acids
Theoretical weight: 21.56 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q9BL19 (Residues: 1-187; Coverage: 100%)
Gene names: Y48G8AL.8, rpl-17
Sequence domains: Ribosomal protein L22p/L17e
eL41 Chain: Cn
Molecule details ›
Chain: Cn
Length: 22 amino acids
Theoretical weight: 3.01 KDa
Source organism: Caenorhabditis elegans
Large ribosomal subunit protein eL34 Chain: Cg
Molecule details ›
Chain: Cg
Length: 110 amino acids
Theoretical weight: 12.71 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: A3QMC5 (Residues: 1-110; Coverage: 100%)
Gene names: C42C1.14, CELE_C42C1.14, rpl-34
Sequence domains: Ribosomal protein L34e
Large ribosomal subunit protein eL38 Chain: Ck
Molecule details ›
Chain: Ck
Length: 70 amino acids
Theoretical weight: 8.1 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O17570 (Residues: 1-70; Coverage: 100%)
Gene names: C06B8.8, rpl-38
Sequence domains: Ribosomal L38e protein family
Ubiquitin-ribosomal protein eL40 fusion protein Chain: Cm
Molecule details ›
Chain: Cm
Length: 128 amino acids
Theoretical weight: 14.68 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: P49632 (Residues: 1-128; Coverage: 100%)
Gene names: ZK1010.1, ubib, ubq-2
Sequence domains:
Large ribosomal subunit protein eL31 Chain: Cd
Molecule details ›
Chain: Cd
Length: 122 amino acids
Theoretical weight: 14.29 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q9U332 (Residues: 1-122; Coverage: 100%)
Gene names: W09C5.6, rpl-31
Sequence domains: Ribosomal protein L31e
Large ribosomal subunit protein eL32 Chain: Ce
Molecule details ›
Chain: Ce
Length: 134 amino acids
Theoretical weight: 15.55 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q22716 (Residues: 1-134; Coverage: 100%)
Gene names: CELE_T24B8.1, T24B8.1, rpl-32
Sequence domains: Ribosomal protein L32
Large ribosomal subunit protein eL24 Chain: CW
Molecule details ›
Chain: CW
Length: 159 amino acids
Theoretical weight: 17.83 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O01868 (Residues: 1-159; Coverage: 100%)
Gene names: D1007.12, rpl-24.1
Sequence domains: Ribosomal protein L24e
Ribosomal protein L37 Chain: Cj
Molecule details ›
Chain: Cj
Length: 92 amino acids
Theoretical weight: 10.54 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: O62388 (Residues: 1-92; Coverage: 100%)
Gene names: CELE_W01D2.1, W01D2.1, rpl-37.1
Sequence domains: Ribosomal protein L37e
Large ribosomal subunit protein uL5B Chain: CJ
Molecule details ›
Chain: CJ
Length: 196 amino acids
Theoretical weight: 22.82 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q19162 (Residues: 1-196; Coverage: 100%)
Gene names: F07D10.1, rpl-11.2
Sequence domains:
Large ribosomal subunit protein uL23B Chain: CX
Molecule details ›
Chain: CX
Length: 146 amino acids
Theoretical weight: 16.32 KDa
Source organism: Caenorhabditis elegans
UniProt:
  • Canonical: Q20647 (Residues: 1-146; Coverage: 100%)
Gene names: F52B5.6, rpl-25.2
Sequence domains:
5S ribosomal RNA Chain: A7
Molecule details ›
Chain: A7
Length: 119 nucleotides
Theoretical weight: 38.25 KDa
5.8S ribosomal RNA Chain: A8
Molecule details ›
Chain: A8
Length: 153 nucleotides
Theoretical weight: 49.25 KDa
18S Ribosomal RNA Chain: B2
Molecule details ›
Chain: B2
Length: 1754 nucleotides
Theoretical weight: 565.16 KDa
28S ribosomal RNA Chain: A5
Molecule details ›
Chain: A5
Length: 3510 nucleotides
Theoretical weight: 1132.08 KDa
tRNA Chains: DA, DB
Molecule details ›
Chains: DA, DB
Length: 76 nucleotides
Theoretical weight: 24.53 KDa
Messenger RNA Chain: DC
Molecule details ›
Chain: DC
Length: 10 nucleotides
Theoretical weight: 3.02 KDa

Ligands and Environments

2 bound ligands:
Ligand SPD 1 x SPD
Ligand 3HE 1 x 3HE
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 2.63Å
Relevant EMDB volumes: EMD-44533

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