9brz

Electron Microscopy
3.8Å resolution

V0-only V-ATPase and synaptophysin complex in mouse brain isolated synaptic vesicles

Released:

Function and Biology Details

Biological process:
Cellular component:

Structure analysis Details

Assembly composition:
hetero heptadecamer (preferred)
PDBe Complex ID:
PDB-CPX-273851 (preferred)
Entry contents:
9 distinct polypeptide molecules
Macromolecules (11 distinct):
V-type proton ATPase subunit S1 Chain: c
Molecule details ›
Chain: c
Length: 463 amino acids
Theoretical weight: 51.05 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q9R1Q9 (Residues: 1-463; Coverage: 100%)
Gene names: Atp6ap1, Atp6ip1, Atp6s1
Sequence domains:
V-type proton ATPase 21 kDa proteolipid subunit c'' Chain: b
Molecule details ›
Chain: b
Length: 205 amino acids
Theoretical weight: 21.62 KDa
Source organism: Mus musculus
UniProt:
  • Canonical: Q91V37 (Residues: 1-205; Coverage: 100%)
Gene names: Atp6f, Atp6v0b
Sequence domains: ATP synthase subunit C
V-type proton ATPase subunit d 1 Chain: d
Ribonuclease kappa Chain: f
V-type proton ATPase 16 kDa proteolipid subunit c Chains: g, h, i, j, k, l, m, n, o
Renin receptor Chain: p
Synaptophysin Chain: s
V-type proton ATPase subunit e 2 Chain: e
V-type proton ATPase 116 kDa subunit a 1 Chain: a

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer : NEW Components: NAG
1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.8Å
Relevant EMDB volumes: EMD-44846