› 9dsz

X-ray diffraction
1.9Å resolution

Crystal structure of ADP-ribose diphosphatase from Klebsiella pneumoniae (DTP bound)

Released:
DOI: 10.2210/pdb9dsz/pdb
PDB entry 9dsz coloured by chain, front view.
PDB entry 9dsz coloured by chain, side view.
PDB entry 9dsz coloured by chain, top view.
Source organism: Klebsiella pneumoniae
Entry authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)

Function and Biology Details

Reaction catalysed: 
ADP-D-ribose + H(2)O = AMP + D-ribose 5-phosphate
Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
homo dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-242073 (preferred)
Entry contents:
1 distinct polypeptide molecule
Macromolecule:
ADP-ribose pyrophosphatase Chains: A, B, C, D, E, F, G, H
Molecule details ›
Chains: A, B, C, D, E, F, G, H
Length: 218 amino acids
Theoretical weight: 24.74 KDa
Source organism: Klebsiella pneumoniae
Expression system: Escherichia coli BL21(DE3)
UniProt:
  • Canonical: A0A0H3GVQ7 (Residues: 1-210; Coverage: 100%)
Gene name: KPHS_45750
Sequence domains: NUDIX domain

Ligands and Environments

2 bound ligands:
Ligand DTP 8 x DTP
Ligand MG 10 x MG
No modified residues

Experiments and Validation Details

Entry percentile scores
X-ray source: NSLS-II BEAMLINE 19-ID
Spacegroup: P21
Unit cell:
a: 92.843Å b: 79.311Å c: 115.827Å
α: 90° β: 90.3° γ: 90°
R-values:
R R work R free
0.198 0.196 0.233
Expression system: Escherichia coli BL21(DE3)

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