9e76

Electron Microscopy
3.4Å resolution

Yeast V-ATPase Vo proton channel bound to nanobody 1WVA25

Released:

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero nonadecamer (preferred)
PDBe Complex ID:
PDB-CPX-284915 (preferred)
Entry contents:
9 distinct polypeptide molecules
Macromolecules (9 distinct):
V-type proton ATPase subunit d Chain: B
Molecule details ›
Chain: B
Length: 345 amino acids
Theoretical weight: 39.82 KDa
Source organism: Saccharomyces cerevisiae
V-type proton ATPase subunit c'' Chain: C
Molecule details ›
Chain: C
Length: 213 amino acids
Theoretical weight: 22.61 KDa
Source organism: Saccharomyces cerevisiae
V-type proton ATPase subunit c' Chain: D
V-type proton ATPase subunit c Chains: E, F, G, H, I, J, K, L
V-type proton ATPase subunit e Chain: M
V0 assembly protein 1 Chain: N
V-type proton ATPase subunit f Chain: O
Nanobody 1WVA25 Chains: Q, R, S, T
V-type proton ATPase subunit a, vacuolar isoform Chain: A

Ligands and Environments

No bound ligands
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.4Å
Relevant EMDB volumes: EMD-47659
Expression system: Escherichia coli