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Electron Microscopy
4Å resolution

SARS-CoV-2 (wuhan variant) Spike protein in complex with the single chain fragment scFv41N (focused refinement)

Released:
DOI: 10.2210/pdb9fgs/pdb
PDB entry 9fgs coloured by chain, front view.
PDB entry 9fgs coloured by chain, side view.
PDB entry 9fgs coloured by chain, top view.
Source organisms:
Entry authors: Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M
Related structures: EMD-50420

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-245763 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Fibritin; Spike glycoprotein Chain: C
Molecule details ›
Chain: C
Length: 1288 amino acids
Theoretical weight: 142.43 KDa
Source organisms: Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 1-1208; Coverage: 95%)
  • Canonical: P10104 (Residues: 458-484; Coverage: 6%)
Gene names: 2, S, wac
Sequence domains:
Single Chain fragment scFv41N Chain: E
Molecule details ›
Chain: E
Length: 264 amino acids
Theoretical weight: 27.79 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli

Ligands and Environments

1 bound ligand:
Ligand NAG 1 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 4Å
Relevant EMDB volumes: EMD-50420
Expression systems:
  • Homo sapiens
  • Escherichia coli

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