› 9fgt

Electron Microscopy
3.8Å resolution

SARS-CoV-2 (B.1.1.529/Omicron variant) Spike protein in complex with the single chain fragment scFv76 (focused refinement)

Released:
DOI: 10.2210/pdb9fgt/pdb
PDB entry 9fgt coloured by chain, front view.
PDB entry 9fgt coloured by chain, side view.
PDB entry 9fgt coloured by chain, top view.
Source organisms:
Entry authors: Berlinguer M, Chaves-Sanjuan A, Milazzo FM, Minenkova O, De Santis R, Bolognesi M
Related structures: EMD-50424

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero dimer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-272785 (preferred)
Entry contents:
2 distinct polypeptide molecules
Macromolecules (2 distinct):
Fibritin; Spike glycoprotein Chain: C
Molecule details ›
Chain: C
Length: 1214 amino acids
Theoretical weight: 135.26 KDa
Source organism: Escherichia virus T4
Expression system: Homo sapiens
Single chain fragment scFv76 Chain: E
Molecule details ›
Chain: E
Length: 264 amino acids
Theoretical weight: 28.04 KDa
Source organism: Homo sapiens
Expression system: Escherichia coli

Ligands and Environments

1 bound ligand:
Ligand NAG 1 x NAG
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.8Å
Relevant EMDB volumes: EMD-50424
Expression systems:
  • Homo sapiens
  • Escherichia coli

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