9khz

Electron Microscopy
3.03Å resolution

Structure of DdmD dimer with ssDNA with ADP bound

Released:
Related structures: EMD-62360

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero tetramer (preferred)
PDBe Complex ID:
PDB-CPX-285818 (preferred)
Entry contents:
1 distinct polypeptide molecule
2 distinct DNA molecules
Macromolecules (3 distinct):
Helicase/UvrB N-terminal domain-containing protein Chains: A, B
Molecule details ›
Chains: A, B
Length: 1195 amino acids
Theoretical weight: 136.56 KDa
Source organism: Vibrio cholerae
Expression system: Escherichia coli BL21
UniProt:
  • Canonical: B9TSM3 (Residues: 31-1220; Coverage: 98%)
Gene name: VPI2_0019c
DNA (5'-D(P*CP*CP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3') Chain: C
Molecule details ›
Chain: C
Length: 11 nucleotides
Theoretical weight: 3.27 KDa
Source organism: synthetic construct
Expression system: Not provided
DNA (5'-D(P*CP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3') Chain: D

Ligands and Environments

1 bound ligand:
No modified residues

Experiments and Validation Details

Entry percentile scores
Resolution: 3.03Å
Relevant EMDB volumes: EMD-62360
Expression systems:
  • Escherichia coli BL21
  • Not provided