› 9l6c

Electron Microscopy
3.33Å resolution

Cryo-EM structure of Delta RBD complexed with ConD-852, P2C-1F11 and S304 Fabs

Released:
DOI: 10.2210/pdb9l6c/pdb
PDB entry 9l6c coloured by chain, front view.
PDB entry 9l6c coloured by chain, side view.
PDB entry 9l6c coloured by chain, top view.
Source organisms:
Entry authors: Zheng Z, Bing J, Congcong L, Bing Z
Related structures: EMD-62852

Function and Biology Details

Biochemical function:
  • not assigned
Biological process:
  • not assigned
Cellular component:
  • not assigned

Structure analysis Details

Assembly composition:
hetero heptamer (preferred)
Assembly name:
PDBe Complex ID:
PDB-CPX-290598 (preferred)
Entry contents:
7 distinct polypeptide molecules
Macromolecules (8 distinct):
Heavy chain of Fab ConD-852 Chain: A
Molecule details ›
Chain: A
Length: 123 amino acids
Theoretical weight: 13.73 KDa
Source organism: Homo sapiens
Expression system: Homo sapiens
Spike protein S1 Chain: E
Molecule details ›
Chain: E
Length: 194 amino acids
Theoretical weight: 21.85 KDa
Source organism: Severe acute respiratory syndrome coronavirus 2
Expression system: Homo sapiens
UniProt:
  • Canonical: P0DTC2 (Residues: 333-526; Coverage: 15%)
Gene names: 2, S
Sequence domains: Betacoronavirus spike glycoprotein S1, receptor binding
Light chain of Fab ConD-852 Chain: B
Heavy chain of Fab S304 Chain: H
Light chain of Fab S304 Chain: L
Heavy chain of Fab P2C-1F11 Chain: D
Light chain of Fac P2C-1F11 Chain: F

Ligands and Environments

Carbohydrate polymer : NEW Components: NAG
Carbohydrate polymer
No bound ligands
No modified residues

Experiments and Validation Details

wwPDB Validation report is not available for this EM entry.
Resolution: 3.33Å
Relevant EMDB volumes: EMD-62852
Expression system: Homo sapiens

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