All structure family : Delta-endotoxin CytB-like
 
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Entry Information
Entry status  (1)
REL
(7)
 
Experimental methods  (1)
X-ray diffraction
(7)
 
Authors  (19)
Liaw Y-C
(4)
Liaw YC
(4)
Lin J-Y
(4)
Lin JY
(4)
Lin S-C
(4)
Lin SC
(4)
Lo Y-C
(4)
Lo YC
(4)
Albeck S
(2)
Ben-Dov E
(2)
Cahan R
(2)
Cohen S
(2)
Dym O
(2)
Firer M
(2)
Israel Structural Proteomics Center (ISPC)
(2)
Zaritsky A
(2)
Ellar DJ
(1)
Koni PA
(1)
Li J
(1)
 
Homo / hetero assembly  (1)
homo
(7)
 
Assembly composition  (1)
protein structure
(7)
 
Assembly polymer count  (2)
monomer
(6)
dimer
(1)
 
Resolution distribution
1.0 - 1.5
(1)
1.5 - 2
(1)
2.0 - 2.5
(1)
2.5 - 3
(3)
3.0 - 3.5
(1)
 
Release year distribution
1995 - 2000
(1)
2000 - 2005
(4)
2005 - 2010
(1)
2010 - 2015
(1)
 
Journal  (1)
J Mol Biol
(7)
 
Macromolecules
Organism superkingdom  (2)
Eukaryota
(4)
Bacteria
(3)
 
Organism name  (3)
Volvariella volvacea
(4)
Bacillus thuringiensis serovar israelensis
(2)
Bacillus thuringiensis serovar kyushuensis
(1)
 
Molecule name  (7)
Delta-endotoxin CytB
(4)
Volvatoxin A2
(4)
29 kDa cytolytic toxin
(2)
27 kDa cytolytic toxin
(1)
Type-1Aa cytolytic delta-endotoxin
(1)
Type-2Aa cytolytic delta-endotoxin
(1)
Type-2Ba cytolytic delta-endotoxin
(1)
 
Molecule type  (1)
Protein
(7)
 
Gene names  (6)
cytB
(2)
cyt1Aa
(1)
cyt2Aa1
(1)
cyt2Ba1
(1)
cyt2Ba7
(1)
cytA
(1)
 
Interacting ligands  (3)
ACT : ACETATE ION
(1)
ACY : ACETIC ACID
(1)
MLI : MALONATE ION
(1)
 
Function and Biology
Biological function  (1)
toxin activity
(2)
 
Biological process  (2)
sporulation resulting in formation of a cellular spore
(6)
modulation of process of another organism
(2)
 
Biological cell component  (1)
extracellular region
(7)
 
Sequence and Structure classification
SCOP fold  (1)
CytB endotoxin-like
(5)
 
SCOP family  (1)
CytB endotoxin-like
(5)
 
CATH class  (1)
Alpha Beta
(7)
 
CATH topology  (1)
Delta-endotoxin CytB
(7)
 
Pfam accession / name  (1)
PF01338 : Bac_thur_toxin
(7)
 
Experimental Information
Diffraction protocol  (2)
Single wavelength
(5)
MAD
(1)
 
Diffraction radiation source type  (2)
Synchrotron
(5)
Rotating anode
(2)
 
Diffraction source  (5)
RIGAKU RU300
(2)
SPRING-8 BEAMLINE BL38B1
(2)
ESRF BEAMLINE ID14-4
(1)
SPRING-8 BEAMLINE BL12B2
(1)
SRS BEAMLINE PX9.6
(1)
 
Synchrotron site  (3)
SPring-8
(3)
ESRF
(1)
SRS
(1)
 
Diffraction detector type  (2)
CCD
(4)
Image plate
(3)
 
Refinement software  (3)
CNS
(4)
REFMAC
(2)
X-PLOR
(1)
 
Representative Structures
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Entries 1 to 7 of 7
Entries 1 to 7 of 7
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High-resolution crystal structure of activated Cyt2Ba monomer from Bacillus thuringiensis subsp. israelensis
Dym O, Israel Structural Proteomics Center (ISPC)
J Mol Biol (2008) [PMID: 18571667  ]
Assembly composition: protein only structure
Assembly name: Type-2Ba cytolytic delta-endotoxin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-175073 (Preferred)   search this ID
PDBe-KB: Q45723   
X-ray diffraction
1.8Å resolution
Released: 15 Jul 2008
Model geometry
Fit model/data
2rci
2rci
2rci
Crystal Structure and Hemolytic Activity of the Cyt1Aa Toxin from Bacillus thuringiensis subsp. israelensis
Cohen S, Albeck S, Ben-Dov E, Cahan R, Firer M, Zaritsky A, Dym O, Israel Structural Proteomics Center (ISPC)
J Mol Biol (2011) [PMID: 21959261  ]
Assembly composition: protein only structure
Assembly name: Type-1Aa cytolytic delta-endotoxin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-141167 (Preferred)   search this ID
PDBe-KB: P0A382   
X-ray diffraction
2.19Å resolution
Released: 12 Oct 2011
Model geometry
Fit model/data
3ron
3ron
3ron
DELTA-ENDOTOXIN
Li J
J Mol Biol (1996) [PMID: 8632451  ]
Assembly composition: protein only structure
Assembly name: Type-2Aa cytolytic delta-endotoxin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-170032 (Preferred)   search this ID
PDBe-KB: Q04470   
X-ray diffraction
2.6Å resolution
Released: 14 Oct 1996
Model geometry
Fit model/data
1cby
1cby
1cby
volvatoxin A2 in monoclinic crystal
Lin S-C, Lo Y-C, Lin J-Y, Liaw Y-C
J Mol Biol (2004) [PMID: 15451675  ]
Source organism: Volvariella volvacea  
Assembly composition: protein only structure
Bound ligands: ACY    ACY   
Assembly name: Delta-endotoxin CytB (Preferred)   search this complex
PDBe complex ID: PDB-CPX-180413 (Preferred)   search this ID
PDBe-KB: Q6USC4   
X-ray diffraction
1.42Å resolution
Released: 24 Aug 2004
Model geometry
Fit model/data
1pp0
1pp0
1pp0
VVA2 (STRIP CRYSTAL FORM)
Lin S-C, Lo Y-C, Lin J-Y, Liaw Y-C
J Mol Biol (2004) [PMID: 15451675  ]
Source organism: Volvariella volvacea  
Assembly composition: protein only structure
Assembly name: Delta-endotoxin CytB (Preferred)   search this complex
PDBe complex ID: PDB-CPX-180413 (Preferred)   search this ID
PDBe-KB: Q6USC4   
X-ray diffraction
3.2Å resolution
Released: 24 Aug 2004
Model geometry
Fit model/data
1pp6
1pp6
1pp6
VVA2 isoform
Lin S-C, Lo Y-C, Lin J-Y, Liaw Y-C
J Mol Biol (2004) [PMID: 15451675  ]
Source organism: Volvariella volvacea  
Assembly composition: protein only structure
Bound ligands: MLI   
Assembly name: Delta-endotoxin CytB (Preferred)   search this complex
PDBe complex ID: PDB-CPX-180413 (Preferred)   search this ID
PDBe-KB: Q6USC4   
X-ray diffraction
2.6Å resolution
Released: 5 Oct 2004
Model geometry
Fit model/data
1vcy
1vcy
1vcy
volvatoxin A2 (diamond crystal form)
Lin S-C, Lo Y-C, Lin J-Y, Liaw Y-C
J Mol Biol (2004) [PMID: 15451675  ]
Source organism: Volvariella volvacea  
Assembly composition: protein only structure
Bound ligands: ACT    ACT   
Assembly name: Delta-endotoxin CytB (Preferred)   search this complex
PDBe complex ID: PDB-CPX-180413 (Preferred)   search this ID
PDBe-KB: Q6USC4   
X-ray diffraction
2.6Å resolution
Released: 5 Oct 2004
Model geometry
Fit model/data
1vgf
1vgf
1vgf
Entries 1 to 7 of 7
Entries 1 to 7 of 7