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Entries released this week
(1)
Entry Information
Entry status
(1)
REL
(303)
Experimental methods
(3)
X-ray diffraction
(270)
Electron Microscopy
(25)
Solution NMR
(8)
Authors
(901)
Kurumizaka H
(52)
Davey CA
(39)
Luger K
(36)
Tachiwana H
(30)
Horikoshi N
(29)
Kagawa W
(26)
Osakabe A
(26)
Kimura H
(20)
Arimura Y
(19)
Iwasaki W
(17)
Davey GE
(16)
White CL
(16)
Edayathumangalam RS
(15)
Ohkawa Y
(15)
Shibata T
(15)
Adhireksan Z
(14)
Dyson PJ
(14)
Taguchi H
(14)
Wu B
(14)
Huang H
(13)
Kawaguchi K
(13)
Bao Y
(12)
Dyer PN
(12)
Maehara K
(12)
Patel DJ
(12)
Bai Y
(11)
Forsberg LJ
(11)
Muthurajan UM
(11)
Padavattan S
(11)
Yokoyama S
(11)
Shirouzu M
(10)
Chua EYD
(9)
Li X
(9)
Richmond TJ
(9)
Tanaka I
(9)
Yao M
(9)
Chen Z
(8)
Feng H
(8)
Fujii Y
(8)
Fukagawa T
(8)
Umehara T
(8)
Wakamori M
(8)
Wang M
(8)
Chua EY
(7)
Harada A
(7)
Hasegawa K
(7)
Hong J
(7)
Hori T
(7)
Ishii S
(7)
Kumarevel T
(7)
Kumasaka T
(7)
Ma Z
(7)
Miya Y
(7)
Morikawa K
(7)
Nakamura A
(7)
Nogami J
(7)
Romier C
(7)
Sato K
(7)
Shinagawa T
(7)
Sivaraman P
(7)
Xu RM
(7)
Yang N
(7)
Zhou BR
(7)
Zhou Z
(7)
Allis DC
(6)
Chimnaronk S
(6)
Chin JW
(6)
Elsasser SJ
(6)
Ghirlando R
(6)
Hartinger CG
(6)
Lewis PW
(6)
Muhammad R
(6)
Nazarov AA
(6)
Oyama T
(6)
Reeve JN
(6)
Rhodes D
(6)
Riedel T
(6)
Sakamoto K
(6)
Sandman K
(6)
Suka N
(6)
Vasudevan D
(6)
Cheeseman IM
(5)
Chen S
(5)
Droge P
(5)
Dröge P
(5)
Gascoigne KE
(5)
Hanif M
(5)
Harata M
(5)
Hayashi-Takanaka Y
(5)
Jakupec MA
(5)
Keppler BK
(5)
Li G
(5)
Liu X
(5)
Meier SM
(5)
Mohideen K
(5)
Moras D
(5)
Murray BS
(5)
Nishino T
(5)
Sakai N
(5)
Sato Y
(5)
More...
Homo / hetero assembly
(2)
hetero
(274)
homo
(29)
Assembly composition
(5)
DNA/protein complex
(184)
protein/protein complex
(82)
protein structure
(29)
RNA/protein complex
(7)
DNA/RNA/protein complex
(1)
Assembly polymer count
(14)
decamer
(146)
dimer
(38)
trimer
(29)
tetramer
(25)
dodecamer
(17)
undecamer
(14)
monomer
(10)
pentamer
(7)
octamer
(6)
hexamer
(3)
icosamer
(3)
tetradecamer
(3)
26-mer
(1)
hexadecamer
(1)
Resolution distribution
1.0 - 1.5
(4)
1.5 - 2
(29)
2.0 - 2.5
(78)
2.5 - 3
(111)
3.0 - 3.5
(47)
3.5 - 4
(25)
4.0 - 4.5
(1)
Release year distribution
1995 - 2000
(12)
2000 - 2005
(43)
2005 - 2010
(66)
2010 - 2015
(129)
2015 - 2020
(116)
Journal
(41)
Nat Commun
(25)
J Mol Biol
(24)
Nucleic Acids Res
(22)
To be published
(18)
Nature
(17)
Proc Natl Acad Sci U S A
(17)
Cell
(16)
Science
(16)
Nat Struct Mol Biol
(15)
Biochemistry
(14)
EMBO J
(13)
Sci Rep
(10)
Structure
(10)
Biochem Biophys Res Commun
(8)
Acta Crystallogr D Biol Crystallogr
(6)
FEBS Open Bio
(6)
J Biol Chem
(6)
Mol Cell Biol
(6)
Open Biol
(6)
Biochim Biophys Acta
(5)
Mol Cell
(5)
Cell Rep
(4)
Chem Sci
(4)
Elife
(4)
Biophys Chem
(3)
Genes Dev
(3)
Proteins
(3)
Chem Biol
(2)
Epigenetics Chromatin
(2)
Nat Chem Biol
(2)
Acta Crystallogr F Struct Biol Commun
(1)
Acta Crystallogr Sect F Struct Biol Cryst Commun
(1)
Angew Chem Int Ed Engl
(1)
Cell Res
(1)
Chemistry
(1)
J Am Chem Soc
(1)
Mol Plant
(1)
Nat Struct Biol
(1)
PLoS Biol
(1)
Protein Cell
(1)
Protein Sci
(1)
Macromolecules
Organism superkingdom
(3)
Eukaryota
(268)
Bacteria
(25)
Archaea
(10)
Organism name
(33)
Homo sapiens
(119)
Xenopus laevis
(98)
Mus musculus
(13)
Saccharomyces cerevisiae S288C
(11)
Gallus gallus
(10)
Drosophila melanogaster
(9)
Saccharomyces cerevisiae
(8)
Methanothermus fervidus
(6)
Staphylococcus aureus
(5)
Alcaligenes faecalis subsp. faecalis
(3)
Aquifex aeolicus
(3)
Thermus thermophilus HB8
(3)
Aspergillus nidulans FGSC A4
(2)
Kluyveromyces lactis NRRL Y-1140
(2)
Pyrococcus horikoshii OT3
(2)
Rhodococcus sp. N-771
(2)
Schizosaccharomyces pombe 972h-
(2)
Xenopus tropicalis
(2)
Aquifex aeolicus VF5
(1)
Arabidopsis thaliana
(1)
Bacteroides ovatus ATCC 8483
(1)
Chaetomium thermophilum var. thermophilum DSM 1495
(1)
Encephalitozoon cuniculi
(1)
Escherichia coli K-12
(1)
Expression vector pET3-H2A
(1)
Lactobacillus acidophilus NCFM
(1)
Methanopyrus kandleri
(1)
Pseudomonas aeruginosa PAO1
(1)
Pseudomonas sp. ATCC 19121
(1)
Pyrococcus horikoshii
(1)
Saccharopolyspora erythraea
(1)
Staphylococcus aureus subsp. aureus Mu50
(1)
Staphylococcus epidermidis ATCC 12228
(1)
Molecule name
(305)
Histone H4
(211)
Histone H3.2
(99)
Histone H2B 1.1
(93)
H2B1.1
(91)
Histone H2A type 1
(77)
Histone H2B.1
(76)
H2B/r
(66)
Histone H2A.2
(66)
Histone H2B type 1-J
(66)
Histone H2B.r
(66)
Histone H2A type 1-B/E
(64)
Histone H2A/a
(64)
Histone H2A/m
(64)
Histone H3.1
(57)
Histone H3/a
(54)
Histone H3/b
(54)
Histone H3/c
(54)
Histone H3/d
(54)
Histone H3/f
(54)
Histone H3/h
(54)
Histone H3/i
(54)
Histone H3/j
(54)
Histone H3/k
(54)
Histone H3/l
(54)
Histone H2A
(21)
Histone H3.3
(20)
Histone H3
(16)
H2A clustered histone 14 L homeolog
(14)
LOC494591 protein
(14)
Histone H2A.Z
(13)
CENP-A
(12)
Centromere autoantigen A
(12)
Centromere protein A
(12)
Histone H3-like centromeric protein A
(12)
CENP-S
(10)
Centromere protein S
(10)
H2A/z
(10)
Suppressor of Ty protein 12
(8)
Apoptosis-inducing TAF9-like domain-containing protein 1
(7)
FANCM-associated histone fold protein 1
(7)
FANCM-interacting histone fold protein 1
(7)
Fanconi anemia-associated polypeptide of 16 kDa
(7)
Histone H2B
(7)
Asp/Glu-ADT subunit C
(6)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C
(6)
DMATase
(6)
H2B.U histone 2
(6)
Histone H2B type 3-A
(6)
IPP transferase
(6)
IPPT
(6)
IPTase
(6)
tRNA dimethylallyltransferase
(6)
Glu-ADT subunit C
(5)
Glutamyl-tRNA(Gln) amidotransferase subunit C
(5)
H3-clustered histone 13
(5)
H3-clustered histone 14
(5)
H3-clustered histone 15
(5)
Histone H2A-IV
(5)
Histone H2A.1
(5)
Histone H2B type 1-A
(5)
Histone H2B, testis
(5)
Histone H3 class I
(5)
Histone H3.3C
(5)
Histone H3/m
(5)
Histone H3/o
(5)
Testis-specific histone H2B
(5)
Uncharacterized protein
(5)
Archaeal histone B
(4)
Aspartate 4-decarboxylase
(4)
Bifunctional aspartate aminotransferase and L-aspartate beta-decarboxylase
(4)
CENP-A homolog
(4)
CENP-T
(4)
CENP-W
(4)
CENPA homolog
(4)
Centromere protein T
(4)
Centromere protein W
(4)
Chromosome segregation protein 4
(4)
DNA-binding protein HMf-2
(4)
H2B VII
(4)
Histone H2A type 1-B
(4)
Histone H2B 7
(4)
Histone H3-like centromeric protein CSE4
(4)
Isopentenyl-diphosphate: tRNA isopentenyltransferase
(4)
Transcription factor CBF/NF-Y/archaeal histone domain-containing protein
(4)
tRNA isopentenyltransferase
(4)
ASD
(3)
Archaeal histone A
(3)
AsdA
(3)
CAAT box DNA-binding protein subunit B
(3)
CAAT box DNA-binding protein subunit C
(3)
NF-YB
(3)
NF-YC
(3)
Nuclear transcription factor Y subunit B
(3)
Nuclear transcription factor Y subunit C
(3)
Nuclear transcription factor Y subunit beta
(3)
Nuclear transcription factor Y subunit gamma
(3)
TSH2B.1
(3)
Transactivator HSM-1/2
(3)
hTSH2B
(3)
ADP-ribosyltransferase diphtheria toxin-like 1
(2)
More...
Molecule type
(1)
Protein
(303)
Gene names
(602)
H4-16
(89)
H4/A
(89)
H4/B
(89)
H4/C
(89)
H4/D
(89)
H4/E
(89)
H4/G
(89)
H4/H
(89)
H4/I
(89)
H4/J
(89)
H4/K
(89)
H4/M
(89)
H4/N
(89)
H4/O
(89)
H4C1
(89)
H4C11
(89)
H4C12
(89)
H4C13
(89)
H4C14
(89)
H4C15
(89)
H4C16
(89)
H4C2
(89)
H4C3
(89)
H4C4
(89)
H4C5
(89)
H4C6
(89)
H4C8
(89)
H4C9
(89)
H4F2
(89)
H4FA
(89)
H4FB
(89)
H4FC
(89)
H4FD
(89)
H4FE
(89)
H4FG
(89)
H4FH
(89)
H4FI
(89)
H4FJ
(89)
H4FK
(89)
H4FM
(89)
H4FN
(89)
H4FO
(89)
HIST1H4A
(89)
HIST1H4B
(89)
HIST1H4C
(89)
HIST1H4D
(89)
HIST1H4E
(89)
HIST1H4F
(89)
HIST1H4H
(89)
HIST1H4I
(89)
HIST1H4J
(89)
HIST1H4K
(89)
HIST1H4L
(89)
HIST2H4
(89)
HIST2H4A
(89)
HIST2H4B
(89)
HIST4H4
(89)
H2BC11
(66)
H2BFR
(66)
HIST1H2BJ
(66)
H2AC4
(64)
H2AC8
(64)
H2AFA
(64)
H2AFM
(64)
HIST1H2AB
(64)
HIST1H2AE
(64)
H3C1
(54)
H3C10
(54)
H3C11
(54)
H3C12
(54)
H3C2
(54)
H3C3
(54)
H3C4
(54)
H3C6
(54)
H3C7
(54)
H3C8
(54)
H3FA
(54)
H3FB
(54)
H3FC HIST1H3C
(54)
H3FD
(54)
H3FF
(54)
H3FH
(54)
H3FI
(54)
H3FJ
(54)
H3FK
(54)
H3FL
(54)
HIST1H3A
(54)
HIST1H3B
(54)
HIST1H3D
(54)
HIST1H3E
(54)
HIST1H3F
(54)
HIST1H3G
(54)
HIST1H3H
(54)
HIST1H3I
(54)
HIST1H3J
(54)
H3-3A
(17)
H3-3B
(17)
H3.3A
(17)
H3.3B
(17)
H3F3
(17)
More...
Interacting Molecules
(191)
Histone H4
(210)
Histone H3.2
(99)
Histone H2B 1.1
(91)
Histone H2A type 1
(77)
Histone H2B type 1-J
(65)
Histone H2A type 1-B/E
(63)
Histone H3.1
(57)
DNA (146-MER)
(46)
DNA (145-MER)
(28)
DNA (147-MER)
(27)
Histone H2A
(21)
Histone H3.3
(20)
Histone H3
(16)
146-MER DNA
(15)
Histone H3-like centromeric protein A
(12)
Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B
(11)
Glutamyl-tRNA(Gln) amidotransferase subunit A
(11)
Palindromic 146bp Human Alpha-Satellite DNA fragment
(11)
Centromere protein X
(10)
Death domain-associated protein 6
(8)
Histone H2A.Z
(8)
Histone H2B
(7)
DNA (167-MER)
(6)
DNA replication licensing factor MCM2
(6)
H2B.U histone 2
(6)
146-mer DNA
(5)
Histone H2A-IV
(5)
Histone H2A.1
(5)
Histone H2B type 1-A
(5)
Histone H2B.1
(5)
Histone H3.3C
(5)
Histone-lysine N-methyltransferase, H3 lysine-79 specific
(5)
Ubiquitin
(5)
Centromere protein T
(4)
Centromere protein W
(4)
Histone H2A type 1-B
(4)
Histone H2B 7
(4)
Regulatory protein SIR3
(4)
Transcription regulatory protein SNF2
(4)
tRNA
(4)
147-MER DNA
(3)
601 DNA Strand 1
(3)
601 DNA Strand 2
(3)
DNA
(3)
Helicase SWR1
(3)
Histone chaperone ASF1
(3)
ISWI chromatin-remodeling complex ATPase ISW1
(3)
Nuclear transcription factor Y subunit beta
(3)
Nuclear transcription factor Y subunit gamma
(3)
Palindromic 146 Base Pair DNA Fragment
(3)
Transcription factor CBF/NF-Y/archaeal histone domain-containing protein
(3)
scFv
(3)
145-mer DNA
(2)
147 mer DNA
(2)
Acidic leucine-rich nuclear phosphoprotein 32 family member E
(2)
Actin-like protein ARP6
(2)
Aspartate--tRNA(Asp/Asn) ligase
(2)
Centromere protein N
(2)
Centromere protein S
(2)
Chromatin accessibility complex 16kD protein
(2)
Core histone macro-H2A.1
(2)
DNA polymerase epsilon subunit 3
(2)
DNA polymerase epsilon subunit C
(2)
FACT complex subunit SPT16
(2)
Fanconi anemia group M protein
(2)
Histone H2A type 1-A
(2)
Histone H2A.2
(2)
Histone H2A.Z-specific chaperone CHZ1
(2)
Histone H2A/H2B/H3 domain-containing protein
(2)
Histone H2B type 1-B
(2)
Histone H2B type 1-C/E/F/G/I
(2)
Histone H2B.2
(2)
Histone H3-like centromeric protein CSE4
(2)
Histone chaperone ASF1A
(2)
Histone chaperone ASF1B
(2)
Histone chaperone asf1
(2)
PALINDROMIC 146 BP DNA REPEAT 8/9 FROM HUMAN X-CHROMOSOME ALPHA SATELLITE DNA
(2)
Palindromic 146bp Human Alpha satellite DNA
(2)
RuvB-like protein 1
(2)
RuvB-like protein 2
(2)
Transcription initiation factor TFIID subunit 11
(2)
Transcription initiation factor TFIID subunit 13
(2)
Transcriptional activator HAP2
(2)
Ubiquitin-like domain-containing protein
(2)
Vacuolar protein sorting-associated protein 71
(2)
Vacuolar protein sorting-associated protein 72
(2)
Vacuolar protein sorting-associated protein 72 homolog
(2)
alpha-satellite DNA
(2)
histone acetyltransferase
(2)
145-MER DNA
(1)
146 NUCLEOTIDES LONG DNA
(1)
147 bp DNA containing 16 bp poly dA element
(1)
147 bp DNA containing 16 bp poly dT element
(1)
147mer DNA
(1)
5'-D(*G*GP*AP*GP*CP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*CP*AP*A)-3'
(1)
5'-D(*TP*TP*GP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*GP*CP*TP*CP*C)-3'
(1)
76mer-tRNA
(1)
CENP-C
(1)
Cell division control protein 42 homolog
(1)
DNA (145-mer)
(1)
More...
Interacting ligands
(52)
MN : MANGANESE (II) ION
(78)
CL : CHLORIDE ION
(58)
SO4 : SULFATE ION
(33)
MG : MAGNESIUM ION
(22)
GOL : GLYCEROL
(12)
PO4 : PHOSPHATE ION
(12)
ZN : ZINC ION
(9)
PLP : PYRIDOXAL-5'-PHOSPHATE
(4)
RUD : [ethane6-3-(p-tolyl)propanoic acid]Ru(1,3,5-triaza-7-phosphaadamantane)Cl2
(4)
ACT : ACETATE ION
(3)
CA : CALCIUM ION
(3)
CAC : CACODYLATE ION
(3)
CIT : CITRIC ACID
(3)
IOD : IODIDE ION
(3)
PT : PLATINUM (II) ION
(3)
BAL : BETA-ALANINE
(2)
PPV : PYROPHOSPHATE
(2)
RAX : dichloro[(1,2,3,4,5,6-eta)-6-methylbenzene]1,3,5-triaza-7lambda~5~-phosphatricyclo[3.3.1.1~3,7~]dec-7-ylruthenium
(2)
RU7 : PARA-CYMENE RUTHENIUM CHLORIDE
(2)
1MK : chlorido(eta-6-p-cymene)(N-fluorophenyl-2-pyridinecarbothioamide)osmium(II)
(1)
1SZ : N-[5-[[4-[[5-[[5-[[5-[[5-[[3-[3-(dimethylamino)propylamino]-3-oxidanylidene-propyl]carbamoyl]-1-methyl-pyrrol-3-yl]carbamoyl]-1-methyl-pyrrol-3-yl]carbamoyl]-1-methyl-pyrrol-3-yl]carbamoyl]-1-methyl-pyrrol-3-yl]amino]-4-oxidanylidene-butyl]carbamoyl]-1-methyl-pyrrol-3-yl]-1-methyl-4-[[1-methyl-4-[(1-methylimidazol-2-yl)carbonylamino]pyrrol-2-yl]carbonylamino]imidazole-2-carboxamide
(1)
4A6 : [(1,2,3,4,5,6-eta)-1-methyl-4-(propan-2-yl)benzene]ruthenium
(1)
ABU : GAMMA-AMINO-BUTANOIC ACID
(1)
AUF : triethylphosphanuidylgold(1+)
(1)
BCN : BICINE
(1)
CO : COBALT (II) ION
(1)
CS : CESIUM ION
(1)
DIB : 3-AMINO-(DIMETHYLPROPYLAMINE)
(1)
DMA : DIMETHYLALLYL DIPHOSPHATE
(1)
DST : DIMETHYLALLYL S-THIOLODIPHOSPHATE
(1)
EDN : ETHANE-1,2-DIAMINE
(1)
EDO : 1,2-ETHANEDIOL
(1)
ELJ : chlorido(eta-6-p-cymene)(N-phenyl-2-pyridinecarbothioamide)osmium(II)
(1)
EOH : ETHANOL
(1)
HRU : (ethane-1,2-diamine-kappa~2~N,N')[(1,2,3,4,5,6-eta)-1-methyl-4-(propan-2-yl)cyclohexane-1,2,3,4,5,6-hexayl]ruthenium
(1)
IMT : 4-AMINO-(1-METHYLIMIDAZOLE)-2-CARBOXYLIC ACID
(1)
MES : 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
(1)
MML : 1-methyl-4-(1-methylethyl)benzene
(1)
NI : NICKEL (II) ION
(1)
PC4 : TETRACHLOROPLATINATE(II)
(1)
PG4 : TETRAETHYLENE GLYCOL
(1)
PMB : PARA-MERCURY-BENZENESULFONIC ACID
(1)
PTW : 1,3,5-triaza-7-phosphatricyclo[3.3.1.1~3,7~]decane
(1)
PYB : 4-AMINO-(1-METHYLPYRROLE)-2-CARBOXYLIC ACID
(1)
RB : RUBIDIUM ION
(1)
RRK : (1R,2R)-1,2-diphenylethane-1,2-diamine
(1)
RSK : (1S,2R)-1,2-diphenylethane-1,2-diamine
(1)
RU : RUTHENIUM ION
(1)
SAM : S-ADENOSYLMETHIONINE
(1)
SSK : (1S,2S)-1,2-diphenylethane-1,2-diamine
(1)
TRS : 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
(1)
UNU : BENZAMIDE
(1)
Function and Biology
EC number / name
(7)
2.5.1.75 : tRNA dimethylallyltransferase
(6)
2.6.1.1 : Aspartate transaminase
(5)
4.1.1.12 : Aspartate 4-decarboxylase
(4)
2.4.2.30 : NAD(+) ADP-ribosyltransferase
(2)
2.7.7.7 : DNA-directed DNA polymerase
(2)
3.5.1.4 : Amidase
(2)
2.3.1.94 : 6-deoxyerythronolide-B synthase
(1)
Biological function
(48)
protein heterodimerization activity
(271)
DNA binding
(246)
structural constituent of chromatin
(227)
protein binding
(199)
RNA binding
(86)
lipopolysaccharide binding
(62)
cadherin binding
(50)
nucleosomal DNA binding
(27)
RNA polymerase II cis-regulatory region sequence-specific DNA binding
(20)
RNA polymerase II core promoter sequence-specific DNA binding
(20)
ATP binding
(17)
identical protein binding
(13)
chromatin binding
(12)
asparaginyl-tRNA synthase (glutamine-hydrolyzing) activity
(11)
glutaminyl-tRNA synthase (glutamine-hydrolyzing) activity
(11)
ligase activity
(11)
chromatin DNA binding
(10)
protein-containing complex binding
(8)
catalytic activity
(7)
cupric reductase (NADH) activity
(7)
nucleic acid binding
(7)
transferase activity
(7)
DNA-binding transcription activator activity, RNA polymerase II-specific
(6)
double-stranded DNA binding
(6)
histone binding
(6)
protein homodimerization activity
(6)
sequence-specific DNA binding
(6)
tRNA dimethylallyltransferase activity
(6)
transferase activity, transferring alkyl or aryl (other than methyl) groups
(6)
zinc ion binding
(6)
L-aspartate:2-oxoglutarate aminotransferase activity
(5)
pyridoxal phosphate binding
(5)
transaminase activity
(5)
aspartate 4-decarboxylase activity
(4)
carboxy-lyase activity
(4)
metal ion binding
(4)
tRNA binding
(4)
RNA polymerase II general transcription initiation factor activity
(3)
molecular adaptor activity
(3)
DNA-binding transcription factor activity
(2)
TBP-class protein binding
(2)
actin binding
(2)
general transcription initiation factor activity
(2)
nucleosome binding
(2)
small GTPase binding
(2)
guanyl-nucleotide exchange factor activity
(1)
lyase activity
(1)
molecular_function
(1)
Biological process
(110)
nucleosome assembly
(113)
chromatin organization
(107)
protein localization to CENP-A containing chromatin
(94)
heterochromatin formation
(93)
negative regulation of megakaryocyte differentiation
(92)
telomere organization
(88)
defense response to bacterium
(67)
antibacterial humoral response
(66)
antimicrobial humoral immune response mediated by antimicrobial peptide
(66)
defense response to Gram-positive bacterium
(66)
innate immune response in mucosa
(66)
negative regulation of cell population proliferation
(64)
defense response to Gram-negative bacterium
(63)
killing of cells of another organism
(63)
negative regulation of tumor necrosis factor-mediated signaling pathway
(62)
gene expression
(51)
epigenetic regulation of gene expression
(50)
positive regulation of cell growth
(17)
regulation of DNA-templated transcription
(17)
cell population proliferation
(16)
embryo implantation
(16)
male gonad development
(16)
multicellular organism growth
(16)
muscle cell differentiation
(16)
negative regulation of chromosome condensation
(16)
nucleus organization
(16)
oocyte maturation
(16)
oogenesis
(16)
osteoblast differentiation
(16)
pericentric heterochromatin formation
(16)
regulation of centromere complex assembly
(16)
single fertilization
(16)
spermatid development
(16)
spermatogenesis
(16)
subtelomeric heterochromatin formation
(16)
kinetochore assembly
(14)
cell division
(13)
CENP-A containing chromatin assembly
(11)
glutaminyl-tRNAGln biosynthesis via transamidation
(11)
regulation of translational fidelity
(11)
translation
(11)
DNA repair
(10)
establishment of mitotic spindle orientation
(9)
mitotic cytokinesis
(9)
protein localization to chromosome, centromeric region
(9)
negative regulation of transcription by RNA polymerase II
(8)
aerobic respiration
(7)
global genome nucleotide-excision repair
(7)
intracellular copper ion homeostasis
(7)
nucleolar large rRNA transcription by RNA polymerase I
(7)
positive regulation of transcription by RNA polymerase I
(7)
rRNA transcription
(7)
sexual sporulation resulting in formation of a cellular spore
(7)
DNA topological change
(6)
cellular response to estradiol stimulus
(6)
positive regulation of transcription by RNA polymerase II
(6)
tRNA modification
(6)
tRNA processing
(6)
DNA damage response
(5)
amino acid metabolic process
(5)
biosynthetic process
(5)
chromosome organization
(5)
inflammatory response
(5)
mononuclear cell migration
(5)
nucleosome disassembly
(5)
plasminogen activation
(5)
sperm DNA condensation
(5)
DNA-templated DNA replication
(4)
RNA polymerase II preinitiation complex assembly
(4)
alanine biosynthetic process
(4)
amino acid biosynthetic process
(4)
aspartate metabolic process
(4)
chromosome segregation
(4)
larval somatic muscle development
(4)
leading strand elongation
(4)
mitotic cell cycle
(4)
postreplication repair
(4)
protein homooligomerization
(4)
replication fork processing
(3)
resolution of meiotic recombination intermediates
(3)
transcription initiation at RNA polymerase II promoter
(3)
CMG complex assembly
(2)
DNA replication
(2)
DNA replication-dependent chromatin assembly
(2)
DNA strand elongation involved in mitotic DNA replication
(2)
DNA-templated transcription initiation
(2)
actin cytoskeleton organization
(2)
cellular component organization
(2)
cellular response to gamma radiation
(2)
chromatin remodeling
(2)
transcription by RNA polymerase II
(2)
RNA catabolic process
(1)
cellular response to heat
(1)
fibroblast proliferation
(1)
in utero embryonic development
(1)
mRNA 3'-end processing
(1)
mRNA processing
(1)
mismatch repair
(1)
negative regulation of gene expression
(1)
positive regulation of fibroblast proliferation
(1)
More...
Biological cell component
(49)
nucleosome
(227)
nucleus
(220)
chromosome
(209)
nucleoplasm
(180)
CENP-A containing nucleosome
(102)
protein-containing complex
(94)
extracellular exosome
(91)
chromosome, telomeric region
(89)
extracellular region
(88)
membrane
(87)
cytosol
(76)
extracellular space
(66)
plasma membrane
(62)
chromosome, centromeric region
(28)
chromatin
(23)
Barr body
(20)
inner kinetochore
(16)
FANCM-MHF complex
(11)
cytoplasm
(11)
CENP-A containing chromatin
(9)
condensed chromosome, centromeric region
(9)
pericentric heterochromatin
(9)
replication fork protection complex
(9)
euchromatin
(8)
RNA polymerase I upstream activating factor complex
(7)
female germ cell nucleus
(7)
CCAAT-binding factor complex
(6)
heterochromatin
(6)
RCAF complex
(5)
cell surface
(5)
nuclear chromosome
(5)
polytene chromosome
(5)
transcription factor TFIID complex
(5)
epsilon DNA polymerase complex
(4)
kinetochore
(4)
mitochondrion
(4)
nucleolus
(4)
polytene chromosome band
(4)
ATAC complex
(3)
CHRAC
(2)
SAGA complex
(2)
negative cofactor 2 complex
(2)
nuclear replication fork
(2)
FACT complex
(1)
RNA polymerase II transcription regulator complex
(1)
SLIK (SAGA-like) complex
(1)
mitotic spindle
(1)
pilus shaft
(1)
ribonuclease H2 complex
(1)
Compound cofactor class
(1)
Pyridoxal 5'-phosphate
(4)
Sequence and Structure classification
SCOP fold
(5)
Histone-fold
(60)
Non-globular all-alpha subunits of globular proteins
(5)
DNA/RNA-binding 3-helical bundle
(2)
HLH-like
(1)
alpha-alpha superhelix
(1)
SCOP family
(8)
Nucleosome core histones
(41)
TBP-associated factors, TAFs
(9)
Archaeal histone
(7)
Glu-tRNAGln amidotransferase C subunit
(5)
Bacterial histone-fold protein
(3)
Hypothetical protein PH1932
(2)
Diap1 N-terninal region-like
(1)
Docking domain B of the erythromycin polyketide synthase (DEBS)
(1)
CATH class
(4)
Mainly Alpha
(302)
Alpha Beta
(13)
Mainly Beta
(6)
Special
(2)
CATH topology
(18)
Histone, subunit A
(303)
Rossmann fold
(6)
Aspartate Aminotransferase, domain 1
(5)
Double Stranded RNA Binding Domain
(4)
N-terminal domain of TfIIb
(3)
Amidase signature (AS) enzymes
(2)
Arc Repressor Mutant, subunit A
(2)
Leucine-rich Repeat Variant
(2)
PH-domain like
(2)
Recoverin; domain 1
(2)
Aspartate Aminotransferase; domain 2
(1)
Dbl Homology Domain; Chain A
(1)
Helicase, Ruva Protein; domain 3
(1)
Helix Hairpins
(1)
Immunoglobulin-like
(1)
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(1)
Son of Sevenless (SoS) protein; Chain S, domain 2
(1)
Son of sevenless (SoS) protein; Chain S, domain 1
(1)
Pfam accession / name
(33)
PF00125 : Histone
(232)
PF15511 : CENP-T_C
(215)
PF16211 : Histone_H2A_C
(196)
PF00808 : CBFD_NFYB_HMF
(20)
PF02686 : GatC
(11)
PF15630 : CENP-S
(11)
PF01715 : IPPT
(6)
PF00155 : Aminotran_1_2
(5)
PF15510 : CENP-W
(4)
PF09123 : DUF1931
(3)
PF01022 : HTH_5
(2)
PF01425 : Amidase
(2)
PF02269 : TFIID-18kDa
(2)
PF04719 : TAFII28
(2)
PF06367 : Drf_FH3
(2)
PF06371 : Drf_GBD
(2)
PF08063 : PADR1_Zn_ribbon
(2)
PF21728 : PADR1_N
(2)
PF00617 : RasGEF
(1)
PF00618 : RasGEF_N
(1)
PF00621 : RhoGEF
(1)
PF02291 : TFIID-31kDa
(1)
PF02969 : TAF
(1)
PF03847 : TFIID_20kDa
(1)
PF07524 : Bromo_TP
(1)
PF08512 : Rttp106-like_middle
(1)
PF08644 : SPT16
(1)
PF09415 : CENP-X
(1)
PF09468 : RNase_H2-Ydr279
(1)
PF10384 : Scm3
(1)
PF14304 : CSTF_C
(1)
PF17745 : Ydr279_N
(1)
PF22697 : SOS1_NGEF_PH
(1)
Experimental Information
Diffraction protocol
(2)
Single wavelength
(253)
MAD
(10)
Diffraction radiation source type
(2)
Synchrotron
(252)
Rotating anode
(15)
Diffraction source
(59)
SPRING-8 BEAMLINE BL41XU
(44)
SLS BEAMLINE X06SA
(21)
SLS BEAMLINE X06DA
(19)
APS BEAMLINE 24-ID-E
(13)
ALS BEAMLINE 5.0.2
(12)
SSRF BEAMLINE BL17U
(11)
PHOTON FACTORY BEAMLINE BL-17A
(10)
RIGAKU
(10)
ALS BEAMLINE 4.2.2
(8)
SPRING-8 BEAMLINE BL32XU
(8)
ALS BEAMLINE 8.2.2
(7)
APS BEAMLINE 23-ID-D
(7)
PHOTON FACTORY BEAMLINE BL-1A
(7)
NSLS BEAMLINE X29A
(6)
PHOTON FACTORY BEAMLINE AR-NW12A
(6)
APS BEAMLINE 24-ID-C
(5)
SPRING-8 BEAMLINE BL38B1
(5)
APS BEAMLINE 21-ID-F
(4)
APS BEAMLINE 21-ID-G
(4)
SPRING-8 BEAMLINE BL44XU
(4)
SSRF BEAMLINE BL19U1
(4)
APS BEAMLINE 19-ID
(3)
APS BEAMLINE 23-ID-B
(3)
ESRF BEAMLINE ID29
(3)
PHOTON FACTORY BEAMLINE BL-5A
(3)
RIGAKU RUH3R
(3)
SOLEIL BEAMLINE PROXIMA 1
(3)
EMBL/DESY, HAMBURG BEAMLINE X31
(2)
ESRF BEAMLINE BM02
(2)
ESRF BEAMLINE ID09
(2)
ESRF BEAMLINE ID14-4
(2)
ESRF BEAMLINE ID23-2
(2)
NSLS BEAMLINE X12C
(2)
SLS BEAMLINE X10SA
(2)
SPRING-8 BEAMLINE BL26B1
(2)
SSRL BEAMLINE BL7-1
(2)
APS BEAMLINE 22-ID
(1)
DIAMOND BEAMLINE I03
(1)
DIAMOND BEAMLINE I24
(1)
EMBL/DESY, HAMBURG BEAMLINE BW7A
(1)
EMBL/DESY, HAMBURG BEAMLINE X11
(1)
ESRF BEAMLINE BM30A
(1)
ESRF BEAMLINE ID13
(1)
ESRF BEAMLINE ID14-1
(1)
ESRF BEAMLINE ID14-2
(1)
ESRF BEAMLINE ID14-3
(1)
ESRF BEAMLINE ID23-1
(1)
NSLS BEAMLINE X4C
(1)
NSRRC BEAMLINE BL13B1
(1)
NSRRC BEAMLINE BL17B2
(1)
RIGAKU MICROMAX-007 HF
(1)
RIGAKU RUH2R
(1)
SPRING-8 BEAMLINE BL44B2
(1)
SRS BEAMLINE PX10.1
(1)
SRS BEAMLINE PX14.2
(1)
SRS BEAMLINE PX7.2
(1)
SRS BEAMLINE PX9.5
(1)
SSRF BEAMLINE BL17U1
(1)
SSRF BEAMLINE BL18U1
(1)
Synchrotron site
(14)
SPring-8
(63)
SLS
(42)
APS
(36)
ALS
(27)
Photon Factory
(26)
ESRF
(17)
SSRF
(17)
NSLS
(9)
EMBL/DESY, Hamburg
(4)
SOLEIL
(3)
SRS
(3)
Diamond
(2)
NSRRC
(2)
SSRL
(2)
Diffraction detector type
(3)
CCD
(187)
Pixel
(46)
Image plate
(26)
Refinement software
(9)
PHENIX
(115)
CNS
(92)
REFMAC
(73)
BUSTER
(6)
SHELXL-97
(2)
X-PLOR
(2)
BUSTER-TNT
(1)
PROFFT
(1)
phenix.real_space_refine
(1)
EM microscope model
(3)
FEI TITAN KRIOS
(18)
FEI TITAN
(6)
FEI TECNAI ARCTICA
(1)
EM detector name
(4)
GATAN K2 SUMMIT (4k x 4k)
(17)
FEI FALCON III (4k x 4k)
(3)
GATAN K2 QUANTUM (4k x 4k)
(3)
FEI FALCON II (4k x 4k)
(2)
NMR
NMR software packages
(16)
NMRPipe
(4)
NMRView
(4)
TALOS
(4)
Xplor-NIH
(4)
PROCHECK / PROCHECK-NMR
(3)
ANSIG
(2)
MOLMOL
(2)
NMRDraw
(2)
Azara
(1)
CNS
(1)
CS-ROSETTA
(1)
CYANA
(1)
MolProbity
(1)
PIPP
(1)
Sparky
(1)
TopSpin
(1)
NMR Field Strength
400.0 - 500
(4)
500.0 - 600
(6)
600.0 - 700
(6)
700.0 - 800
(6)
800.0 - 900
(4)
900.0 - 1000
(2)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
...
Entries 1 to 10 of 303
Select all entries on this page
The complex of ISWI-nucleosome in the ADP.BeF-bound state
Yan LJ, Wu H, Li XM, Gao N, Chen ZC
Nat Struct Mol Biol
(2019)
[PMID: 30872815 ]
Assembly composition: DNA/protein complex
PDBe complex ID:
PDB-CPX-104613 (Preferred)
search this ID
the crosslinked complex of ISWI-nucleosome in the ADP-bound state
Yan LJ, Wu H, Li XM, Gao N, Chen ZC
Nat Struct Mol Biol
(2019)
[PMID: 30872815 ]
Assembly composition: DNA/protein complex
PDBe complex ID:
PDB-CPX-120031 (Preferred)
search this ID
Structure of Snf2-MMTV-A nucleosome complex at shl2 in ADP state
Li M, Xia X, Liu X, Li X, Chen Z
Nature
(2019)
[PMID: 30867599 ]
Assembly composition: DNA/protein complex
PDBe complex ID:
PDB-CPX-120043 (Preferred)
search this ID
Structure of Dot1L-H2BK120ub nucleosome complex
Anderson CJ, Baird MR, Hsu A, Barbour EH, Koyama Y, Borgnia MJ, McGinty RK
Cell Rep
(2019)
[PMID: 30759380 ]
Assembly composition: DNA/protein complex
PDBe complex ID:
PDB-CPX-120349 (Preferred)
search this ID
Dot1L bound to the H2BK120 Ubiquitinated nucleosome
Valencia-Sanchez MI, De Ioannes PE, Miao W, Vasilyev N, Chen R, Nudler E, Armache J-P, Armache K-J
Mol Cell
(2019)
[PMID: 30981630 ]
Assembly composition: DNA/protein complex
PDBe complex ID:
PDB-CPX-120373 (Preferred)
search this ID
Poised-state Dot1L bound to the H2B-Ubiquitinated nucleosome
Worden EJ, Hoffmann NA, Wolberger C
Cell
(2019)
[PMID: 30765112 ]
Assembly composition: DNA/protein complex
PDBe complex ID:
PDB-CPX-120350 (Preferred)
search this ID
Cryo-EM structure of the centromeric nucleosome with native alpha satellite DNA
Zhou B-R
Nat Commun
(2019)
[PMID: 31127102 ]
Source organism: Homo sapiens
Assembly composition: DNA/protein complex
Assembly name:
CENP-A nucleosome complex and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-120362 (Preferred)
search this ID
Active state Dot1L bound to the H2B-Ubiquitinated nucleosome, 2-to-1 complex
Worden EJ, Hoffmann NA, Wolberger C
Cell
(2019)
[PMID: 30765112 ]
Assembly composition: DNA/protein complex
PDBe complex ID:
PDB-CPX-279172 (Preferred)
search this ID
Structure of Snf2-MMTV-A nucleosome complex at shl-2 in ADP state
Li M, Xia X, Liu X, Li X, Chen Z
Nature
(2019)
[PMID: 30867599 ]
Assembly composition: DNA/protein complex
PDBe complex ID:
PDB-CPX-238536 (Preferred)
search this ID
The crosslinked complex of ISWI-nucleosome in the ADP.BeF-bound state
Yan LJ, Wu H, Li XM, Gao N, Chen ZC
Nat Struct Mol Biol
(2019)
[PMID: 30872815 ]
Assembly composition: DNA/protein complex
PDBe complex ID:
PDB-CPX-104612 (Preferred)
search this ID
...
Entries 1 to 10 of 303