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Entry Information
Entry status
(1)
Experimental methods
(3)
X-ray diffraction
(597)
Solution NMR
(145)
Electron Microscopy
(29)
Authors
(1908)
Baulard AR
(57)
Cramer P
(56)
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
(54)
Yokoyama S
(53)
Midwest Center for Structural Genomics (MCSG)
(49)
Joachimiak A
(47)
Kornberg RD
(43)
Bushnell DA
(42)
Willand N
(42)
Johnson RC
(40)
Hinrichs W
(38)
Deprez B
(37)
Kigawa T
(37)
Koshiba S
(35)
Wang D
(31)
Inoue M
(30)
Wintjens R
(30)
Wohlkonig A
(30)
Wohlkönig A
(30)
Brennan RG
(29)
Brodin P
(29)
Flipo M
(29)
Soror SH
(29)
Abell C
(28)
Blundell TL
(28)
Savchenko A
(27)
Blaszczyk M
(26)
Palm GJ
(26)
Villemagne B
(25)
Déprez B
(24)
Westover KD
(23)
Huang X
(22)
Villeret V
(22)
Brown MH
(21)
Cascio D
(21)
Cheung AC
(21)
Skurray RA
(21)
Cheung ACM
(20)
Ohnishi S
(20)
Schumacher MA
(20)
Delorme V
(18)
Meyer F
(18)
Moune M
(18)
Nikiforov PO
(18)
Peree H
(18)
Perée H
(18)
Prevet H
(18)
Surade S
(18)
Tanina A
(18)
Tochio N
(18)
Hillen W
(17)
Minor W
(17)
Stella S
(17)
Werten S
(17)
Locht C
(16)
Nishimura Y
(16)
Brueckner F
(15)
Ogata K
(15)
Sainsbury S
(15)
Edwards A
(14)
Edwards AM
(14)
Leroux F
(14)
Liu X
(14)
Muller CW
(14)
Müller CW
(14)
Chruszcz M
(13)
Kaplan CD
(13)
Saenger W
(13)
Xu X
(13)
Baulard A
(12)
Muller YA
(12)
Sarai A
(12)
Silva DA
(12)
Zhang R
(12)
Blondiaux N
(11)
Dirie B
(11)
Ishii S
(11)
Joint Center for Structural Genomics (JCSG)
(11)
Jolma A
(11)
Koclega KD
(11)
Morgunova E
(11)
Northeast Structural Genomics Consortium (NESG)
(11)
Pabo CO
(11)
Popov A
(11)
St Maurice M
(11)
Taipale J
(11)
Tan K
(11)
Wolberger C
(11)
Yin Y
(11)
Yuan HS
(11)
Zhang Q
(11)
Brooks BE
(10)
Chong J
(10)
Desroses M
(10)
Dickerson RE
(10)
Hancock SP
(10)
Lens Z
(10)
Lietzan AD
(10)
Mendes V
(10)
Montelione GT
(10)
More...
Homo / hetero assembly
(2)
homo
(446)
hetero
(325)
Assembly composition
(6)
protein structure
(446)
DNA/protein complex
(173)
DNA/RNA/protein complex
(99)
protein/protein complex
(49)
RNA/protein complex
(3)
DNA/DNA/RNA hybrid/protein complex
(1)
Assembly polymer count
(23)
dimer
(270)
monomer
(164)
tetramer
(98)
trimer
(66)
pentadecamer
(34)
tridecamer
(32)
dodecamer
(26)
hexadecamer
(11)
hexamer
(11)
decamer
(9)
heptadecamer
(9)
octamer
(8)
tetradecamer
(8)
pentamer
(5)
undecamer
(5)
23-mer
(4)
icosamer
(3)
21-mer
(2)
22-mer
(2)
26-mer
(1)
nonadecamer
(1)
nonamer
(1)
octadecamer
(1)
Resolution distribution
0.5 - 1
(1)
1.0 - 1.5
(14)
1.5 - 2
(163)
2.0 - 2.5
(146)
2.5 - 3
(128)
3.0 - 3.5
(107)
3.5 - 4
(67)
Release year distribution
1990 - 1995
(29)
1995 - 2000
(65)
2000 - 2005
(137)
2005 - 2010
(271)
2010 - 2015
(225)
2015 - 2020
(176)
Journal
(61)
To be published
(154)
J Mol Biol
(62)
Science
(49)
Nature
(41)
EMBO J
(35)
Proc Natl Acad Sci U S A
(34)
Nucleic Acids Res
(33)
Cell
(31)
Biochemistry
(30)
Mol Cell
(29)
Biochim Biophys Acta Proteins Proteom
(23)
J Biol Chem
(23)
Genes Dev
(16)
Proteins
(15)
Org Biomol Chem
(14)
Nat Struct Mol Biol
(13)
Protein Sci
(13)
ACS Chem Biol
(12)
FEBS J
(12)
Structure
(12)
J Med Chem
(10)
Nat Struct Biol
(9)
PLoS One
(9)
Elife
(8)
Front Pharmacol
(8)
Biochem Biophys Res Commun
(7)
Cell Rep
(4)
J Am Chem Soc
(4)
Leukemia
(4)
Biophys J
(3)
Chembiochem
(3)
Cryst Growth Des
(3)
J Biomol NMR
(3)
J Struct Biol
(3)
Nat Commun
(3)
Nat Med
(3)
Acta Crystallogr D Biol Crystallogr
(2)
Angew Chem Int Ed Engl
(2)
Arch Biochem Biophys
(2)
BMC Struct Biol
(2)
Biopolymers
(2)
EMBO Rep
(2)
J Bacteriol
(2)
J Biol Inorg Chem
(2)
PLoS Biol
(2)
PLoS Pathog
(2)
Acta Crystallogr F Struct Biol Commun
(1)
Biochem Soc Trans
(1)
Biochim Biophys Acta
(1)
C. R. Chimie
(1)
Eur J Biochem
(1)
FEBS Open Bio
(1)
J Struct Funct Genomics
(1)
J. Biol. Chem.
(1)
Metab Eng
(1)
Mol Biol (Mosk)
(1)
Mol Microbiol
(1)
Nat Biotechnol
(1)
Nat Cell Biol
(1)
Plant Cell
(1)
Sci Rep
(1)
Macromolecules
Organism superkingdom
(4)
Eukaryota
(402)
Bacteria
(346)
Viruses
(14)
Archaea
(10)
Organism name
(98)
Homo sapiens
(131)
Saccharomyces cerevisiae
(102)
Escherichia coli
(67)
Drosophila melanogaster
(49)
Saccharomyces cerevisiae S288C
(41)
Mus musculus
(37)
Escherichia coli K-12
(31)
Mycobacterium tuberculosis
(26)
Mycobacterium tuberculosis CDC1551
(25)
Staphylococcus aureus
(22)
Mycobacterium tuberculosis H37Rv
(21)
Rhizobium etli CFN 42
(11)
Streptomyces coelicolor
(11)
Arabidopsis thaliana
(10)
Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
(9)
Rhodococcus jostii RHA1
(8)
Streptomyces coelicolor A3(2)
(8)
Escherichia virus Mu
(6)
Staphylococcus aureus subsp. aureus Mu50
(6)
Thermotoga maritima
(6)
Aquifex aeolicus
(5)
Campylobacter jejuni
(5)
Rattus norvegicus
(5)
Shigella virus Sf6
(5)
Trichomonas vaginalis
(5)
Aquifex aeolicus VF5
(4)
Bacillus cereus
(4)
Bacillus subtilis
(4)
Mycobacterium tuberculosis H37Ra
(4)
Pseudomonas aeruginosa
(4)
Saccharolobus shibatae
(4)
Streptomyces antibioticus
(4)
Alkalihalobacillus halodurans C-125
(3)
Bacillus cereus ATCC 14579
(3)
Bacillus subtilis subsp. subtilis str. 168
(3)
Caenorhabditis elegans
(3)
Komagataella phaffii GS115
(3)
Myxococcus xanthus DK 1622
(3)
Sus scrofa
(3)
Thermotoga maritima MSB8
(3)
Agrobacterium fabrum str. C58
(2)
Bos taurus
(2)
Bradyrhizobium diazoefficiens
(2)
Corynebacterium glutamicum
(2)
Gallus gallus
(2)
Pseudomonas aeruginosa PAO1
(2)
Pseudomonas fluorescens A506
(2)
Saccharolobus solfataricus P2
(2)
Salmonella enterica subsp. enterica serovar Typhimurium
(2)
Schizosaccharomyces pombe
(2)
Vibrio cholerae
(2)
Vibrio cholerae O395
(2)
Antirrhinum majus
(1)
Avian myeloblastosis virus
(1)
Bacillus thuringiensis
(1)
Bacteroides thetaiotaomicron
(1)
Bordetella parapertussis 12822
(1)
Burkholderia pseudomallei 1710b
(1)
Cereibacter sphaeroides
(1)
Chromobacterium violaceum
(1)
Clostridium perfringens
(1)
Corynebacterium glutamicum ATCC 13032
(1)
Cytophaga hutchinsonii ATCC 33406
(1)
Drosophila subobscura
(1)
Enterobacteria phage HK620
(1)
Enterococcus faecalis V583
(1)
Escherichia coli CFT073
(1)
Fusobacterium nucleatum subsp. nucleatum
(1)
Geobacter sulfurreducens
(1)
Haemophilus influenzae
(1)
Hyperthermus butylicus DSM 5456
(1)
Klebsiella pneumoniae
(1)
Lactococcus lactis subsp. lactis Il1403
(1)
Listeria innocua
(1)
Mannheimia haemolytica
(1)
Mesocricetus auratus
(1)
Methanothermobacter thermautotrophicus
(1)
Nicotiana glutinosa
(1)
Nicotiana tabacum
(1)
Pasteurella multocida
(1)
Proteus mirabilis
(1)
Pseudomonas sp.
(1)
Pseudomonas syringae pv. tomato str. DC3000
(1)
Rattus rattus
(1)
Rhodopseudomonas palustris CGA009
(1)
Schizosaccharomyces pombe 972h-
(1)
Staphylococcus haemolyticus
(1)
Streptococcus mutans UA159
(1)
Streptomyces alboniger
(1)
Streptomyces griseus
(1)
Sulfolobus acidocaldarius
(1)
Sulfolobus islandicus rod-shaped virus 1
(1)
Thermobifida fusca YX
(1)
Thermococcus kodakarensis KOD1
(1)
Thermus thermophilus HB8
(1)
Trichormus variabilis ATCC 29413
(1)
Xenopus laevis
(1)
synthetic construct
(1)
Molecule name
(516)
DNA-directed RNA polymerases I, II, and III subunit RPABC5
(135)
RNA polymerases I, II, and III subunit ABC5
(131)
ABC10-beta
(126)
DNA-directed RNA polymerases I, II, and III 8.3 kDa polypeptide
(126)
ABC8
(125)
HTH tetR-type domain-containing protein
(80)
HTH-type transcriptional regulator EthR
(69)
Tetracycline repressor protein class D
(40)
DNA-binding protein Fis
(29)
Factor-for-inversion stimulation protein
(29)
Hin recombinational enhancer-binding protein
(29)
HTH-type transcriptional regulator QacR
(28)
Transcriptional regulator, TetR family
(20)
Proto-oncogene c-Myb
(16)
Transcriptional activator Myb
(16)
Segmentation polarity homeobox protein engrailed
(12)
Pyruvate carboxylase
(11)
Pyruvate carboxylase protein
(11)
Tetracycline repressor protein class B from transposon Tn10
(11)
BRAF35-HDAC complex protein BHC110
(9)
Dpbx
(9)
Flavin-containing amine oxidase domain-containing protein 2
(9)
Homeobox protein extradenticle
(9)
Lysine-specific histone demethylase 1A
(9)
Transcriptional regulator
(9)
[histone H3]-dimethyl-L-lysine(4) FAD-dependent demethylase 1A
(9)
DNA-directed RNA polymerase subunit N
(8)
DNA-directed RNA polymerase subunit Rpo10
(8)
DNA-invertase hin
(8)
Homeotic protein antennapedia
(8)
TetR-family transcriptional regulator
(8)
Homeobox protein Hox-B13
(7)
NF-A1
(7)
OTF-1
(7)
Oct-1
(7)
Octamer-binding protein 1
(7)
Octamer-binding transcription factor 1
(7)
POU domain, class 2, transcription factor 1
(7)
Alpha-2 repressor
(6)
MATa1 protein
(6)
MATalpha2 protein
(6)
Mating-type protein ALPHA2
(6)
Transposon Tn1000 resolvase
(6)
Transposon gamma-delta resolvase
(6)
CmeR
(5)
DDE-recombinase A
(5)
DDE-transposase A
(5)
DNA-directed RNA polymerase III subunit L
(5)
Gene 1 protein
(5)
Gene product 03
(5)
Gene product A
(5)
MuA
(5)
Multidrug efflux system transcriptional regulator CmeR
(5)
TTAGGG repeat-binding factor 2
(5)
Telomeric DNA-binding protein
(5)
Telomeric repeat-binding factor 2
(5)
Transcriptional regulator (TetR/AcrR family)
(5)
Transcriptional repressor
(5)
Uncharacterized protein
(5)
gp03
(5)
gpA
(5)
ADA2-like protein
(4)
ATP-dependent helicase CHD1
(4)
DNA-binding protein fis
(4)
Double homeobox protein 10
(4)
Double homeobox protein 4
(4)
Gastrulation and brain-specific homeobox protein 1
(4)
HTH araC/xylS-type domain-containing protein
(4)
HTH-type transcriptional regulator RutR
(4)
Hemolysin II regulatory protein
(4)
Homeobox protein GBX-1
(4)
Homeobox protein Meis2
(4)
Homeobox protein NK-2
(4)
Homeobox protein PBX1
(4)
Homeobox protein abdominal-B
(4)
Homeobox protein vnd
(4)
Homeotic protein ultrabithorax
(4)
IAB-7
(4)
Infraabdominal 7
(4)
Mating-type protein A1
(4)
Meis1-related protein 1
(4)
NIMA-interacting protein 2
(4)
P3
(4)
PH189
(4)
Pre-B-cell leukemia transcription factor 1
(4)
Protein ventral nervous system defective
(4)
Putative repressor SimReg2
(4)
RNA polymerase sigma factor RpoN
(4)
Rut operon repressor
(4)
Sim16
(4)
TCP pilus virulence regulatory protein
(4)
TTAGGG repeat-binding factor 1
(4)
Telomeric protein Pin2/TRF1
(4)
Telomeric repeat-binding factor 1
(4)
TetR-family transcriptional regulatory repressor protein
(4)
Transcriptional adapter 2-alpha
(4)
Transcriptional adapter 2-like
(4)
Transcriptional regulator (NtrC family)
(4)
5'-TG-3'-interacting factor 1
(3)
ALL1-responsive protein ARP1
(3)
More...
Molecule type
(1)
Protein
(771)
Gene names
(575)
1
(5)
RPB10
(125)
YOR210W
(125)
ethR
(73)
Rv3855
(69)
etaR
(69)
tetR
(46)
JW3229
(29)
b3261
(29)
fis
(29)
qacR
(28)
Myb
(16)
SAP100B_005
(14)
SAP104C_022
(14)
SAVP031
(13)
CG9015
(12)
en
(12)
rpoN
(12)
RHE_CH04002
(11)
pyc
(11)
AOF2
(9)
Antp
(9)
CG8933
(9)
KDM1
(9)
KDM1A
(9)
KIAA0601
(9)
LSD1
(9)
TM_1030
(9)
exd
(9)
CG1028
(8)
STM2772
(8)
hin
(8)
rpo10
(8)
HOXB13
(7)
OCT1
(7)
OTF1
(7)
POU2F1
(7)
ALPHA-2
(6)
ECOK12F009
(6)
MAT2A
(6)
MATAL2
(6)
MATALPHA2
(6)
YCR039C
(6)
YCR39C
(6)
tnpR
(6)
A
(5)
CmeR
(5)
E8P16_04135
(5)
E8P16_10565
(5)
F8Y55_09710
(5)
GNO00_03935
(5)
Mup03
(5)
POLR2L
(5)
QQI97_001039
(5)
TERF2
(5)
TRBF2
(5)
TRF2
(5)
cmeR
(5)
Abd-B
(4)
CG10291
(4)
CG10388
(4)
CG6172
(4)
CHD1
(4)
DUX10
(4)
DUX4
(4)
GBX1
(4)
J5U23_00180
(4)
MAT1A
(4)
MATA1
(4)
MEIS2
(4)
MRA_3895
(4)
MRG1
(4)
NK2
(4)
PIN2
(4)
RAP1
(4)
TERF1
(4)
TRBF1
(4)
TRF
(4)
TRF1
(4)
Ubx
(4)
aq_599
(4)
hlyIIR
(4)
rutR
(4)
sim16
(4)
simReg2
(4)
tcpN
(4)
toxT
(4)
vnd
(4)
ARP1
(3)
ATBF1
(3)
At4g28610
(3)
BH3102
(3)
BSU28550
(3)
C16orf47
(3)
CG3935
(3)
CTG26
(3)
GRF1
(3)
JW0998
(3)
JW2201
(3)
MXAN_4263
(3)
More...
Interacting Molecules
(556)
DNA-directed RNA polymerases I, II, and III subunit RPABC3
(137)
DNA-directed RNA polymerases I, II, and III subunit RPABC1
(134)
DNA-directed RNA polymerases I, II, and III subunit RPABC2
(134)
DNA-directed RNA polymerases I, II, and III subunit RPABC4
(131)
DNA-directed RNA polymerase II subunit RPB9
(111)
DNA-directed RNA polymerase II subunit RPB2
(108)
DNA-directed RNA polymerase II subunit RPB3
(108)
DNA-directed RNA polymerase II subunit RPB1
(107)
DNA-directed RNA polymerase II subunit RPB11
(105)
DNA-directed RNA polymerase II subunit RPB4
(53)
DNA-directed RNA polymerase II subunit RPB7
(53)
DNA-directed RNA polymerases I and III subunit RPAC1
(23)
DNA-directed RNA polymerases I and III subunit RPAC2
(23)
DNA (27-MER)
(18)
DNA-directed RNA polymerase I subunit RPA12
(17)
DNA-directed RNA polymerase I subunit RPA135
(17)
DNA-directed RNA polymerase I subunit RPA14
(17)
DNA-directed RNA polymerase I subunit RPA190
(17)
DNA-directed RNA polymerase I subunit RPA43
(17)
DNA-directed RNA polymerase I subunit RPA34
(14)
DNA-directed RNA polymerase I subunit RPA49
(14)
RNA
(12)
DNA (5'-D(*CP*TP*AP*CP*CP*GP*AP*TP*AP*AP*GP*CP*AP*GP*AP*CP*GP*AP*TP*CP*CP*TP*CP*TP*CP*GP*AP*TP*G)-3')
(9)
DNA (5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3')
(9)
Homeobox protein extradenticle
(9)
DNA (28-MER)
(8)
DNA-directed RNA polymerase subunit Rpo11
(7)
DNA-directed RNA polymerase subunit Rpo12
(7)
DNA-directed RNA polymerase subunit Rpo1C
(7)
DNA-directed RNA polymerase subunit Rpo1N
(7)
DNA-directed RNA polymerase subunit Rpo3
(7)
DNA-directed RNA polymerase subunit Rpo4
(7)
DNA-directed RNA polymerase subunit Rpo5
(7)
DNA-directed RNA polymerase subunit Rpo6
(7)
DNA-directed RNA polymerase subunit Rpo7
(7)
DNA-directed RNA polymerase subunit beta
(7)
DNA-directed RNA polymerase III subunit RPC1
(6)
DNA-directed RNA polymerase III subunit RPC10
(6)
DNA-directed RNA polymerase III subunit RPC2
(6)
DNA-directed RNA polymerase III subunit RPC3
(6)
DNA-directed RNA polymerase III subunit RPC4
(6)
DNA-directed RNA polymerase III subunit RPC5
(6)
DNA-directed RNA polymerase III subunit RPC6
(6)
DNA-directed RNA polymerase III subunit RPC7
(6)
DNA-directed RNA polymerase III subunit RPC8
(6)
DNA-directed RNA polymerase III subunit RPC9
(6)
DNA-directed RNA polymerase RBP11-like dimerisation domain-containing protein
(6)
DNA-directed RNA polymerase RpoA/D/Rpb3-type domain-containing protein
(6)
DNA-directed RNA polymerase subunit
(6)
DNA-directed RNA polymerase subunit Rpo2
(6)
RNA polymerase Rpb4/RPC9 core domain-containing protein
(6)
Template DNA
(6)
Transcription elongation factor SPT5
(6)
Transcription initiation factor IIB
(6)
28-MER DNA template strand
(5)
5'-D(*CP*TP*GP*CP*TP*TP*AP*TP*CP*GP*GP*TP*AP*G)-3'
(5)
5'-R(*AP*UP*CP*GP*AP*GP*AP*GP*GP*A)-3'
(5)
5'-R(*UP*UP*CP*GP*AP*CP*CP*AP*GP*GP*AP)-3'
(5)
DNA (5'-D(*TP*CP*TP*CP*TP*AP*AP*TP*GP*GP*CP*TP*TP*TP*C)-3')
(5)
DNA-directed RNA polymerase subunit Rpo13
(5)
DNA-directed RNA polymerase subunit Rpo8
(5)
Non-template DNA
(5)
TATA-box-binding protein
(5)
Transcription elongation factor SPT4
(5)
27-bp DNA Strand A
(4)
27-bp DNA Strand B
(4)
Alpha-amanitin
(4)
DNA template strand
(4)
Homeobox protein abdominal-B
(4)
Non-template strand
(4)
Template strand
(4)
5'-D(*AP*CP*TP*AP*CP*TP*TP*GP*AP*GP*CP*T)-3'
(3)
5'-D(*TP*AP*AP*GP*TP*AP*CP*TP*TP*GP *AP*GP*CP*T)-3'
(3)
CCAAT/enhancer-binding protein beta
(3)
DNA (29-MER)
(3)
DNA non-template strand
(3)
DNA(5'-(*CP*CP*AP*GP*TP*CP*CP*GP*TP*TP*AP* AP*GP*GP*AP*TP*TP*GP*CP*GP*CP*CP*AP*CP*AP*T)-3')
(3)
DNA(5'-(*GP*AP*TP*GP*TP*GP*GP*CP*GP*CP*AP* AP*TP*CP*CP*TP*TP*AP*AP*CP*GP*GP*AP*CP*TP*G)-3')
(3)
DNA-directed RNA polymerase II subunit E
(3)
DNA-directed RNA polymerase II subunit RPB11-a
(3)
General transcription factor IIE subunit 1
(3)
General transcription factor IIF subunit 1
(3)
General transcription factor IIF subunit 2
(3)
Homeotic protein ultrabithorax
(3)
Mating-type protein A1
(3)
Mating-type protein ALPHA2
(3)
REST corepressor 1
(3)
RNA (5'-R(*AP*UP*CP*AP*AP*GP*AP*GP*A)-3')
(3)
RNA polymerase I-specific transcription initiation factor RRN11
(3)
RNA polymerase I-specific transcription initiation factor RRN6
(3)
RNA polymerase I-specific transcription initiation factor RRN7
(3)
RNA polymerase II, I and III subunit K
(3)
RNA polymerase subunit ABC23, common to RNA polymerases I, II, and III
(3)
RNA product strand
(3)
SCP-X
(3)
SCP-Y
(3)
TEMPLATE DNA
(3)
Transcription elongation factor S-II
(3)
Transcription factor BYE1
(3)
Transcription initiation factor IIA subunit 1
(3)
More...
Interacting ligands
(178)
ZN : ZINC ION
(158)
SO4 : SULFATE ION
(65)
CL : CHLORIDE ION
(55)
MG : MAGNESIUM ION
(41)
GOL : GLYCEROL
(35)
EDO : 1,2-ETHANEDIOL
(14)
TDC : 5A,6-ANHYDROTETRACYCLINE
(11)
CA : CALCIUM ION
(8)
PG4 : TETRAETHYLENE GLYCOL
(6)
PO4 : PHOSPHATE ION
(6)
DEQ : DEQUALINIUM
(5)
ET : ETHIDIUM
(5)
MGR : MALACHITE GREEN
(5)
NA : SODIUM ION
(5)
TAC : TETRACYCLINE
(5)
NHE : 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID
(4)
NI : NICKEL (II) ION
(4)
PYR : PYRUVIC ACID
(4)
ACT : ACETATE ION
(3)
COA : COENZYME A
(3)
CTC : 7-CHLOROTETRACYCLINE
(3)
DCC : DODECYL-COA
(3)
FAD : FLAVIN-ADENINE DINUCLEOTIDE
(3)
IMD : IMIDAZOLE
(3)
ITC : ISO-7-CHLORTETRACYCLINE
(3)
MES : 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
(3)
MPD : (4S)-2-METHYL-2,4-PENTANEDIOL
(3)
RHQ : RHODAMINE 6G
(3)
TRS : 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
(3)
ACY : ACETIC ACID
(2)
BER : BERBERINE
(2)
BTI : 5-(HEXAHYDRO-2-OXO-1H-THIENO[3,4-D]IMIDAZOL-6-YL)PENTANAL
(2)
BTN : BIOTIN
(2)
CHD : CHOLIC ACID
(2)
CNS : HEXADECYL OCTANOATE
(2)
DXT : (4S,4AR,5S,5AR,6R,12AS)-4-(DIMETHYLAMINO)-3,5,10,12,12A-PENTAHYDROXY-6-METHYL-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-CARBOXAMIDE
(2)
F2N : [(2R,3S,4R,5R)-5-(6-AMINO-9H-PURIN-9-YL)-3,4-DIHYDROXYTETRAHYDROFURAN-2-YL]METHYL (2R,3S,4S)-5-[7,8-DIMETHYL-2,4-DIOXO-5-(3-PHENYLPROPANOYL)-1,3,4,5-TETRAHYDROBENZO[G]PTERIDIN-10(2H)-YL]-2,3,4-TRIHYDROXYPENTYL DIHYDROGEN DIPHOSPHATE
(2)
FAJ : FAD-trans-2-Phenylcyclopropylamine Adduct
(2)
FMT : FORMIC ACID
(2)
IVC : Isovaleryl-coenzyme A
(2)
K : POTASSIUM ION
(2)
MIY : (4S,4AS,5AR,12AS)-4,7-BIS(DIMETHYLAMINO)-3,10,12,12A-TETRAHYDROXY-1,11-DIOXO-1,4,4A,5,5A,6,11,12A-OCTAHYDROTETRACENE-2-
CARBOXAMIDE
(2)
MN : MANGANESE (II) ION
(2)
PAM : PALMITOLEIC ACID
(2)
PGE : TRIETHYLENE GLYCOL
(2)
PLM : PALMITIC ACID
(2)
PRL : PROFLAVIN
(2)
TCH : TAUROCHOLIC ACID
(2)
UNL : Unknown ligand
(2)
URA : URACIL
(2)
0MN : N-[4-(1,3-benzothiazol-2-yl)phenyl]-2-(3-methoxyphenoxy)acetamide
(1)
1PE : PENTAETHYLENE GLYCOL
(1)
2B2 : 4-(2-methyl-1,3-thiazol-4-yl)-N-(3,3,3-trifluoropropyl)benzamide
(1)
2B3 : 4-(2-{[(propylsulfonyl)amino]methyl}-1,3-thiazol-4-yl)-N-(3,3,3-trifluoropropyl)benzamide
(1)
2D1 : N-(3-methylbutyl)-4-(2-methyl-1,3-thiazol-4-yl)benzenesulfonamide
(1)
2G1 : 4-(2-methyl-1,3-thiazol-4-yl)-N-(3,3,3-trifluoropropyl)benzenesulfonamide
(1)
2H2 : 4-{3-[(phenylsulfonyl)amino]prop-1-yn-1-yl}-N-(3,3,3-trifluoropropyl)benzamide
(1)
2TC : (4S,4AS,6S,8AS)-6-[(1S)-7-CHLORO-4-HYDROXY-1-METHYL-3-OXO-1,3-DIHYDRO-2-BENZOFURAN-1-YL]-4-(DIMETHYLAMINO)-3,8A-DIHYDROXY-1,8-DIOXO-1,4,4A,5,6,7,8,8A-OCTAHYDRONAPHTHALENE-2-CARBONITRILE
(1)
3MO : 3-METHYL-1,3-OXAZOLIDIN-2-ONE
(1)
3PY : 3-HYDROXYPYRUVIC ACID
(1)
3SE : 4,4,4-trifluoro-1-{4-[3-(1,3-thiazol-2-yl)-1,2,4-oxadiazol-5-yl]piperidin-1-yl}butan-1-one
(1)
3SF : 5,5,5-trifluoro-1-{4-[3-(1,3-thiazol-2-yl)-1,2,4-oxadiazol-5-yl]piperidin-1-yl}pentan-1-one
(1)
4DM : (4aS,12aS)-3,10,11,12a-tetrahydroxy-6-methyl-1,12-dioxo-1,4,4a,5,12,12a-hexahydrotetracene-2-carboxamide
(1)
5T0 : 3-[1-[4-(methylaminomethyl)phenyl]piperidin-4-yl]-1-pyrrolidin-1-yl-propan-1-one
(1)
5T4 : ~{N}-[(1-pyrimidin-2-ylpiperidin-4-yl)methyl]pyrrolidine-1-carboxamide
(1)
5TB : 3-cyclopentyl-1-[3-[4-(methylaminomethyl)phenyl]-1,3-diazinan-1-yl]propan-1-one
(1)
5TC : 3-[1-(4-cyanophenyl)piperidin-4-yl]-~{N}-[(4-piperidin-1-ylphenyl)methyl]propanamide
(1)
5TD : 4-[4-(3-oxidanylidene-3-pyrrolidin-1-yl-propyl)piperidin-1-yl]benzenecarbonitrile
(1)
5TE : 3-cyclopentyl-~{N}-(3-piperidin-1-ylphenyl)propanamide
(1)
5TG : ~{tert}-butyl ~{N}-methyl-~{N}-[[4-[4-(3-oxidanylidene-3-pyrrolidin-1-yl-propyl)piperidin-1-yl]phenyl]methyl]carbamate
(1)
5TO : 3-cyclopentyl-1-pyrrolidin-1-yl-propan-1-one
(1)
5TT : ~{N}-methyl-1-(4-piperidin-1-ylphenyl)methanamine
(1)
6C4 : N-(cyclopentylmethyl)cyclopentanecarboxamide
(1)
6C5 : N-(cyclopentylmethyl)pyrrolidine-1-carboxamide
(1)
6C8 : (2E)-3-(furan-3-yl)-1-(pyrrolidin-1-yl)prop-2-en-1-one
(1)
6C9 : N-{[(3S)-oxolan-3-yl]methyl}pyrrolidine-1-carboxamide
(1)
6FG : 3-(furan-3-yl)-1-(pyrrolidin-1-yl)propan-1-one
(1)
6FR : 1-[(2-cyclopentylethyl)sulfonyl]pyrrolidine
(1)
70G : 3-[(1R)-8-methyl-1,2,3,4-tetrahydronaphthalen-1-yl]propanoic acid
(1)
70H : (3E)-4-(8-methylnaphthalen-1-yl)but-3-enoic acid
(1)
841 : ~{N}-[(1-pyridin-2-ylpiperidin-4-yl)methyl]pyrrolidine-1-carboxamide
(1)
8YE : [1-(2-hydroxyethyl)pyrrolo[3,4-c]pyrazol-5-yl]-(5-propyl-1,2-oxazol-3-yl)methanone
(1)
8YH : ~{N}-butyl-4-methyl-piperidine-1-carboxamide
(1)
8YT : 1-[3-[5-[(1~{R},2~{R})-2-methylcyclopropyl]furan-2-yl]propanoyl]piperidine-4-carboxamide
(1)
8YW : ~{N}-[(2~{R})-2-(4-nitrophenyl)-2-oxidanyl-ethyl]-1,3-benzodioxole-5-carboxamide
(1)
ADP : ADENOSINE-5'-DIPHOSPHATE
(1)
AGS : PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER
(1)
ATC : 9-(N,N-DIMETHYLGLYCYLAMIDO)-6-DEOXY-6-DEMETHYL-TETRACYCLINE
(1)
ATP : ADENOSINE-5'-TRIPHOSPHATE
(1)
BME : BETA-MERCAPTOETHANOL
(1)
BPV : Bromopyruvate
(1)
BRN : BERENIL
(1)
BTB : 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
(1)
BYT : Biocytin
(1)
CD : CADMIUM ION
(1)
CGQ : 3-[C-[N'-(3-CARBAMIMIDOYL-BENZYLIDENIUM)-HYDRAZINO]-[[AMINOMETHYLIDENE]AMINIUM]-IMINOMETHYL]-BENZAMIDINIUM
(1)
CIT : CITRIC ACID
(1)
CO : COBALT (II) ION
(1)
CVI : CRYSTAL VIOLET
(1)
DID : 4,4'[1,6-HEXANEDIYLBIS(OXY)]BISBENZENECARBOXIMIDAMIDE
(1)
More...
Function and Biology
EC number / name
(8)
2.7.7.6 : DNA-directed RNA polymerase
(48)
6.4.1.1 : Pyruvate carboxylase
(13)
1.14.99.66 : [Histone-H3]-N(6),N(6)-dimethyl-L-lysine(4) FAD-dependent demethylase
(9)
2.1.1.63 : Methylated-DNA--[protein]-cysteine S-methyltransferase
(3)
2.1.1.n11 : Methylphosphotriester-DNA--[protein]-cysteine S-methyltransferase
(3)
2.3.1.291 : Sphingoid base N-palmitoyltransferase
(2)
2.3.1.24 : Sphingosine N-acyltransferase
(1)
3.6.4.12 : DNA helicase
(1)
Biological function
(51)
DNA binding
(643)
DNA-binding transcription factor activity
(277)
protein binding
(232)
transcription cis-regulatory region binding
(206)
metal ion binding
(190)
zinc ion binding
(148)
DNA-directed RNA polymerase activity
(145)
obsolete RNA polymerase I activity
(142)
obsolete RNA polymerase II activity
(142)
obsolete RNA polymerase III activity
(142)
RNA-directed RNA polymerase activity
(125)
DNA-binding transcription factor activity, RNA polymerase II-specific
(109)
sequence-specific DNA binding
(61)
DNA-binding transcription activator activity
(35)
DNA-binding transcription repressor activity
(34)
core promoter sequence-specific DNA binding
(29)
protein homodimerization activity
(29)
sequence-specific DNA binding, bending
(29)
DNA strand exchange activity
(15)
catalytic activity
(13)
identical protein binding
(9)
5'-3' RNA polymerase activity
(8)
flavin adenine dinucleotide binding
(8)
nucleotidyltransferase activity
(8)
obsolete RNA polymerase IV activity
(8)
obsolete RNA polymerase V activity
(8)
obsolete plastid single subunit type RNA polymerase activity
(8)
oxidoreductase activity
(8)
telomeric DNA binding
(5)
ATP binding
(4)
nucleosome binding
(4)
sigma factor activity
(4)
bacterial-type RNA polymerase holo enzyme binding
(3)
ligase activity
(3)
methyltransferase activity
(3)
pyruvate carboxylase activity
(3)
carbohydrate transmembrane transporter activity
(2)
double-stranded telomeric DNA binding
(2)
maltose binding
(2)
sphingosine N-acyltransferase activity
(2)
transposase activity
(2)
ATP hydrolysis activity
(1)
Hsp70 protein binding
(1)
RNA polymerase II cis-regulatory region sequence-specific DNA binding
(1)
carbohydrate binding
(1)
carbohydrate derivative binding
(1)
histone deacetylase regulator activity
(1)
nucleic acid binding
(1)
ribosome binding
(1)
toxin activity
(1)
transcription factor binding
(1)
Biological process
(81)
regulation of DNA-templated transcription
(361)
negative regulation of DNA-templated transcription
(202)
DNA-templated transcription
(174)
transcription by RNA polymerase I
(142)
transcription by RNA polymerase II
(142)
transcription by RNA polymerase III
(137)
tRNA transcription by RNA polymerase III
(134)
transcription initiation at RNA polymerase II promoter
(129)
response to antibiotic
(127)
transcription elongation by RNA polymerase I
(126)
RNA-templated transcription
(125)
nucleolar large rRNA transcription by RNA polymerase I
(125)
ribosome biogenesis
(125)
termination of RNA polymerase I transcription
(125)
termination of RNA polymerase III transcription
(125)
transcription elongation by RNA polymerase II
(125)
transcription initiation at RNA polymerase I promoter
(125)
transcription initiation at RNA polymerase III promoter
(125)
positive regulation of DNA-templated transcription
(41)
chromosome organization
(29)
positive regulation of DNA recombination
(29)
provirus excision
(29)
response to radiation
(29)
DNA recombination
(15)
telomere maintenance
(9)
chromatin remodeling
(8)
plastid transcription
(8)
transcription by RNA polymerase IV
(8)
transcription by RNA polymerase V
(8)
DNA integration
(6)
regulation of transcription by RNA polymerase II
(6)
DNA repair
(5)
insulin secretion
(5)
liver development
(5)
pancreas development
(5)
protection from non-homologous end joining at telomere
(5)
fatty acid metabolic process
(3)
gluconeogenesis
(3)
lipid catabolic process
(3)
negative regulation of fatty acid metabolic process
(3)
pyruvate metabolic process
(3)
regulation of transcription by RNA polymerase I
(3)
small molecule metabolic process
(3)
DNA damage response
(2)
DNA transposition
(2)
DNA-templated transcription initiation
(2)
carbohydrate transmembrane transport
(2)
carbohydrate transport
(2)
cell chemotaxis
(2)
cell differentiation
(2)
ceramide biosynthetic process
(2)
detection of maltose stimulus
(2)
maltodextrin transmembrane transport
(2)
maltose transport
(2)
transmembrane transport
(2)
'de novo' cotranslational protein folding
(1)
apoptotic signaling pathway
(1)
chaperone-mediated protein complex assembly
(1)
chromatin organization
(1)
determination of dorsal/ventral asymmetry
(1)
flower development
(1)
forebrain development
(1)
heart development
(1)
lung alveolus development
(1)
meiotic attachment of telomere to nuclear envelope
(1)
modulation of process of another organism
(1)
negative regulation of cell differentiation
(1)
negative regulation of transcription by RNA polymerase II
(1)
neuron fate specification
(1)
phosphorelay signal transduction system
(1)
positive regulation of gap junction assembly
(1)
positive regulation of melanin biosynthetic process
(1)
positive regulation of protein secretion
(1)
positive regulation of skeletal muscle tissue regeneration
(1)
positive regulation of striated muscle cell differentiation
(1)
positive regulation of transcription by RNA polymerase II
(1)
regulation of heart contraction
(1)
regulation of translational fidelity
(1)
sporulation resulting in formation of a cellular spore
(1)
transposition
(1)
trophectodermal cell differentiation
(1)
Biological cell component
(24)
nucleus
(157)
DNA-directed RNA polymerase complex
(142)
RNA polymerase I complex
(134)
RNA polymerase II, core complex
(134)
RNA polymerase III complex
(134)
nucleolus
(131)
nucleoplasm
(130)
cytosol
(105)
cytoplasm
(46)
protein-DNA complex
(35)
invertasome
(29)
nucleoid
(29)
nucleosome
(29)
chromosome, telomeric region
(5)
membrane
(3)
ATP-binding cassette (ABC) transporter complex
(2)
ATP-binding cassette (ABC) transporter complex, substrate-binding subunit-containing
(2)
NuA4 histone acetyltransferase complex
(2)
maltose transport complex
(2)
outer membrane-bounded periplasmic space
(2)
periplasmic space
(2)
RNA polymerase II, holoenzyme
(1)
chromosome
(1)
host cell cytoplasm
(1)
Compound cofactor class
(1)
Biotin
(5)
Sequence and Structure classification
SCOP fold
(12)
DNA/RNA-binding 3-helical bundle
(273)
Tetracyclin repressor-like, C-terminal domain
(67)
lambda repressor-like DNA-binding domains
(9)
FAD-linked reductases, C-terminal domain
(8)
FAD/NAD(P)-binding domain
(8)
RNA polymerase
(5)
Resolvase-like
(4)
Periplasmic binding protein-like II
(2)
Another 3-helical bundle
(1)
Computational models partly based on experimental data
(1)
HAND domain of the nucleosome remodeling ATPase ISWI
(1)
Probable bacterial effector-binding domain
(1)
SCOP family
(32)
Homeodomain
(74)
Tetracyclin repressor-like, C-terminal domain
(67)
Tetracyclin repressor-like, N-terminal domain
(67)
Myb/SANT domain
(33)
RNA polymerase subunit RPB10
(28)
Recombinase DNA-binding domain
(20)
FIS-like
(15)
SWIRM domain
(13)
DNA-binding domain of telomeric protein
(8)
FAD-linked reductases, N-terminal domain
(8)
L-aminoacid/polyamine oxidase
(8)
POU-specific domain
(8)
RNA polymerase
(5)
Paired domain
(4)
gamma,delta resolvase, catalytic domain
(4)
Centromere-binding
(3)
AraC type transcriptional activator
(2)
Phosphate binding protein-like
(2)
Alr1493-like
(1)
CUT domain
(1)
Cgl2762-like
(1)
Computational models partly based on experimental data
(1)
DEK C-terminal domain
(1)
DNA-binding domain of rap1
(1)
GARP response regulators
(1)
HAND domain of the nucleosome remodeling ATPase ISWI
(1)
Middle operon regulator, Mor
(1)
Nanomeric phage protein-like
(1)
Psq domain
(1)
Rob transcription factor, C-terminal domain
(1)
RpiR-like
(1)
SLIDE domain
(1)
CATH class
(5)
Mainly Alpha
(767)
Alpha Beta
(30)
Mainly Beta
(10)
Special
(9)
Few Secondary Structures
(1)
CATH topology
(25)
Arc Repressor Mutant, subunit A
(746)
Tetracycline Repressor; domain 2
(241)
434 Repressor (Amino-terminal Domain)
(15)
Cyclin A; domain 1
(13)
Rossmann fold
(13)
TIM Barrel
(13)
pyruvate carboxylase f1077a mutant fold
(13)
Helix Hairpins
(11)
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(9)
Jelly Rolls
(4)
N-(1-d-carboxylethyl)-l-norvaline Dehydrogenase; domain 2
(4)
D-amino Acid Aminotransferase; Chain A, domain 1
(3)
DNA Methylphosphotriester Repair Domain
(3)
OB fold (Dihydrolipoamide Acetyltransferase, E2P)
(3)
Serum Albumin; Chain A, Domain 1
(3)
D-Maltodextrin-Binding Protein; domain 2
(2)
Methane Monooxygenase Hydroxylase; Chain G, domain 1
(2)
Helicase, Ruva Protein; domain 3
(1)
Hormone receptor fold
(1)
Immunoglobulin-like
(1)
Multidrug-efflux Transporter 1 Regulator Bmrr; Chain A
(1)
Nucleotidyltransferase; domain 5
(1)
SH3 type barrels.
(1)
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(1)
cAMP-dependent Protein Kinase, Chain A
(1)
Pfam accession / name
(101)
PF00440 : TetR_N
(237)
PF01194 : RNA_pol_N
(142)
PF00046 : Homeodomain
(136)
PF21313 : EthR_C
(73)
PF02909 : TetR_C_1
(62)
PF00249 : Myb_DNA-binding
(52)
PF02954 : HTH_8
(36)
PF08360 : TetR_C_5
(28)
PF05920 : Homeobox_KN
(22)
PF02796 : HTH_7
(15)
PF00682 : HMGL-like
(13)
PF02436 : PYC_OADA
(13)
PF04433 : SWIRM
(13)
PF00157 : Pou
(11)
PF00165 : HTH_AraC
(10)
PF12833 : HTH_18
(9)
PF21256 : TetR_C_5-like
(9)
PF01593 : Amino_oxidase
(8)
PF17932 : TetR_C_24
(8)
PF08359 : TetR_C_4
(6)
PF20901 : Sf6_terminase
(6)
PF00239 : Resolvase
(5)
PF00364 : Biotin_lipoyl
(5)
PF13921 : Myb_DNA-bind_6
(5)
PF17938 : TetR_C_29
(5)
PF00292 : PAX
(4)
PF04552 : Sigma54_DBD
(4)
PF08362 : TetR_C_3
(4)
PF09110 : HAND
(4)
PF16925 : TetR_C_13
(4)
PF22404 : ToxT_N
(4)
PF00289 : Biotin_carb_N
(3)
PF02316 : HTH_Tnp_Mu_1
(3)
PF02785 : Biotin_carb_C
(3)
PF02786 : CPSase_L_D2
(3)
PF02805 : Ada_Zn_binding
(3)
PF09039 : HTH_Tnp_Mu_2
(3)
PF09111 : SLIDE
(3)
PF09197 : Rap1-DNA-bind
(3)
PF13977 : TetR_C_6
(3)
PF16859 : TetR_C_11
(3)
PF18196 : Cdh1_DBD_1
(3)
PF21351 : TetR_C_41
(3)
PF21943 : TetR_C_46
(3)
PF01448 : ELM2
(2)
PF01547 : SBP_bac_1
(2)
PF02376 : CUT
(2)
PF03221 : HTH_Tnp_Tc5
(2)
PF04218 : CENP-B_N
(2)
PF04814 : HNF-1_N
(2)
PF05044 : HPD
(2)
PF11427 : HTH_Tnp_Tc3_1
(2)
PF13305 : TetR_C_33
(2)
PF13377 : Peripla_BP_3
(2)
PF13837 : Myb_DNA-bind_4
(2)
PF14246 : TetR_C_7
(2)
PF16282 : SANT_DAMP1_like
(2)
PF17754 : TetR_C_14
(2)
PF20878 : REST_helical
(2)
PF21227 : Myb_DNA-binding_7
(2)
PF21935 : TetR_C_45
(2)
PF22177 : PBP1_XylR
(2)
PF00072 : Response_reg
(1)
PF00158 : Sigma54_activat
(1)
PF00907 : T-box
(1)
PF01418 : HTH_6
(1)
PF01527 : HTH_Tnp_1
(1)
PF01978 : TrmB
(1)
PF02914 : DDE_2
(1)
PF04198 : Sugar-bind
(1)
PF04255 : DUF433
(1)
PF04545 : Sigma70_r4
(1)
PF04963 : Sigma54_CBD
(1)
PF05225 : HTH_psq
(1)
PF05431 : Toxin_10
(1)
PF06445 : GyrI-like
(1)
PF08765 : Mor
(1)
PF08766 : DEK_C
(1)
PF08914 : Myb_DNA-bind_2
(1)
PF09209 : CecR_C
(1)
PF09299 : Mu-transpos_C
(1)
PF09607 : BrkDBD
(1)
PF11569 : Homez
(1)
PF13022 : HTH_Tnp_1_2
(1)
PF13936 : HTH_38
(1)
PF14278 : TetR_C_8
(1)
PF16914 : TetR_C_12
(1)
PF17920 : TetR_C_16
(1)
PF17922 : TetR_C_17
(1)
PF17926 : TetR_C_21
(1)
PF17931 : TetR_C_23
(1)
PF17937 : TetR_C_28
(1)
PF17939 : TetR_C_30
(1)
PF18024 : HTH_50
(1)
PF18107 : HTH_ABP1_N
(1)
PF18375 : CDH1_2_SANT_HL1
(1)
PF21517 : HTH_Tnp_Tc3_2_like
(1)
PF21542 : TetR_C_42
(1)
PF21597 : TetR_C_43
(1)
PF21993 : TetR_C_13_2
(1)
More...
Experimental Information
Diffraction protocol
(2)
Single wavelength
(575)
MAD
(37)
Diffraction radiation source type
(4)
Synchrotron
(525)
Rotating anode
(54)
Free-electron laser
(1)
Sealed tube
(1)
Diffraction source
(103)
SLS BEAMLINE X06SA
(61)
APS BEAMLINE 19-ID
(45)
SSRL BEAMLINE BL11-1
(41)
APS BEAMLINE 24-ID-C
(17)
DIAMOND BEAMLINE I04
(17)
APS BEAMLINE 19-BM
(15)
ESRF BEAMLINE ID29
(13)
BESSY BEAMLINE 14.1
(12)
RIGAKU RU200
(12)
ALS BEAMLINE 4.2.2
(11)
ALS BEAMLINE 8.2.2
(11)
EMBL/DESY, HAMBURG BEAMLINE X13
(11)
ESRF BEAMLINE ID23-1
(11)
SLS BEAMLINE X06DA
(11)
NSLS BEAMLINE X25
(10)
ALS BEAMLINE 8.3.1
(9)
NSLS BEAMLINE X4A
(9)
RIGAKU MICROMAX-007
(9)
RIGAKU RU300
(9)
SSRL BEAMLINE BL9-2
(9)
ALS BEAMLINE 5.0.2
(8)
ALS BEAMLINE 8.2.1
(8)
DIAMOND BEAMLINE I03
(8)
APS BEAMLINE 23-ID-B
(7)
DIAMOND BEAMLINE I02
(7)
APS BEAMLINE 23-ID-D
(6)
APS BEAMLINE 24-ID-E
(6)
ESRF BEAMLINE BM14
(6)
ESRF BEAMLINE ID14-2
(6)
ESRF BEAMLINE ID14-4
(6)
NSLS BEAMLINE X12C
(6)
SPRING-8 BEAMLINE BL41XU
(6)
APS BEAMLINE 21-ID-F
(5)
APS BEAMLINE 21-ID-G
(5)
RIGAKU MICROMAX-007 HF
(5)
SOLEIL BEAMLINE PROXIMA 1
(5)
SSRL BEAMLINE BL12-2
(5)
SSRL BEAMLINE BL7-1
(5)
ALS BEAMLINE 5.0.1
(4)
APS BEAMLINE 22-BM
(4)
BESSY BEAMLINE 14.2
(4)
DIAMOND BEAMLINE I04-1
(4)
EMBL/DESY, HAMBURG BEAMLINE BW7A
(4)
ENRAF-NONIUS FR571
(4)
ENRAF-NONIUS FR591
(4)
ESRF BEAMLINE ID14-1
(4)
PHOTON FACTORY BEAMLINE AR-NW12A
(4)
PHOTON FACTORY BEAMLINE BL-6A
(4)
SPRING-8 BEAMLINE BL44B2
(4)
SSRF BEAMLINE BL17U1
(4)
APS BEAMLINE 17-ID
(3)
APS BEAMLINE 22-ID
(3)
CHESS BEAMLINE A1
(3)
CHESS BEAMLINE F1
(3)
DIAMOND BEAMLINE I24
(3)
EMBL/DESY, HAMBURG BEAMLINE X31
(3)
PHOTON FACTORY BEAMLINE BL-5A
(3)
RIGAKU
(3)
SPRING-8 BEAMLINE BL45XU
(3)
SSRL BEAMLINE BL14-1
(3)
APS BEAMLINE 14-BM-C
(2)
APS BEAMLINE 21-ID-D
(2)
EMBL/DESY, HAMBURG BEAMLINE BW7B
(2)
EMBL/DESY, HAMBURG BEAMLINE X12
(2)
ESRF BEAMLINE ID23-2
(2)
LURE BEAMLINE DW32
(2)
MAC SCIENCE M06XHF22
(2)
NSLS BEAMLINE X12B
(2)
NSLS BEAMLINE X29A
(2)
NSLS BEAMLINE X8C
(2)
NSRRC BEAMLINE BL13B1
(2)
PAL/PLS BEAMLINE 5C (4A)
(2)
PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
(2)
RIGAKU RUH3R
(2)
SLS BEAMLINE X10SA
(2)
SPRING-8 BEAMLINE BL26B2
(2)
SSRF BEAMLINE BL19U1
(2)
ALBA BEAMLINE XALOC
(1)
ALS BEAMLINE 5.0.3
(1)
APS BEAMLINE 14-BM-D
(1)
APS BEAMLINE 17-BM
(1)
APS BEAMLINE 32-ID
(1)
APS BEAMLINE 5ID-B
(1)
BRUKER D8 QUEST
(1)
CHESS BEAMLINE F2
(1)
CLSI BEAMLINE 08ID-1
(1)
NSLS BEAMLINE X3A
(1)
NSLS BEAMLINE X6A
(1)
NSLS BEAMLINE X9A
(1)
NSRRC BEAMLINE BL13C1
(1)
PAL/PLS BEAMLINE 4A
(1)
PAL/PLS BEAMLINE 7A (6B, 6C1)
(1)
PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
(1)
PHOTON FACTORY BEAMLINE AR-NE3A
(1)
RIGAKU FR-E+ DW
(1)
RIGAKU FR-E+ SUPERBRIGHT
(1)
SLAC LCLS BEAMLINE CXI
(1)
SPRING-8 BEAMLINE BL44XU
(1)
SRS BEAMLINE PX14.2
(1)
SRS BEAMLINE PX9.5
(1)
More...
Synchrotron site
(22)
APS
(123)
SLS
(73)
SSRL
(64)
ALS
(51)
ESRF
(48)
Diamond
(39)
NSLS
(34)
EMBL/DESY, Hamburg
(22)
BESSY
(16)
SPring-8
(16)
Photon Factory
(12)
CHESS
(7)
SSRF
(7)
SOLEIL
(5)
PAL/PLS
(4)
NSRRC
(3)
PETRA III, EMBL c/o DESY
(3)
LURE
(2)
SRS
(2)
ALBA
(1)
CLSI
(1)
SLAC LCLS
(1)
Diffraction detector type
(5)
CCD
(367)
Pixel
(122)
Image plate
(73)
Area detector
(4)
CMOS
(1)
Refinement software
(9)
REFMAC
(277)
CNS
(129)
PHENIX
(128)
X-PLOR
(42)
BUSTER
(41)
BUSTER-TNT
(18)
AMBER
(12)
TNT
(3)
DYANA
(1)
EM microscope model
(2)
FEI TITAN KRIOS
(27)
FEI TECNAI ARCTICA
(2)
EM detector name
(3)
GATAN K2 SUMMIT (4k x 4k)
(24)
GATAN K2 QUANTUM (4k x 4k)
(3)
FEI FALCON II (4k x 4k)
(2)
NMR
NMR software packages
(58)
NMRPipe
(80)
CYANA
(66)
NMRView
(51)
KUJIRA
(44)
XwinNMR
(44)
CNS
(27)
X-PLOR
(20)
Sparky
(17)
VNMR
(13)
EMBOSS
(12)
ARIA
(9)
PRESTO
(9)
PSVS
(9)
XEASY
(9)
Amber
(8)
DYANA
(8)
TALOS
(8)
TopSpin
(7)
Xplor-NIH
(7)
AutoAssign
(6)
VnmrJ
(6)
CARA
(5)
HADDOCK
(5)
AutoStructure
(4)
DIANA
(4)
OPALp
(4)
TALOS+
(4)
ASDP
(3)
Felix
(3)
PROSA
(3)
UNIO
(3)
CSI
(2)
Discover
(2)
FMCGUI
(2)
Gifa
(2)
Insight II
(2)
MDDGUI
(2)
NMR REFINE
(2)
NMRViewJ
(2)
OPAL
(2)
PROCHECK / PROCHECK-NMR
(2)
PdbStat
(2)
UXNMR
(2)
3D-DART
(1)
ATNOS-CANDID
(1)
AURELIA
(1)
CcpNmr Analysis
(1)
DGII
(1)
DISMAN
(1)
Delta
(1)
FMC
(1)
MOLMOL
(1)
PINE Server
(1)
PIPP
(1)
PIPP/CAPP/STAPP
(1)
TENSOR
(1)
X-PLOR 3.851, ARIA
(1)
X-PLOR_NIH_with_HBDB
(1)
NMR Field Strength
300.0 - 400
(2)
400.0 - 500
(33)
500.0 - 600
(68)
600.0 - 700
(64)
700.0 - 800
(85)
800.0 - 900
(79)
900.0 - 1000
(7)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
...
Entries 1 to 10 of 771
Select all entries on this page
ANTENNAPEDIA HOMEODOMAIN-DNA COMPLEX
Fraenkel E, Pabo CO
Nat Struct Biol
(1998)
[PMID: 9699632 ]
Source organisms: Synthetic construct, Drosophila melanogaster
Assembly composition: DNA/protein complex
Assembly name:
Homeotic protein antennapedia and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-271024 (Preferred)
search this ID

Solution structure of the homeobox domain of the human paired box protein Pax-6
Ohnishi S, Kigawa T, Tochio N, Tomizawa T, Koshiba S, Inoue M, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Paired box protein Pax-6
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-150717 (Preferred)
search this ID

Crystal Structure of HoxA9 and Pbx1 homeodomains bound to DNA
Laronde-Leblanc NA, Wolberger C
Genes Dev
(2003)
[PMID: 12923056 ]
Assembly composition: DNA/protein complex
Assembly name:
Pre-B-cell leukemia transcription factor 1 and Homeobox protein Hox-A9 and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-114406 (Preferred)
search this ID
Solution structures of the HTH domain of human LCoR protein
Nameki N, Umehara T, Sato M, Koshiba S, Inoue M, Tanaka A, Kigawa T, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Ligand-dependent corepressor
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-188582 (Preferred)
search this ID

HOMEODOMAIN FROM RAT LIVER LFB1/HNF1 TRANSCRIPTION FACTOR, NMR, 20 STRUCTURES
Schott O, Billeter M, Leiting B, Wider G, Wuthrich K
J Mol Biol
(1997)
[PMID: 9126845 ]
Source organism: Rattus rattus
Assembly composition: protein only structure
Assembly name:
Hepatocyte nuclear factor 1-alpha
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-147283 (Preferred)
search this ID

Solution Structure of Mouse Hypothetical Gene (2610100B20Rik) Product Homologous to Myb DNA-binding Domain
Zhao C, Kigawa T, Tochio N, Koshiba S, Inoue M, Shirouzu M, Terada T, Yabuki T, Aoki M, Seki E, Matsuda T, Tanaka A, Osanai T, Arakawa T, Carninci P, Kawai J, Hayashizaki Y, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Mus musculus
Assembly composition: protein only structure
Assembly name:
GON-4-like protein
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-190082 (Preferred)
search this ID

Solution structure of ARR10-B belonging to the GARP family of plant Myb-related DNA binding motifs of the Arabidopsis response regulators
Yamazaki T, Katoh E, Hosoda K, Mizuno T
Plant Cell
(2002)
[PMID: 12215502 ]
Source organism: Arabidopsis thaliana
Assembly composition: protein only structure
Assembly name:
Two-component response regulator ARR10
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-129268 (Preferred)
search this ID

solution structure and DNA binding of the effector domain from the global regulator PrrA(RegA) from R. sphaeroides: Insights into DNA binding specificity
Laguri C, Phillips-Jones MK, Williamson MP
Nucleic Acids Res
(2003)
[PMID: 14627811 ]
Source organism: Cereibacter sphaeroides
Assembly composition: protein only structure
Assembly name:
Photosynthetic apparatus regulatory protein RegA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-176047 (Preferred)
search this ID

Solution Structure Of The DNA Complex Of Human Trf2
Nishimura Y, Hanaoka S
Protein Sci
(2005)
[PMID: 15608118 ]
Source organism: Homo sapiens
Assembly composition: DNA/protein complex
Assembly name:
Telomeric repeat-binding factor 2 and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-114721 (Preferred)
search this ID

Testing the Water-Mediated HIN Recombinase DNA Recognition by Systematic Mutations
Chiu TK, Sohn C, Johnson RC, Dickerson RE
EMBO J
(2002)
[PMID: 11847127 ]
Source organisms: Synthetic construct, Salmonella enterica subsp. enterica serovar Typhimurium str. LT2
Assembly composition: DNA/protein complex
Assembly name:
DNA-invertase hin and DNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-114016 (Preferred)
search this ID

...
Entries 1 to 10 of 771