All structure family : Influenza virus non-structural protein, effector domain
 
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Entry Information
Entry status  (1)
REL
(26)
 
Experimental methods  (2)
X-ray diffraction
(25)
Solution NMR
(1)
 
Authors  (85)
Russell RJ
(9)
Hale BG
(8)
Kerry PS
(8)
Randall RE
(8)
Garcia-Sastre A
(7)
García-Sastre A
(7)
Russell RJM
(7)
Taylor MA
(7)
Ayllon J
(6)
Hass C
(6)
Lewis A
(6)
Bornholdt ZA
(4)
Prasad BV
(4)
Robertus JD
(4)
Xia S
(4)
Chen S
(3)
Hilgenfeld R
(3)
Xiao YB
(3)
Bricogne G
(2)
Carrillo B
(2)
Choi JM
(2)
Krug RM
(2)
Montelione GT
(2)
Monzingo AF
(2)
Northeast Structural Genomics Consortium (NESG)
(2)
Prasad BVV
(2)
Rice AP
(2)
Sankaran B
(2)
Sharff AJ
(2)
Xiao R
(2)
Zhao L
(2)
Aramini J
(1)
Aramini JM
(1)
Arnold E
(1)
Barclay WS
(1)
Center for Structural Genomics of Infectious Diseases (CSGID)
(1)
Ciccosanti C
(1)
Cunningham K
(1)
Cusack S
(1)
Das K
(1)
Esparza M
(1)
Falahat SM
(1)
Fang Y
(1)
Fontoura BMA
(1)
Fremont DH
(1)
Gray A
(1)
Green TJ
(1)
Haubrich K
(1)
Hennig J
(1)
Jackson D
(1)
Janjua H
(1)
Jureka AS
(1)
Killip MJ
(1)
Kleinpeter AB
(1)
Koliopoulos MG
(1)
Kowalinski E
(1)
Kuo RL
(1)
Lee H
(1)
Lethier M
(1)
Long E
(1)
Ma L
(1)
Ma L-C
(1)
Ma LC
(1)
Marklund J
(1)
Martin SR
(1)
Munoz-Moreno R
(1)
Muñoz-Moreno R
(1)
Nelson CA
(1)
Petit CM
(1)
Ponnusamy R
(1)
Precious BL
(1)
Radvansky B
(1)
Reis E Sousa C
(1)
Reis e Sousa C
(1)
Ren Y
(1)
Rittinger K
(1)
Sankaran S
(1)
Stevens RV
(1)
Twu KY
(1)
Wang J
(1)
Xie Y
(1)
Yu YYL
(1)
Zhang K
(1)
Zhang L
(1)
van der Veen AG
(1)
 
Homo / hetero assembly  (2)
homo
(22)
hetero
(4)
 
Assembly composition  (2)
protein structure
(22)
protein/protein complex
(4)
 
Assembly polymer count  (5)
dimer
(14)
monomer
(9)
octamer
(1)
tetramer
(1)
trimer
(1)
 
Resolution distribution
1.5 - 2
(6)
2.0 - 2.5
(9)
2.5 - 3
(6)
3.0 - 3.5
(3)
3.5 - 4
(1)
 
Release year distribution
2005 - 2010
(11)
2010 - 2015
(16)
2015 - 2020
(3)
 
Journal  (13)
PLoS One
(6)
To be published
(5)
Acta Crystallogr D Biol Crystallogr
(2)
Arch Biochem Biophys
(2)
J Virol
(2)
Proc Natl Acad Sci U S A
(2)
Acta Crystallogr Sect F Struct Biol Cryst Commun
(1)
J Biol Chem
(1)
Nat Commun
(1)
Nat Microbiol
(1)
Nat Struct Mol Biol
(1)
Nature
(1)
Virology
(1)
 
Macromolecules
Organism superkingdom  (1)
Viruses
(26)
 
Organism name  (11)
Influenza A virus (A/reassortant/IVR108(Sydney/5/1995 x Puerto Rico/8/1934)(H3N2))
(5)
Influenza A virus (A/Udorn/307/1972(H3N2))
(4)
Influenza A virus (A/Puerto Rico/8/1934(H1N1))
(3)
Influenza A virus (A/environment/Viet Nam/1203/2004(H5N1))
(3)
Influenza A virus
(2)
Influenza A virus (A/blue-winged teal/MN/993/1980(H6N6))
(2)
Influenza A virus (A/duck/Alberta/60/1976(H12N5))
(2)
unidentified influenza virus
(2)
Influenza A virus (A/Brevig Mission/1/1918(H1N1))
(1)
Influenza A virus (A/California/07/2009(H1N1))
(1)
Influenza A virus (A/Hungary/2/1971(H3N2))
(1)
 
Molecule name  (5)
NS1
(26)
Non-structural protein 1
(26)
NS1A
(17)
Nonstructural protein 1
(6)
NS1 protein
(1)
 
Molecule type  (1)
Protein
(26)
 
Gene names  (2)
NS
(26)
NS1
(8)
 
Interacting Molecules  (6)
Cleavage and polyadenylation specificity factor subunit 4
(1)
E3 ubiquitin/ISG15 ligase TRIM25
(1)
NTF2-related export protein 1
(1)
Non-structural protein 1
(1)
Nuclear RNA export factor 1
(1)
Phosphatidylinositol 3-kinase regulatory subunit beta
(1)
 
Interacting ligands  (4)
SCN : THIOCYANATE ION
(2)
NO3 : NITRATE ION
(1)
P6G : HEXAETHYLENE GLYCOL
(1)
SO4 : SULFATE ION
(1)
 
Function and Biology
Biological function  (4)
RNA binding
(26)
protein serine/threonine kinase inhibitor activity
(3)
protein binding
(2)
identical protein binding
(1)
 
Biological process  (6)
symbiont-mediated suppression of host PKR/eIFalpha signaling
(3)
symbiont-mediated suppression of host cytoplasmic pattern recognition receptor signaling pathway via inhibition of RIG-I activity
(3)
symbiont-mediated suppression of host gene expression
(3)
symbiont-mediated suppression of host innate immune response
(3)
symbiont-mediated suppression of host mRNA processing
(3)
symbiont-mediated suppression of host type I interferon-mediated signaling pathway
(3)
 
Biological cell component  (2)
host cell cytoplasm
(3)
host cell nucleus
(3)
 
Sequence and Structure classification
SCOP fold  (1)
Ns1 effector domain-like
(1)
 
SCOP family  (1)
Ns1 effector domain-like
(1)
 
CATH class  (2)
Alpha Beta
(26)
Mainly Alpha
(3)
 
CATH topology  (2)
Nucleotidyltransferase; domain 5
(26)
Helix Hairpins
(3)
 
Pfam accession / name  (1)
PF00600 : Flu_NS1
(26)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(25)
 
Diffraction radiation source type  (2)
Synchrotron
(13)
Rotating anode
(12)
 
Diffraction source  (13)
RIGAKU
(6)
RIGAKU MICROMAX-007 HF
(4)
ALS BEAMLINE 5.0.1
(2)
APS BEAMLINE 19-ID
(2)
BESSY BEAMLINE 14.1
(2)
RIGAKU MICROMAX-007
(2)
ALS BEAMLINE 4.2.2
(1)
APS BEAMLINE 21-ID-F
(1)
APS BEAMLINE 22-ID
(1)
BESSY BEAMLINE 14.2
(1)
DIAMOND BEAMLINE I03
(1)
DIAMOND BEAMLINE I04
(1)
NSLS BEAMLINE X25
(1)
 
Synchrotron site  (5)
APS
(4)
ALS
(3)
BESSY
(3)
Diamond
(2)
NSLS
(1)
 
Diffraction detector type  (3)
CCD
(14)
Image plate
(4)
Pixel
(1)
 
Refinement software  (5)
PHENIX
(12)
REFMAC
(10)
BUSTER
(2)
BUSTER-TNT
(2)
CNS
(1)
 
NMR
NMR software packages  (11)
AutoAssign
(1)
AutoStructure
(1)
CNS
(1)
CYANA
(1)
MolProbity
(1)
NMRPipe
(1)
PSVS
(1)
PdbStat
(1)
Sparky
(1)
TALOS
(1)
TopSpin
(1)
 
NMR Field Strength
500.0 - 600
(1)
600.0 - 700
(1)
700.0 - 800
(1)
800.0 - 900
(1)
 
Representative Structures
Representative Structures
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Entries 1 to 10 of 26
Entries 1 to 10 of 26
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Complex of influenza A NS1 effector domain with TRIM25 coiled coil
Koliopoulos MG, Rittinger K
Nat Commun (2018) [PMID: 29739942  ]
Assembly composition: protein/protein complex
Assembly name: Non-structural protein 1 and E3 ubiquitin/ISG15 ligase TRIM25 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-137078 (Preferred)   search this ID
PDBe-KB: P03496    Q14258   
X-ray diffraction
2.82Å resolution
Released: 16 May 2018
Model geometry
Fit model/data
5nt1
5nt1
5nt1
Crystal structure of the mRNA export receptor NXF1/NXT1 in complex with influenza virus NS1 protein
Xie Y, Ren Y
Nat Microbiol (2019) [PMID: 31263181  ]
Assembly composition: protein/protein complex
Assembly name: NXF1-NXT1 mRNA nuclear export factor complex and Non-structural protein 1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-125233 (Preferred)   search this ID
PDBe-KB: I7CAR2    Q9UBU9    Q9UKK6   
X-ray diffraction
3.8Å resolution
Released: 24 Apr 2019
Model geometry
Fit model/data
6e5u
6e5u
6e5u
Crystal Structure of the Non-Structural Protein 1 (NS1) effector domain W187A mutant from the A/Brevig Mission/1/1918 (H1N1) strain of Influenza A Virus
Kleinpeter AB, Green TJ, Petit CM
J Biol Chem (2018) [PMID: 30076219  ]
Assembly composition: protein only structure
Assembly name: Non-structural protein 1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-189304 (Preferred)   search this ID
PDBe-KB: Q99AU3   
X-ray diffraction
1.9Å resolution
Released: 15 Aug 2018
Model geometry
Fit model/data
6dgk
6dgk
6dgk
Structure of NS1 effector domain
Xia S, Monzingo AF, Robertus JD
Acta Crystallogr D Biol Crystallogr (2009) [PMID: 19153461  ]
Assembly composition: protein only structure
Assembly name: Non-structural protein 1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-137072 (Preferred)   search this ID
PDBe-KB: P03495   
X-ray diffraction
2.6Å resolution
Released: 13 Jan 2009
Model geometry
Fit model/data
3ee8
3ee8
3ee8
Effector domain of NS1 from influenza A/PR/8/34 containing a W187A mutation
Kerry PS, Long E, Taylor MA, Russell RJM
Acta Crystallogr Sect F Struct Biol Cryst Commun (2011) [PMID: 21821881  ]
Assembly composition: protein only structure
Assembly name: Non-structural protein 1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-137075 (Preferred)   search this ID
PDBe-KB: P03496   
X-ray diffraction
1.8Å resolution
Released: 24 Aug 2011
Model geometry
Fit model/data
3rvc
3rvc
3rvc
Structure of NS1 effector domain
Xia S, Monzingo AF, Robertus JD
Acta Crystallogr D Biol Crystallogr (2009) [PMID: 19153461  ]
Assembly composition: protein only structure
Bound ligands: SO4   
Assembly name: Non-structural protein 1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-137072 (Preferred)   search this ID
PDBe-KB: P03495   
X-ray diffraction
2.14Å resolution
Released: 13 Jan 2009
Model geometry
Fit model/data
3ee9
3ee9
3ee9
Effector domain from influenza A/PR/8/34 NS1
Kerry PS, Lewis A, Hale BG, Hass C, Taylor MA, Randall RE, Russell RJM
PLoS One (2011) [PMID: 21464929  ]
Assembly composition: protein only structure
Bound ligands: P6G    P6G   
Assembly name: Non-structural protein 1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-137077 (Preferred)   search this ID
PDBe-KB: P03496   
X-ray diffraction
2.2Å resolution
Released: 11 May 2011
Model geometry
Fit model/data
3o9t
3o9t
3o9t
Effector domain of influenza A/PR/8/34 NS1
Kerry PS, Lewis A, Hale BG, Hass C, Taylor MA, Randall RE, Russell RJM
PLoS One (2011) [PMID: 21464929  ]
Assembly composition: protein only structure
Assembly name: Non-structural protein 1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-137077 (Preferred)   search this ID
PDBe-KB: P03496   
X-ray diffraction
3.2Å resolution
Released: 11 May 2011
Model geometry
Fit model/data
3o9u
3o9u
3o9u
Effector domain of NS1 from A/PR/8/34 containing a W187A mutation
Kerry PS, Lewis A, Hale BG, Hass C, Taylor MA, Randall RE, Russell RJM
PLoS One (2011) [PMID: 21464929  ]
Assembly composition: protein only structure
Assembly name: Non-structural protein 1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-137075 (Preferred)   search this ID
PDBe-KB: P03496   
X-ray diffraction
2.5Å resolution
Released: 18 May 2011
Model geometry
Fit model/data
3o9q
3o9q
3o9q
Crystal structure of influenza A NS1A protein in complex with F2F3 fragment of human cellular factor CPSF30, Northeast Structural Genomics Targets OR8C and HR6309A
Das K, Ma L-C, Xiao R, Radvansky B, Aramini J, Zhao L, Arnold E, Krug RM, Montelione GT, Northeast Structural Genomics Consortium (NESG)
Proc Natl Acad Sci U S A (2008) [PMID: 18725644  ]
Assembly composition: protein/protein complex
Bound ligands: NO3    ZN    TRS    ZN    TRS   
Assembly name: Cleavage and polyadenylation specificity factor subunit 4 and Non-structural protein 1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-131968 (Preferred)   search this ID
PDBe-KB: P03495    O95639   
X-ray diffraction
1.95Å resolution
Released: 1 Jul 2008
Model geometry
Fit model/data
2rhk
2rhk
2rhk
Entries 1 to 10 of 26
Entries 1 to 10 of 26