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Entry Information
Entry status
(1)
Experimental methods
(1)
X-ray diffraction
(13)
Authors
(24)
Nelson N
(11)
Borovikova A
(7)
Toporik H
(6)
Amunts A
(5)
Mazor Y
(5)
Borovikov A
(3)
Caspy I
(2)
Nataf D
(2)
Brovikov A
(1)
Drory O
(1)
Fromme P
(1)
Greenberg I
(1)
Jordan P
(1)
Klaiman D
(1)
Klukas O
(1)
Krauss N
(1)
Kuang T
(1)
Malavath T
(1)
Netzer-El SY
(1)
Qin X
(1)
Saenger W
(1)
Shen JR
(1)
Suga M
(1)
Witt HT
(1)
Homo / hetero assembly
(1)
hetero
(13)
Assembly composition
(1)
protein/protein complex
(13)
Assembly polymer count
(7)
octadecamer
(4)
hexadecamer
(3)
heptadecamer
(2)
33-mer
(1)
36-mer
(1)
decamer
(1)
nonamer
(1)
Resolution distribution
2.0 - 2.5
(1)
2.5 - 3
(6)
3.0 - 3.5
(5)
3.5 - 4
(1)
Release year distribution
2000 - 2005
(1)
2005 - 2010
(5)
2010 - 2015
(6)
2015 - 2020
(5)
Journal
(7)
J Biol Chem
(4)
Elife
(3)
Nature
(2)
Biochim Biophys Acta Bioenerg
(1)
Nat Plants
(1)
Science
(1)
To be published
(1)
Macromolecules
Organism superkingdom
(2)
Eukaryota
(9)
Bacteria
(4)
Organism name
(4)
Pisum sativum
(5)
Spinacia oleracea
(4)
Synechocystis sp. PCC 6803
(3)
Synechococcus elongatus
(1)
Molecule name
(7)
Photosystem I reaction center subunit II, chloroplastic
(9)
PSI-D
(8)
Photosystem I 16 kDa polypeptide
(4)
Photosystem I 20 kDa subunit
(4)
Photosystem I reaction center subunit II
(4)
Uncharacterized protein
(4)
Photosystem I subunit PsaD
(1)
Molecule type
(1)
Protein
(13)
Gene names
(4)
psaD
(9)
slr0737
(3)
GLYMA_10G249000
(1)
tll1724
(1)
Interacting Molecules
(32)
Photosystem I P700 chlorophyll a apoprotein A1
(13)
Photosystem I P700 chlorophyll a apoprotein A2
(13)
Photosystem I iron-sulfur center
(13)
Photosystem I reaction center subunit IX
(13)
Photosystem I reaction center subunit VIII
(12)
Chlorophyll a-b binding protein P4, chloroplastic
(9)
Chlorophyll a-b binding protein, chloroplastic
(9)
Photosystem I reaction center subunit IV
(9)
Photosystem I reaction center subunit III
(7)
Photosystem I reaction center subunit V, chloroplastic
(7)
Photosystem I reaction center subunit III, chloroplastic
(6)
Photosystem I-N subunit
(6)
Chlorophyll a-b binding protein 3, chloroplastic
(5)
Chlorophyll a-b binding protein 6, chloroplastic
(5)
PSI subunit V
(5)
PSI-K
(5)
Photosystem I reaction center subunit VI
(5)
Photosystem I reaction center subunit IV A, chloroplastic
(4)
Photosystem I reaction center subunit VI, chloroplastic
(4)
Photosystem I reaction center subunit XI, chloroplastic
(4)
Photosystem I reaction center subunit XII
(4)
PHOTOSYSTEM I-N SUBUNIT
(3)
Photosystem I reaction center subunit PsaK 2
(3)
Photosystem I reaction center subunit XI
(3)
Photosystem I reaction center subunit psaK, chloroplastic
(3)
Photosystem I reaction center subunit V
(2)
CHAIN R
(1)
Photosystem I 4.8K protein
(1)
Photosystem I chlorophyll a/b-binding protein 3-1, chloroplastic
(1)
Photosystem I reaction center subunit II
(1)
Photosystem I reaction center subunit PsaK
(1)
Photosystem I reaction center subunit psaK, chloroplast
(1)
Interacting ligands
(1)
ACT : ACETATE ION
(1)
Function and Biology
EC number / name
(1)
1.97.1.12 : Photosystem I
(2)
Biological function
(1)
protein binding
(6)
Biological process
(1)
photosynthesis
(13)
Biological cell component
(7)
photosystem I
(13)
photosystem I reaction center
(13)
chloroplast thylakoid membrane
(7)
thylakoid
(7)
chloroplast
(3)
membrane
(3)
plasma membrane
(3)
Sequence and Structure classification
SCOP fold
(1)
Photosystem I subunit PsaD
(1)
SCOP family
(1)
Photosystem I subunit PsaD
(1)
CATH class
(1)
Alpha Beta
(13)
CATH topology
(1)
Photosystem 1 Reaction Centre Subunit Ii; Chain: D;
(13)
Pfam accession / name
(1)
PF02531 : PsaD
(13)
Experimental Information
Diffraction protocol
(1)
Single wavelength
(13)
Diffraction radiation source type
(1)
Synchrotron
(13)
Diffraction source
(6)
ESRF BEAMLINE ID23-2
(5)
SLS BEAMLINE X06DA
(3)
ESRF BEAMLINE ID29
(2)
ESRF BEAMLINE ID2
(1)
SLS BEAMLINE X06SA
(1)
SPRING-8 BEAMLINE BL41XU
(1)
Synchrotron site
(3)
ESRF
(8)
SLS
(4)
SPring-8
(1)
Diffraction detector type
(3)
CCD
(6)
Pixel
(5)
Image plate
(1)
Refinement software
(3)
PHENIX
(7)
REFMAC
(6)
CNS
(1)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
Entries 1 to 10 of 13
Select all entries on this page
Improved Model of Plant Photosystem I
Amunts A, Toporik H, Borovikov A, Nelson N
J Biol Chem
(2010)
[PMID: 19923216 ]
Source organisms: Arabidopsis thaliana , Pisum sativum , Spinacia oleracea , Glycine max , Phaseolus vulgaris , Hordeum vulgare
Assembly composition: protein/protein complex
Carbohydrate polymer components:
Molecule 1 -
FRU(1), GLC(1)
Assembly name:
Photosystem I
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-111633 (Preferred)
search this ID
The Structure of a plant photosystem I supercomplex at 3.4 Angstrom resolution
Amunts A, Drory O, Nelson N
Nature
(2007)
[PMID: 17476261 ]
Assembly composition: protein/protein complex
Assembly name:
Photosystem I
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-138625 (Preferred)
search this ID
Structure of synechocystis photosystem I trimer at 2.5A resolution
Nelson N, Malavath T, Caspy I
Biochim Biophys Acta Bioenerg
(2018)
[PMID: 29414678 ]
Source organism: Synechocystis sp. PCC 6803
Assembly composition: protein/protein complex
Bound ligands:
PQN
LMT
ZEX
ECH
ECH
MG
PQN
LHG
ACT
CA
EQ3
SQD
BCR
SQD
CA
45D
BCR
ZEX
CLA
CL
MG
EQ3
LMG
LMG
DGD
LHG
45D
DGD
LMT
ACT
Assembly name:
Photosystem I
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-146409 (Preferred)
search this ID
The structure of plant photosystem I super-complex at 2.6 angstrom resolution.
Mazor Y, Borovikova A, Caspy I, Nelson N
Nat Plants
(2017)
[PMID: 28248295 ]
Source organism: Pisum sativum
Assembly composition: protein/protein complex
Assembly name:
Photosystem I
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-101280 (Preferred)
search this ID
Crystal structure of a virus like photosystem I from the cyanobacterium Synechocystis PCC 6803
Mazor Y, Nataf D, Toporik H, Nelson N
Elife
(2013)
[PMID: 24473073 ]
Source organisms: Synechocystis sp. PCC 6803 , Bacillus subtilis BEST7613
Assembly composition: protein/protein complex
PDBe complex ID:
PDB-CPX-146410 (Preferred)
search this ID
Crystal structure of plant photosystem I-LHCI super-complex at 2.8 angstrom resolution
Suga M, Qin X, Kuang T, Shen JR
Science
(2015)
[PMID: 26023133 ]
Source organism: Pisum sativum
Assembly composition: protein/protein complex
Assembly name:
Photosystem I
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-107293 (Preferred)
search this ID
Improved Model of Plant Photosystem I
Amunts A, Toporik H, Borovikov A, Nelson N
J Biol Chem
(2010)
[PMID: 19923216 ]
Source organisms: Arabidopsis thaliana , Pisum sativum , Spinacia oleracea , Glycine max , Phaseolus vulgaris , Hordeum vulgare
Assembly composition: protein/protein complex
Carbohydrate polymer components:
Molecule 1 -
FRU(1), GLC(1)
Assembly name:
Photosystem I
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-111632 (Preferred)
search this ID
Improved model of plant photosystem I
Nelson N, Toporik H
J Biol Chem
(2010)
[PMID: 19923216 ]
Source organisms: Pisum sativum , unidentified
Assembly composition: protein/protein complex
Assembly name:
Photosystem I
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-122784 (Preferred)
search this ID
Crystal structure of plant Photosystem I at 3 Angstrom resolution
Mazor Y, Borovikova A, Greenberg I, Nelson N
To be published
Source organism: Pisum sativum
Assembly composition: protein/protein complex
Assembly name:
Photosystem I
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-101377 (Preferred)
search this ID
Crystal structure of a virus like photosystem I from the cyanobacterium Synechocystis PCC 6803
Mazor Y, Nataf D, Toporik H, Nelson N
Elife
(2013)
[PMID: 24473073 ]
Source organism: Synechocystis sp. PCC 6803
Assembly composition: protein/protein complex
Assembly name:
Photosystem I
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-146412 (Preferred)
search this ID
Entries 1 to 10 of 13