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Orville AM
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Pastor E
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Thermostichus vulcanus
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Thermosynechococcus vestitus BP-1
(9)
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Pisum sativum
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Spinacia oleracea
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Molecule name
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Cytochrome b559 subunit alpha
(28)
PSII reaction center subunit V
(28)
Molecule type
(1)
Protein
(28)
Gene names
(2)
psbE
(28)
tsr1541
(12)
Interacting Molecules
(38)
Cytochrome b559 subunit beta
(28)
Photosystem II CP43 reaction center protein
(28)
Photosystem II CP47 reaction center protein
(28)
Photosystem II D2 protein
(28)
Photosystem II reaction center protein H
(27)
Photosystem II reaction center protein I
(27)
Photosystem II reaction center protein J
(27)
Photosystem II reaction center protein K
(27)
Photosystem II reaction center protein L
(27)
Photosystem II reaction center protein T
(27)
Photosystem II reaction center protein Z
(27)
Photosystem II reaction center protein M
(26)
Photosystem II extrinsic protein V
(25)
Photosystem II extrinsic protein O
(24)
Photosystem II extrinsic protein U
(24)
Photosystem II reaction center protein X
(23)
Photosystem II reaction center protein Psb30
(22)
Photosystem II protein D1
(16)
Photosystem II reaction center protein Y
(14)
Photosystem II protein D1 1
(12)
Chlorophyll a-b binding protein, chloroplastic
(3)
Oxygen-evolving enhancer protein 1, chloroplastic
(3)
Chlorophyll a-b binding protein 8, chloroplastic
(2)
Oxygen-evolving enhancer protein 2, chloroplastic
(2)
PSII 6.1 kDa protein
(2)
Ultraviolet-B-repressible protein
(2)
Chlorophyll A-B Binding protein 26 kD (CP26)
(1)
Oxygen-evolving enhancer protein 3
(1)
Oxygen-evolving enhancer protein 3, chloroplastic
(1)
PHOTOSYSTEM II 12 KDA EXTRINSIC PROTEIN
(1)
PHOTOSYSTEM II MANGANESE-STABILIZING POLYPEPTIDE
(1)
Photosystem II PsbN protein
(1)
Photosystem II Reaction Center Tn protein
(1)
Photosystem II Reaction Center X protein
(1)
Photosystem II luminal extrinsic protein Tn, PsbTn
(1)
Photosystem II reaction center W protein, chloroplastic
(1)
UNASSIGNED SUBUNITS
(1)
Unassigned subunits
(1)
Interacting ligands
(14)
HEM : PROTOPORPHYRIN IX CONTAINING FE
(26)
LHG : 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE
(17)
LMT : DODECYL-BETA-D-MALTOSIDE
(12)
DGD : DIGALACTOSYL DIACYL GLYCEROL (DGDG)
(10)
UNL : Unknown ligand
(5)
DMS : DIMETHYL SULFOXIDE
(4)
GOL : GLYCEROL
(4)
1PE : PENTAETHYLENE GLYCOL
(1)
EDO : 1,2-ETHANEDIOL
(1)
HEC : HEME C
(1)
HTG : heptyl 1-thio-beta-D-glucopyranoside
(1)
P6G : HEXAETHYLENE GLYCOL
(1)
PG4 : TETRAETHYLENE GLYCOL
(1)
PGE : TRIETHYLENE GLYCOL
(1)
Function and Biology
EC number / name
(1)
1.10.3.9 : Photosystem II
(1)
Biological function
(4)
electron transfer activity
(28)
heme binding
(28)
iron ion binding
(28)
metal ion binding
(28)
Biological process
(3)
photosynthesis
(28)
photosynthesis, light reaction
(28)
photosynthetic electron transport chain
(28)
Biological cell component
(10)
membrane
(28)
photosystem II
(28)
photosystem II reaction center
(28)
thylakoid
(28)
cytoplasm
(25)
plasma membrane-derived thylakoid membrane
(25)
thylakoid membrane
(25)
chloroplast
(3)
chloroplast thylakoid membrane
(3)
plastid
(3)
Compound cofactor class
(1)
Heme
(1)
Sequence and Structure classification
SCOP fold
(2)
Photosystems
(1)
Single transmembrane helix
(1)
SCOP family
(2)
Cytochrome b559 subunits
(1)
Photosystems
(1)
CATH class
(1)
Mainly Alpha
(28)
CATH topology
(1)
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(28)
Pfam accession / name
(2)
PF00283 : Cytochrom_B559
(28)
PF00284 : Cytochrom_B559a
(28)
Experimental Information
Diffraction protocol
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Single wavelength
(25)
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Synchrotron
(15)
Free-electron laser
(10)
Diffraction source
(12)
SACLA BEAMLINE BL3
(6)
SPRING-8 BEAMLINE BL44XU
(4)
SLAC LCLS BEAMLINE CXI
(3)
SPRING-8 BEAMLINE BL41XU
(3)
ESRF BEAMLINE ID14-2
(2)
SPRING-8 BEAMLINE BL38B1
(2)
BESSY BEAMLINE 14.1
(1)
ESRF BEAMLINE ID29
(1)
OTHER
(1)
SLAC LCLS BEAMLINE MFX
(1)
SLAC LCLS BEAMLINE XPP
(1)
SLS BEAMLINE X06SA
(1)
Synchrotron site
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SPring-8
(9)
SACLA
(6)
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(4)
ESRF
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BESSY
(1)
PETRA III, DESY
(1)
SLS
(1)
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CCD
(19)
Pixel
(6)
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PHENIX
(14)
REFMAC
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CNS
(6)
EM microscope model
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FEI TITAN KRIOS
(3)
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GATAN K2 SUMMIT (4k x 4k)
(2)
OTHER
(1)
Representative Structures
Representative Structures
Entries
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Entries 1 to 10 of 28
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Room temperature XFEL structure of the native, doubly-illuminated photosystem II complex
Young ID, Ibrahim M, Chatterjee R, Gul S, Fuller F, Koroidov S, Brewster AS, Tran R, Alonso-Mori R, Kroll T, Michels-Clark T, Laksmono H, Sierra RG, Stan CA, Hussein R, Zhang M, Douthit L, Kubin M, de Lichtenberg C, Pham LV, Nilsson H, Cheah MH, Shevela D, Saracini C, Bean MA, Seuffert I, Sokaras D, Weng T-C, Pastor E, Weninger C, Fransson T, Lassalle L, Braeuer P, Aller P, Docker PT, Andi B, Orville AM, Glownia JM, Nelson S, Sikorski M, Zhu D, Hunter MS, Aquila A, Koglin JE, Robinson J, Liang M, Boutet S, Lyubimov AY, Uervirojnangkoorn M, Moriarty NW, Liebschner D, Afonine PV, Watermann DG, Evans G, Wernet P, Dobbek H, Weis WI, Brunger AT, Zwart PH, Adams PD, Zouni A, Messinger J, Bergmann U, Sauter NK, Kern J, Yachandra VK, Yano J
Nature
(2016)
[PMID: 27871088 ]
Source organism: Thermosynechococcus vestitus BP-1
Assembly composition: protein/protein complex
Assembly name:
Photosystem II
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-141186 (Preferred)
search this ID
Native XFEL structure of Photosystem II (preflash two-flash dataset
Suga M, Shen JR
Nature
(2017)
[PMID: 28219079 ]
Source organism: Thermostichus vulcanus
Assembly composition: protein/protein complex
Bound ligands:
HEM
LMT
CA
LHG
MG
BCR
GOL
PL9
SQD
BCT
CA
SQD
BCR
HEM
HTG
HTG
PL9
CL
CLA
HEC
MG
DGD
FE2
LHG
LMG
LMG
DGD
FE2
LMT
PHO
Assembly name:
Photosystem II
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-112066 (Preferred)
search this ID
Native XFEL structure of photosystem II (dark dataset)
Suga M, Shen JR
Nature
(2017)
[PMID: 28219079 ]
Source organism: Thermostichus vulcanus
Assembly composition: protein/protein complex
Bound ligands:
HEM
LMT
CA
LHG
MG
BCR
GOL
PL9
SQD
BCT
CA
SQD
BCR
HEM
HTG
HTG
PL9
CL
CLA
HEC
MG
DGD
FE2
LHG
LMG
LMG
DGD
FE2
LMT
PHO
Assembly name:
Photosystem II
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-112066 (Preferred)
search this ID
Native XFEL structure of photosystem II (preflash dark dataset)
Suga M, Shen JR
Nature
(2017)
[PMID: 28219079 ]
Source organism: Thermostichus vulcanus
Assembly composition: protein/protein complex
Bound ligands:
HEM
LMT
CA
LHG
MG
BCR
GOL
PL9
SQD
BCT
CA
SQD
BCR
HEM
HTG
HTG
PL9
CL
CLA
HEC
MG
DGD
FE2
LHG
LMG
LMG
DGD
FE2
LMT
PHO
Assembly name:
Photosystem II
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-112066 (Preferred)
search this ID
Photosystem II depleted of the Mn4CaO5 cluster at 2.55 A resolution
Zhang M, Bommer M, Chatterjee R, Hussain R, Kern J, Yano J, Dau H, Dobbek H, Zouni A
Elife
(2017)
[PMID: 28718766 ]
Source organism: Thermosynechococcus vestitus BP-1
Assembly composition: protein/protein complex
Assembly name:
Photosystem II
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-141173 (Preferred)
search this ID
Structure of unstacked C2S2M2-type PSII-LHCII supercomplex from Pisum sativum
Su XD, Ma J, Wei XP, Cao P, Zhu DJ, Chang WR, Liu ZF, Zhang XZ, Li M
Science
(2017)
[PMID: 28839073 ]
Source organism: Pisum sativum
Assembly composition: protein/protein complex
Bound ligands:
HEM
LUT
LHG
XAT
BCR
LUT
NEX
PL9
SQD
XAT
BCT
SQD
BCR
HEM
PL9
CLA
DGD
FE2
LHG
LMG
LMG
DGD
FE2
NEX
PHO
PDBe complex ID:
PDB-CPX-236764 (Preferred)
search this ID
Macromolecular diffractive imaging using imperfect crystals
Ayyer K, Yefanov O, Oberthur D, Roy-Chowdhury S, Galli L, Mariani V, Basu S, Coe J, Conrad CE, Fromme R, Schaffer A, Dorner K, James D, Kupitz C, Metz M, Nelson G, Xavier PL, Beyerlein KR, Schmidt M, Sarrou I, Spence JCH, Weierstall U, White TA, Yang J-H, Zhao Y, Liang M, Aquila A, Hunter MS, Koglin JE, Boutet S, Fromme P, Barty A, Chapman HN
Nature
(2016)
[PMID: 26863980 ]
Source organism: Thermosynechococcus vestitus BP-1
Assembly composition: protein/protein complex
Bound ligands:
HEM
CA
LHG
MG
BCR
PL9
SQD
BCT
CA
SQD
BCR
HEM
PL9
CL
CLA
MG
DGD
FE2
LHG
LMG
LMG
DGD
FE2
PHO
Assembly name:
Photosystem II
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-141187 (Preferred)
search this ID
Crystal structure analysis of Photosystem II complex
Tanaka A, Fukushima Y, Kamiya N
J Am Chem Soc
(2017)
[PMID: 28102667 ]
Source organism: Thermostichus vulcanus
Assembly composition: protein/protein complex
Bound ligands:
HEM
LMT
CA
LHG
MG
BCR
PL9
RRX
SQD
BCT
CA
DMS
SQD
BCR
DMS
HEM
HTG
HTG
PL9
CL
CLA
HEC
MG
DGD
FE2
LHG
LMG
LMG
DGD
FE2
LMT
PHO
RRX
Assembly name:
Photosystem II
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-112074 (Preferred)
search this ID
RE-REFINEMENT OF CRYSTAL STRUCTURE OF PHOTOSYSTEM II COMPLEX
Wang J, Wiwczar JM, Brudvig GW
Photosynth Res
(2017)
[PMID: 28741056 ]
Source organism: Thermostichus vulcanus
Assembly composition: protein/protein complex
Bound ligands:
2PE
HEM
LMT
P6G
CA
LHG
MG
P6G
PG4
BCR
GOL
PL9
SQD
BCT
CA
PE8
SQD
BCR
HEM
HTG
HTG
PL9
1PE
CL
CLA
HEC
MG
PG4
1PE
DGD
EDO
FE2
LHG
LMG
LMG
2PE
DGD
FE2
LMT
PE8
PGE
PGE
PHO
Assembly name:
Photosystem II
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-112074 (Preferred)
search this ID
Crystal structure of the PsbM-deletion mutant of photosystem II
Uto S, Kawakami K, Umena Y, Iwai M, Ikeuchi M, Shen JR, Kamiya N
Faraday Discuss
(2017)
[PMID: 28272640 ]
Source organism: Thermosynechococcus vestitus BP-1
Assembly composition: protein/protein complex
Bound ligands:
HEM
LMT
CA
LHG
MG
BCR
PL9
RRX
SQD
BCT
CA
DMS
SQD
BCR
DMS
HEM
HTG
HTG
PL9
CL
CLA
HEC
MG
DGD
FE2
LHG
LMG
LMG
DGD
FE2
LMT
PHO
RRX
Assembly name:
Photosystem II
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-141175 (Preferred)
search this ID
Entries 1 to 10 of 28