All structure family : Phycocyanins
 
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revised
(1)
 
Entry Information
Entry status  (1)
REL
(70)
 
Experimental methods  (1)
X-ray diffraction
(70)
 
Authors  (254)
Adir N
(12)
Madamwar D
(8)
Fromme P
(7)
Marx A
(7)
Barber J
(6)
Curmi PM
(6)
Curmi PMG
(6)
Fromme R
(6)
Harrop SJ
(6)
Sonani RR
(6)
Wilk KE
(6)
Fischetti RF
(5)
Hiller RG
(5)
Murray JW
(5)
Nield J
(5)
Reuter W
(5)
Scholes GD
(5)
Barthelmess M
(4)
Basu S
(4)
Benson S
(4)
Bergtholdt J
(4)
Chang WR
(4)
Chapman HN
(4)
Cherezov V
(4)
David L
(4)
Dierksmeyer D
(4)
Gupta GD
(4)
Henning R
(4)
Kissick DJ
(4)
Kumar V
(4)
Liang DC
(4)
Lieske J
(4)
Manstein DJ
(4)
Meents A
(4)
Messerschmidt M
(4)
Oberthuer D
(4)
Ogata CM
(4)
Patel A
(4)
Reinke PYA
(4)
Roy-Chowdhury S
(4)
Sarrou I
(4)
Schaible S
(4)
Schmidt M
(4)
Srajer V
(4)
Taft MH
(4)
Tolstikova A
(4)
Weierstall U
(4)
Wiedorn MO
(4)
Zhang JP
(4)
Boutet S
(3)
Bunster M
(3)
Collini E
(3)
Ding WL
(3)
Dinshaw R
(3)
Ghosh PK
(3)
Green BR
(3)
Hoef-Emden K
(3)
Huber R
(3)
Ishchenko A
(3)
Jiang T
(3)
K Ghosh P
(3)
Krasselt A
(3)
Lerner N
(3)
Liu W
(3)
Martin-Garcia JM
(3)
Martinez-Oyanedel J
(3)
Mirkovic T
(3)
Mishra S
(3)
Oblinsky DG
(3)
Satyanarayana L
(3)
Scheer H
(3)
Spence JC
(3)
Suresh CG
(3)
Teng CY
(3)
White TA
(3)
Zhao KH
(3)
Allen JP
(2)
Andujar-Sanchez M
(2)
Bacarizo J
(2)
Barty A
(2)
Brune D
(2)
Camara-Artigas A
(2)
Chowdhury SR
(2)
Coe J
(2)
Cogdell RJ
(2)
Conrad CE
(2)
Contreras-Martel C
(2)
Cuadri C
(2)
Ding W-L
(2)
Dobrovetsky E
(2)
Doust AB
(2)
Figueroa M
(2)
Gartner W
(2)
Gärtner W
(2)
Hontani Y
(2)
Hoppner A
(2)
Höppner A
(2)
Ibanez MJ
(2)
Ibañez MJ
(2)
James D
(2)
 
More...
 
Homo / hetero assembly  (2)
hetero
(66)
homo
(4)
 
Assembly composition  (2)
protein/protein complex
(66)
protein structure
(4)
 
Assembly polymer count  (7)
dodecamer
(30)
hexamer
(21)
dimer
(10)
tetramer
(6)
heptamer
(1)
monomer
(1)
pentadecamer
(1)
 
Resolution distribution
0.5 - 1
(1)
1.0 - 1.5
(9)
1.5 - 2
(14)
2.0 - 2.5
(27)
2.5 - 3
(15)
3.0 - 3.5
(4)
 
Release year distribution
1990 - 1995
(1)
1995 - 2000
(7)
2000 - 2005
(11)
2005 - 2010
(19)
2010 - 2015
(24)
2015 - 2020
(19)
 
Journal  (20)
To be published
(11)
Biochim Biophys Acta
(10)
J Mol Biol
(9)
Proc Natl Acad Sci U S A
(7)
IUCrJ
(4)
Nat Commun
(4)
Photosynth Res
(4)
Acta Crystallogr D Biol Crystallogr
(3)
J Struct Biol
(3)
Biophys J
(2)
FEBS J
(2)
J Biol Chem
(2)
PLoS One
(2)
Acta Crystallogr Sect F Struct Biol Cryst Commun
(1)
Biochem Biophys Res Commun
(1)
Biochemistry
(1)
Biochim Biophys Acta Bioenerg
(1)
Biophys Chem
(1)
CNS Neurol Disord Drug Targets
(1)
J FOOD BIOCHEM.
(1)
 
Macromolecules
Organism superkingdom  (2)
Bacteria
(51)
Eukaryota
(19)
 
Organism name  (30)
Thermosynechococcus vestitus BP-1
(10)
Thermostichus vulcanus
(9)
Mastigocladus laminosus
(5)
Phormidium rubidum A09DM
(5)
Gloeobacter violaceus
(4)
Agarophyton chilense
(3)
Arthrospira platensis
(3)
Rhodomonas sp. CS24
(3)
Galdieria sulphuraria
(2)
Nostoc sp. PCC 7120 = FACHB-418
(2)
Polysiphonia urceolata
(2)
Porphyridium purpureum
(2)
Synechococcus elongatus PCC 7942 = FACHB-805
(2)
Synechocystis sp. PCC 6803 substr. Kazusa
(2)
Chroomonas sp.
(1)
Cyanidium caldarium
(1)
Griffithsia monilis
(1)
Hemiselmis andersenii
(1)
Hemiselmis virescens
(1)
Leptolyngbya sp.
(1)
Leptolyngbya sp. N62DM
(1)
Microchaete diplosiphon
(1)
Neopyropia yezoensis
(1)
Palmaria palmata
(1)
Phormidium
(1)
Phormidium sp.
(1)
Phormidium tenue
(1)
Pseudanabaena sp. lw0831
(1)
Spirulina sp.
(1)
Synechococcus elongatus
(1)
 
Molecule name  (42)
C-phycocyanin alpha subunit
(24)
C-phycocyanin beta subunit
(24)
Allophycocyanin alpha chain
(5)
Allophycocyanin beta chain
(5)
B-phycoerythrin beta chain
(5)
Phycocyanin alpha chain
(4)
Phycocyanin beta chain
(4)
Phycoerythrin Alpha subunit
(4)
Phycoerythrin Beta subunit
(4)
Phycoerythrin beta subunit
(4)
Phycoerythrocyanin alpha chain
(4)
Allophycocyanin alpha subunit
(3)
Allophycocyanin beta subunit
(3)
C-phycocyanin alpha chain
(3)
C-phycocyanin beta chain
(3)
Phycoerythrocyanin beta chain
(3)
R-phycoerythrin alpha chain
(3)
R-phycoerythrin beta chain
(3)
Anchor polypeptide
(2)
B-phycoerythrin alpha chain
(2)
PBS-anchor protein
(2)
Phycobiliprotein ApcE
(2)
Phycobilisome linker polypeptide
(2)
Allophycocyanin
(1)
Allophycocyanin subunit alpha-B
(1)
Allophycocyanin, beta subunit
(1)
C-PHYCOCYANIN
(1)
C-PHYCOCYANIN ALPHA CHAIN
(1)
C-PHYCOCYANIN BETA CHAIN
(1)
C-phycocyanin-1 alpha subunit
(1)
C-phycocyanin-1 beta subunit
(1)
C-phycoerythrin
(1)
Phycocyanin PC645 beta subunit
(1)
Phycocyanin alpha-1 subunit
(1)
Phycocyanin beta-1 subunit
(1)
Phycocyanin-Alpha subunit
(1)
Phycocyanin-Beta subunit
(1)
Phycoerythrin PE555 beta subunit
(1)
Phycoerythrin alpha chain
(1)
Phycoerythrin alpha subunit
(1)
R-phycocyanin alpha chain
(1)
R-phycocyanin beta chain
(1)
 
Molecule type  (1)
Protein
(70)
 
Gene names  (41)
cpcA
(23)
cpcB
(23)
cpeB
(13)
tlr1957
(11)
tlr1958
(11)
apcB
(9)
cpeA
(9)
apcA
(8)
pccA
(4)
rpeA
(4)
cpcA1
(3)
cpcB1
(3)
pccB
(3)
rpeB
(3)
alr0020
(2)
apcE
(2)
APA_1421
(1)
APA_1422
(1)
Gchil_028
(1)
Gchil_029
(1)
Grc000187
(1)
Grc000188
(1)
Synpcc7942_0326
(1)
Synpcc7942_0327
(1)
Synpcc7942_1047
(1)
Synpcc7942_1048
(1)
Synpcc7942_1052
(1)
Synpcc7942_1053
(1)
apcD
(1)
cpcA-1
(1)
cpcA2
(1)
cpcB-1
(1)
cpcB2
(1)
rpcA
(1)
rpcB
(1)
sll0928
(1)
sll1577
(1)
sll1578
(1)
slr1986
(1)
tll0956
(1)
tll0957
(1)
 
Interacting Molecules  (43)
C-phycocyanin alpha subunit
(24)
C-phycocyanin beta subunit
(24)
Allophycocyanin alpha chain
(5)
Allophycocyanin beta chain
(5)
Phycocyanin beta chain
(4)
Phycoerythrin Alpha subunit
(4)
Phycoerythrin Beta subunit
(4)
Allophycocyanin alpha subunit
(3)
Allophycocyanin beta subunit
(3)
C-phycocyanin alpha chain
(3)
C-phycocyanin beta chain
(3)
Phycocyanin alpha chain
(3)
Phycoerythrin alpha-2 chain, chloroplastic
(3)
Phycoerythrin alpha-3 chain, chloroplastic
(3)
Phycoerythrocyanin alpha chain
(3)
Phycoerythrocyanin beta chain
(3)
R-phycoerythrin alpha chain
(3)
R-phycoerythrin beta chain
(3)
B-phycoerythrin alpha chain
(2)
B-phycoerythrin beta chain
(2)
Phycoerythrin alpha-1 subunit
(2)
Phycoerythrin beta subunit
(2)
Allophycocyanin
(1)
Allophycocyanin subunit alpha-B
(1)
Allophycocyanin, beta subunit
(1)
C-PHYCOCYANIN
(1)
C-PHYCOCYANIN ALPHA CHAIN
(1)
C-PHYCOCYANIN BETA CHAIN
(1)
C-phycocyanin-1 alpha subunit
(1)
C-phycocyanin-1 beta subunit
(1)
PROTEIN (RHODOPHYTAN PHYCOERYTHRIN (GAMMA CHAIN))
(1)
Phycobilisome 7.8 kDa linker polypeptide, allophycocyanin-associated, core
(1)
Phycocyanin PC645 alpha-1 subunit
(1)
Phycocyanin PC645 alpha-2 subunit
(1)
Phycocyanin alpha-1 subunit
(1)
Phycocyanin-Alpha subunit
(1)
Phycocyanin-Beta subunit
(1)
Phycoerythrin alpha chain
(1)
Phycoerythrin alpha subunit
(1)
Phycoerythrin alpha-2 subunit
(1)
R-PHYCOERYTHRIN
(1)
R-phycocyanin alpha chain
(1)
R-phycocyanin beta chain
(1)
 
Interacting ligands  (21)
CYC : PHYCOCYANOBILIN
(55)
PEB : PHYCOERYTHROBILIN
(15)
BLA : BILIVERDINE IX ALPHA
(12)
DBV : 15,16-DIHYDROBILIVERDIN
(6)
CL : CHLORIDE ION
(5)
PUB : PHYCOUROBILIN
(5)
SO4 : SULFATE ION
(5)
MG : MAGNESIUM ION
(3)
NA : SODIUM ION
(3)
GOL : GLYCEROL
(2)
MPD : (4S)-2-METHYL-2,4-PENTANEDIOL
(2)
MRD : (4R)-2-METHYLPENTANE-2,4-DIOL
(2)
URE : UREA
(2)
BO4 : BORATE ION
(1)
FMT : FORMIC ACID
(1)
M1V : mesobiliverdin IX(alpha)
(1)
NO3 : NITRATE ION
(1)
P6G : HEXAETHYLENE GLYCOL
(1)
PEG : DI(HYDROXYETHYL)ETHER
(1)
PI : HYDROGENPHOSPHATE ION
(1)
PVN : PHYCOVIOLOBILIN
(1)
 
Function and Biology
Biological process  (1)
photosynthesis
(70)
 
Biological cell component  (6)
phycobilisome
(70)
membrane
(66)
thylakoid
(66)
plasma membrane-derived thylakoid membrane
(47)
chloroplast
(19)
chloroplast thylakoid membrane
(19)
 
Sequence and Structure classification
SCOP fold  (1)
Globin-like
(19)
 
SCOP family  (1)
Phycocyanin-like phycobilisome proteins
(19)
 
CATH class  (1)
Mainly Alpha
(70)
 
CATH topology  (1)
Globin-like
(70)
 
Pfam accession / name  (1)
PF00502 : Phycobilisome
(68)
 
Experimental Information
Diffraction protocol  (2)
Single wavelength
(61)
Laue
(5)
 
Diffraction radiation source type  (4)
Synchrotron
(51)
Rotating anode
(12)
Free-electron laser
(3)
Sealed tube
(1)
 
Diffraction source  (39)
APS BEAMLINE 14-ID-B
(5)
ESRF BEAMLINE ID23-1
(5)
RIGAKU RU200
(5)
ESRF BEAMLINE ID14-1
(4)
ENRAF-NONIUS FR591
(3)
ESRF BEAMLINE ID14-4
(3)
SLAC LCLS BEAMLINE CXI
(3)
SRS BEAMLINE PX10.1
(3)
ALS BEAMLINE 8.2.1
(2)
APS BEAMLINE 23-ID-D
(2)
BRUKER AXS MICROSTAR
(2)
EMBL/DESY, HAMBURG BEAMLINE X11
(2)
RRCAT INDUS-2 BEAMLINE PX-BL21
(2)
APS BEAMLINE 17-ID
(1)
APS BEAMLINE 19-ID
(1)
APS BEAMLINE 21-ID-G
(1)
AUSTRALIAN SYNCHROTRON BEAMLINE MX1
(1)
CHESS BEAMLINE A1
(1)
DIAMOND BEAMLINE I04
(1)
DIAMOND BEAMLINE I04-1
(1)
EMBL/DESY, HAMBURG BEAMLINE X13
(1)
ESRF BEAMLINE BM14
(1)
ESRF BEAMLINE ID29
(1)
MPG/DESY, HAMBURG BEAMLINE BW6
(1)
NSLS BEAMLINE X4A
(1)
NSLS BEAMLINE X8C
(1)
OTHER
(1)
PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
(1)
PHOTON FACTORY
(1)
PHOTON FACTORY BEAMLINE BL-17A
(1)
PHOTON FACTORY BEAMLINE BL-6B
(1)
RIGAKU RU300
(1)
RIGAKU RUH2R
(1)
SLS BEAMLINE X06SA
(1)
SOLEIL BEAMLINE PROXIMA 1
(1)
SRS BEAMLINE PX14.1
(1)
SSRF BEAMLINE BL17U
(1)
SSRL BEAMLINE BL9-1
(1)
SSRL BEAMLINE BL9-2
(1)
 
Synchrotron site  (18)
ESRF
(14)
APS
(10)
SRS
(4)
EMBL/DESY, Hamburg
(3)
Photon Factory
(3)
SLAC LCLS
(3)
ALS
(2)
Diamond
(2)
NSLS
(2)
RRCAT INDUS-2
(2)
SSRL
(2)
Australian Synchrotron
(1)
CHESS
(1)
MPG/DESY, HAMBURG
(1)
PETRA III, EMBL c/o DESY
(1)
SLS
(1)
SOLEIL
(1)
SSRF
(1)
 
Diffraction detector type  (5)
CCD
(36)
Image plate
(15)
Pixel
(9)
Area detector
(5)
Diffractometer
(2)
 
Refinement software  (6)
PHENIX
(21)
REFMAC
(20)
CNS
(18)
X-PLOR
(8)
SHELXL-97
(2)
EREF
(1)
 
Representative Structures
Representative Structures
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Entries 1 to 10 of 70
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Crystal structure of a rod form of c-phycocyanin from Themosynechococcus vulcanus at 1.5 angstroms
David L, Marx A, Adir N
J Mol Biol (2011) [PMID: 21035460  ]
Assembly composition: protein/protein complex
Bound ligands: CYC    CYC   
Modified residues: MEN    MEN   
Assembly name: C-phycocyanin beta subunit and C-phycocyanin alpha subunit (Preferred)   search this complex
PDBe complex ID: PDB-CPX-180757 (Preferred)   search this ID
PDBe-KB: Q71RW8    Q9AM02   
X-ray diffraction
1.5Å resolution
Released: 3 Nov 2010
Model geometry
Fit model/data
3o2c
3o2c
3o2c
Crystal structure of c-phycocyanin from Themosynechococcus vulcanus at 1.35 angstroms resolution
Marx A, David L, Adir N
J Mol Biol (2011) [PMID: 21035460  ]
Assembly composition: protein/protein complex
Bound ligands: CYC    CYC   
Modified residues: MEN    MEN   
Assembly name: C-phycocyanin beta subunit and C-phycocyanin alpha subunit (Preferred)   search this complex
PDBe complex ID: PDB-CPX-180757 (Preferred)   search this ID
PDBe-KB: Q9AM02    Q71RW8   
X-ray diffraction
1.35Å resolution
Released: 3 Nov 2010
Model geometry
Fit model/data
3o18
3o18
3o18
Crystal structure of C-phycocyanin from Phormidium, Lyngbya spp. (Marine) and Spirulina sp. (Fresh water) shows two different ways of energy transfer between two hexamers.
Satyanarayana L, Patel A, Mishra S, K Ghosh P, Suresh CG
To be published
Source organism: Leptolyngbya sp.  
Assembly composition: protein/protein complex
Bound ligands: CYC    BLA    CYC    BLA   
Assembly name: C-phycocyanin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-163249 (Preferred)   search this ID
X-ray diffraction
3Å resolution
Released: 13 May 2008
Model geometry
Fit model/data
2uun
2uun
2uun
The monoclinic structure of phycocyanin from Gloeobacter violaceus
Murray JW, Benson S, Barber J
To be published
Source organism: Gloeobacter violaceus  
Assembly composition: protein/protein complex
Bound ligands: CYC    CYC   
Assembly name: Phycocyanin beta chain and Phycocyanin alpha chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-181708 (Preferred)   search this ID
PDBe-KB: Q7M7F7    Q7M7C7   
X-ray diffraction
2.4Å resolution
Released: 25 Mar 2008
Model geometry
Fit model/data
2vml
2vml
2vml
The structure of phycocyanin from Gloeobacter violaceus
Murray JW, Benson S, Nield J, Barber J
To be published
Source organism: Gloeobacter violaceus  
Assembly composition: protein/protein complex
Bound ligands: CYC    CYC   
Assembly name: Phycocyanin beta chain and Phycocyanin alpha chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-181708 (Preferred)   search this ID
PDBe-KB: Q7M7F7    Q7M7C7   
X-ray diffraction
2.6Å resolution
Released: 25 Mar 2008
Model geometry
Fit model/data
2vjr
2vjr
2vjr
Allophycocyanin from Thermosynechococcus vulcanus
Adir N, Klartag M, McGregor A, David L
J Mol Biol (2008) [PMID: 18823993  ]
Assembly composition: protein/protein complex
Bound ligands: CYC    CYC   
Modified residues: MEN    MEN   
Assembly name: Allophycocyanin alpha subunit and Allophycocyanin beta subunit (Preferred)   search this complex
PDBe complex ID: PDB-CPX-109951 (Preferred)   search this ID
PDBe-KB: B3VNK2    B3VNK3   
X-ray diffraction
2.9Å resolution
Released: 11 Nov 2008
Model geometry
Fit model/data
3dbj
3dbj
3dbj
Crystal Structure of C-Phycocyanin from Galdieria sulphuraria
Fromme R
To be published
Source organism: Galdieria sulphuraria  
Assembly composition: protein/protein complex
Bound ligands: BLA    BLA   
Modified residues: MEN    MEN   
Assembly name: C-phycocyanin beta chain and C-phycocyanin alpha chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-132385 (Preferred)   search this ID
PDBe-KB: P00306    P00311   
X-ray diffraction
1.85Å resolution
Released: 24 Feb 2009
Model geometry
Fit model/data
3brp
3brp
3brp
The E-configuration of alfa-Phycoerythrocyanin
Schmidt M, Patel A, Zhao Y, Reuter W
Biochemistry (2007) [PMID: 17209552  ]
Assembly composition: protein only structure
Bound ligands: PVN   
Assembly name: Phycoerythrocyanin alpha chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-132387 (Preferred)   search this ID
PDBe-KB: P00309   
X-ray diffraction
2.25Å resolution
Released: 23 Jan 2007
Model geometry
Fit model/data
Data not deposited
2j96
2j96
2j96
Crystal structure of Phormidium Phycoerythrin at pH 8.5
Kumar V, Sharma M, Sonani RR, Gupta GD, Madamwar D
Photosynth Res (2016) [PMID: 27068646  ]
Assembly composition: protein/protein complex
Bound ligands: PEB    GOL    SO4   
Modified residues: MEN    MEN   
Assembly name: Phycoerythrin Beta subunit and Phycoerythrin Alpha subunit (Preferred)   search this complex
PDBe complex ID: PDB-CPX-101218 (Preferred)   search this ID
PDBe-KB: A0A0E3W010    A0A0E4G455   
X-ray diffraction
2.121Å resolution
Released: 29 Jun 2016
Model geometry
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5aqd
5aqd
5aqd
Low temperature structure of phycoerythrocyanin from Mastigocladus laminosus
Schmidt M, Krasselt A, Reuter W
Biochim Biophys Acta (2006) [PMID: 16377266  ]
Assembly composition: protein/protein complex
Bound ligands: CYC    BLA    CYC    BLA   
Assembly name: Phycoerythrocyanin beta chain and Phycoerythrocyanin alpha chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-132388 (Preferred)   search this ID
PDBe-KB: P00309    P00313   
X-ray diffraction
2.85Å resolution
Released: 25 Jan 2006
Model geometry
Fit model/data
Data not deposited
2c7l
2c7l
2c7l
...
Entries 1 to 10 of 70
Entries 1 to 10 of 70