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Gürel G
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Schroeder SJ
(16)
Hansen JL
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Strobel SA
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Huang KS
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Kitchen DE
(9)
Ban N
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Tu D
(7)
Ippolito JA
(6)
Nissen P
(6)
Hansen J
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Amunts A
(3)
Bai XC
(3)
Brown A
(3)
Kanyo ZF
(3)
Ramakrishnan V
(3)
Aibara S
(2)
Duffy EM
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Kimanius D
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Klein DJ
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Rathore S
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Rorbach J
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Simonovic M
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Simonović M
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Tirado-Rives J
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Wang D
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Aebersold R
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Bhattacharjee A
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Bieri P
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Brandi L
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Bukau B
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Chen S
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Chen Y
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Connell SR
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Deuerling E
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Duffy E
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Edwards PC
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Farmer J
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Franceschi FJ
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Freeborn B
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Fucini P
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Goldberg J
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Greber BJ
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Gualerzi CO
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Hanselmann R
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He CG
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Huber R
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Johnson G
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Kavran JM
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Leibundgut M
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Lou R
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Maier T
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Milon P
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Milón P
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Murshudov G
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Ochoa-Lizarralde B
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Orbin A
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Patzelt H
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Scheres SHW
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Seila AC
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Springer D
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Steitz T
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TU D
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Tran J
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Wahl MC
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Worbs M
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Wu Y
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Zhou J
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Homo / hetero assembly
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hetero
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homo
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RNA/protein complex
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protein structure
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31-mer
(34)
32-mer
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30-mer
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33-mer
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51-mer
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55-mer
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56-mer
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monomer
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Haloarcula marismortui
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Homo sapiens
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Deinococcus radiodurans
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Sus scrofa
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Thermotoga maritima
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Molecule name
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50S ribosomal protein L4
(67)
Large ribosomal subunit protein uL4
(67)
Hl6
(65)
Hmal4
(65)
39S ribosomal protein L4, mitochondrial
(3)
L4mt
(3)
Large ribosomal subunit protein uL4m
(3)
MRP-L4
(3)
MITORIBOSOMAL PROTEIN UL4M, MRPL4
(1)
TmaL4
(1)
Molecule type
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Protein
(71)
Gene names
(8)
rpl4
(65)
rrnAC1610
(65)
CDABP0091
(3)
CGI-28
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MRPL4
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rplD
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DR_0312
(1)
TM_1499
(1)
Interacting Molecules
(148)
5S ribosomal RNA
(66)
Large ribosomal subunit protein uL13
(66)
Large ribosomal subunit protein uL14
(66)
Large ribosomal subunit protein uL15
(66)
Large ribosomal subunit protein uL18
(66)
Large ribosomal subunit protein uL2
(66)
Large ribosomal subunit protein uL22
(66)
Large ribosomal subunit protein uL23
(66)
Large ribosomal subunit protein uL24
(66)
Large ribosomal subunit protein uL29
(66)
Large ribosomal subunit protein uL3
(66)
Large ribosomal subunit protein uL30
(66)
Large ribosomal subunit protein uL5
(66)
Large ribosomal subunit protein uL6
(66)
23S ribosomal RNA
(65)
Large ribosomal subunit protein eL18
(65)
Large ribosomal subunit protein eL19
(65)
Large ribosomal subunit protein eL21
(65)
Large ribosomal subunit protein eL24
(65)
Large ribosomal subunit protein eL31
(65)
Large ribosomal subunit protein eL32
(65)
Large ribosomal subunit protein eL37
(65)
Large ribosomal subunit protein eL39
(65)
Large ribosomal subunit protein eL42
(65)
Large ribosomal subunit protein eL8
(65)
Large ribosomal subunit protein uL10
(65)
Large ribosomal subunit protein eL15
(64)
Large ribosomal subunit protein eL43
(64)
Large ribosomal subunit protein uL16
(64)
Large ribosomal subunit protein uL11
(45)
Large ribosomal subunit protein bL17m
(4)
Large ribosomal subunit protein bL19m
(4)
Large ribosomal subunit protein bL21m
(4)
Large ribosomal subunit protein bL32m
(4)
Large ribosomal subunit protein bL34m
(4)
Large ribosomal subunit protein bL35m
(4)
Large ribosomal subunit protein bL9m
(4)
Large ribosomal subunit protein uL10m
(4)
Large ribosomal subunit protein uL11m
(4)
Large ribosomal subunit protein uL14m
(4)
Large ribosomal subunit protein uL16m
(4)
Large ribosomal subunit protein uL24m
(4)
Large ribosomal subunit protein uL29m
(4)
Large ribosomal subunit protein uL30m
(4)
16S ribosomal RNA
(3)
Large ribosomal subunit protein bL20m
(3)
Large ribosomal subunit protein bL27m
(3)
Large ribosomal subunit protein bL28m
(3)
Large ribosomal subunit protein bL33m
(3)
Large ribosomal subunit protein mL37
(3)
Large ribosomal subunit protein mL38
(3)
Large ribosomal subunit protein mL39
(3)
Large ribosomal subunit protein mL40
(3)
Large ribosomal subunit protein mL41
(3)
Large ribosomal subunit protein mL42
(3)
Large ribosomal subunit protein mL43
(3)
Large ribosomal subunit protein mL44
(3)
Large ribosomal subunit protein mL45
(3)
Large ribosomal subunit protein mL46
(3)
Large ribosomal subunit protein mL48
(3)
Large ribosomal subunit protein mL49
(3)
Large ribosomal subunit protein mL50
(3)
Large ribosomal subunit protein mL51
(3)
Large ribosomal subunit protein mL52
(3)
Large ribosomal subunit protein mL53
(3)
Large ribosomal subunit protein mL62
(3)
Large ribosomal subunit protein mL63
(3)
Large ribosomal subunit protein mL64
(3)
Large ribosomal subunit protein mL65
(3)
Large ribosomal subunit protein mL66
(3)
Large ribosomal subunit protein uL13m
(3)
Large ribosomal subunit protein uL15m
(3)
Large ribosomal subunit protein uL18m
(3)
Large ribosomal subunit protein uL22m
(3)
Large ribosomal subunit protein uL23m
(3)
Large ribosomal subunit protein uL2m
(3)
Large ribosomal subunit protein uL3m
(3)
5'-R(*CP*CP*(DA)*(PHE)*(ACA))-3'
(2)
5'-R(*CP*CP*AP*(PHE)*(ACA))-3'
(2)
5'-R(*CP*CP*AP*(PHE)*(ACA)*(BTN))-3'
(2)
Acyl carrier protein, mitochondrial
(2)
CCA
(2)
Large ribosomal subunit protein bL36m
(2)
Large ribosomal subunit protein mL54
(2)
Large ribosomal subunit protein mL55
(2)
Mitochondrial assembly of ribosomal large subunit protein 1
(2)
Mitochondrial ribosome and complex I assembly factor AltMIEF1
(2)
RNA (5'-R(*CP*CP*(8AN))-3')
(2)
Unknown protein or protein extension
(2)
mitochondrial tRNAVal
(2)
39S ribosomal protein L27, mitochondrial
(1)
5'-D(*(DC)P*(DC)P*(5AA)P*(2OP)P*(PO2)P*AP*C*C)-3')
(1)
5'-R(*(DC)P*(DC)P*(PPU)*(LOF)P*(PO2)P*AP*C*C)-3'
(1)
5'-R(*CP*(5AA)*(HFA))-3'
(1)
5'-R(*CP*CP*(5AA)P*(2OP)P*(PAE)P*AP*C*C)-3')
(1)
5'-R(*CP*CP*(5AA)P*(2OP)P*(PO2)P*(DA)P*C*C)-3')
(1)
5'-R(*CP*CP*(PPU))-3'
(1)
5'-R(*CP*CP*(PPU)*(LOF))-3'
(1)
5'-R(*CP*CP*(PPU)*(TSE)*(DA)*CP*C)-3'
(1)
5'-R(*CP*CP*(PPU)P*(PO2)P*(DA)P*C*C)-3')
(1)
More...
Interacting ligands
(5)
NA : SODIUM ION
(65)
MG : MAGNESIUM ION
(4)
SR : STRONTIUM ION
(3)
CIT : CITRIC ACID
(1)
SPR : SPIRAMYCIN I
(1)
Function and Biology
Biological function
(5)
structural constituent of ribosome
(71)
rRNA binding
(67)
RNA binding
(3)
protein binding
(3)
DNA binding
(1)
Biological process
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translation
(71)
mitochondrial translation
(3)
Biological cell component
(5)
ribosome
(71)
ribonucleoprotein complex
(70)
mitochondrial inner membrane
(3)
mitochondrial large ribosomal subunit
(3)
mitochondrion
(3)
Sequence and Structure classification
SCOP fold
(2)
Ribosomal protein L4
(42)
Ribosome and ribosomal fragments
(2)
SCOP family
(3)
Ribosomal protein L4
(42)
Large subunit
(1)
Ribosome complexes
(1)
CATH class
(1)
Alpha Beta
(71)
CATH topology
(1)
Ribosomal Protein L4; Chain: A;
(71)
Pfam accession / name
(1)
PF00573 : Ribosomal_L4
(70)
Experimental Information
Diffraction protocol
(1)
Single wavelength
(67)
Diffraction radiation source type
(1)
Synchrotron
(67)
Diffraction source
(9)
NSLS BEAMLINE X25
(25)
APS BEAMLINE 19-ID
(18)
NSLS BEAMLINE X29A
(16)
APS BEAMLINE 24-ID-C
(9)
ALS BEAMLINE 8.2.2
(2)
APS BEAMLINE 8-BM
(2)
ESRF BEAMLINE BM1A
(1)
MPG/DESY, HAMBURG BEAMLINE BW6
(1)
SLS BEAMLINE X06SA
(1)
Synchrotron site
(6)
NSLS
(41)
APS
(29)
ALS
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ESRF
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MPG/DESY, HAMBURG
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SLS
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Diffraction detector type
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CCD
(65)
Image plate
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Pixel
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Refinement software
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CNS
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CNX
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PHENIX
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REFMAC
(2)
EM microscope model
(1)
FEI TITAN KRIOS
(4)
EM detector name
(1)
FEI FALCON II (4k x 4k)
(4)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
...
Entries 1 to 10 of 71
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Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
Brown A, Rathore S, Kimanius D, Aibara S, Bai XC, Rorbach J, Amunts A, Ramakrishnan V
Nat Struct Mol Biol
(2017)
[PMID: 28892042 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-251706 (Preferred)
search this ID
Structure of a native assembly intermediate of the human mitochondrial ribosome with unfolded interfacial rRNA
Brown A, Rathore S, Kimanius D, Aibara S, Bai XC, Rorbach J, Amunts A, Ramakrishnan V
Nat Struct Mol Biol
(2017)
[PMID: 28892042 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-251705 (Preferred)
search this ID
Crystal structure of the 50S ribosomal subunit from Deinococcus radiodurans in complex with hygromycin A
Kaminishi T, Schedlbauer A, Ochoa-Lizarralde B, Connell SR, Fucini P
Nucleic Acids Res
(2015)
[PMID: 26464437 ]
Source organism: Deinococcus radiodurans
Assembly composition: RNA/protein complex
Assembly name:
Large ribosomal protein and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-155884 (Preferred)
search this ID
Structure of the large subunit of the mammalian mitoribosome, part 1 of 2
Greber BJ, Boehringer D, Leibundgut M, Bieri P, Leitner A, Schmitz N, Aebersold R, Ban N
Nature
(2014)
[PMID: 25271403 ]
Source organism: Sus scrofa
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-236647 (Preferred)
search this ID
Structure of the large ribosomal subunit from human mitochondria
Brown A, Amunts A, Bai XC, Sugimoto Y, Edwards PC, Murshudov G, Scheres SHW, Ramakrishnan V
Science
(2014)
[PMID: 25278503 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-251715 (Preferred)
search this ID
Co-crystal structure of Mycalamide A Bound to the Large Ribosomal Subunit
Gurel G, Blaha G, Steitz TA, Moore PB
Antimicrob Agents Chemother
(2009)
[PMID: 19738021 ]
Assembly composition: DNA/RNA hybrid/RNA/protein complex
Assembly name:
Large ribosomal protein and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-113128 (Preferred)
search this ID
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488C. Density for anisomycin is visible but not included in the model.
Blaha G, Gurel G
J Mol Biol
(2008)
[PMID: 18455733 ]
Source organism: Haloarcula marismortui
Assembly composition: RNA/protein complex
Assembly name:
Large ribosomal protein and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-145581 (Preferred)
search this ID
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation G2616A
Blaha G, Gurel G
J Mol Biol
(2008)
[PMID: 18455733 ]
Source organism: Haloarcula marismortui
Assembly composition: RNA/protein complex
Assembly name:
Large ribosomal protein and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-145584 (Preferred)
search this ID
Structure of Anisomycin resistant 50S Ribosomal Subunit: 23S rRNA mutation A2488U
Blaha G, Gurel G
J Mol Biol
(2008)
[PMID: 18455733 ]
Source organism: Haloarcula marismortui
Assembly composition: RNA/protein complex
Assembly name:
Large ribosomal protein and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-145580 (Preferred)
search this ID
The structure of CCA and CCA-Phe-Cap-Bio bound to the large ribosomal subunit of Haloarcula marismortui
Simonovic M, Steitz TA
RNA
(2008)
[PMID: 18818369 ]
Source organisms: synthetic construct , Haloarcula marismortui
Assembly composition: RNA/protein complex
Assembly name:
Large ribosomal protein and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-145586 (Preferred)
search this ID
...
Entries 1 to 10 of 71