All structure family : Ribosomal protein S8e, subdomain
 
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Entry Information
Entry status  (1)
REL
(14)
 
Experimental methods  (1)
Electron Microscopy
(14)
 
Authors  (81)
Beckmann R
(6)
Berninghausen O
(6)
Ameismeier M
(4)
Cheng J
(4)
Ramakrishnan V
(4)
Fernandez IS
(3)
Fernández IS
(3)
Hinnebusch AG
(3)
Hussain T
(3)
Llacer JL
(3)
Llácer JL
(3)
Lorsch JR
(3)
Savva CG
(3)
Ban N
(2)
Becker T
(2)
Boehringer D
(2)
Heuer A
(2)
Leibundgut M
(2)
Martin-Marcos P
(2)
Munoz A
(2)
Schmidt C
(2)
Aitken CE
(1)
Bohringer D
(1)
Burger J
(1)
Böhringer D
(1)
Bürger J
(1)
Collier M
(1)
Dabrowski M
(1)
Dever TE
(1)
Gao N
(1)
Gerhardy S
(1)
Gerovac M
(1)
Guo Q
(1)
Heuvel Jvd
(1)
Hilal T
(1)
Hildebrand PW
(1)
Hurt E
(1)
Ismer J
(1)
Ji Y
(1)
Klingauf-Nerurkar P
(1)
Koetter P
(1)
Kotter P
(1)
Kötter P
(1)
LI Z
(1)
Lai D
(1)
Lai DH
(1)
Leiundgut M
(1)
Li Z
(1)
Loerke J
(1)
Lun Z
(1)
Lun ZR
(1)
Marler L
(1)
Mielke T
(1)
Murray J
(1)
Panse VG
(1)
Pena C
(1)
Peña C
(1)
Preis A
(1)
Quade N
(1)
Scaiola A
(1)
Scheerer P
(1)
Schmidt A
(1)
Shaikh TR
(1)
Shin BS
(1)
Spahn CM
(1)
Spahn CMT
(1)
Sprink T
(1)
Suo X
(1)
Tampe R
(1)
Tampé R
(1)
Thakur A
(1)
Thomson E
(1)
Trowitzsch S
(1)
Van Den Heuvel J
(1)
Weisser M
(1)
Xie Y
(1)
Xie YT
(1)
Yamamoto H
(1)
Yamamoto K
(1)
Zheng L
(1)
van den Heuvel J
(1)
 
Homo / hetero assembly  (1)
hetero
(14)
 
Assembly composition  (1)
RNA/protein complex
(14)
 
Assembly polymer count  (9)
35-mer
(4)
36-mer
(2)
37-mer
(2)
32-mer
(1)
33-mer
(1)
34-mer
(1)
38-mer
(1)
42-mer
(1)
icosamer
(1)
 
Resolution distribution
3.0 - 3.5
(4)
3.5 - 4
(10)
 
Release year distribution
2010 - 2015
(5)
2015 - 2020
(12)
 
Journal  (8)
Nature
(4)
Cell
(2)
EMBO J
(2)
Elife
(2)
Cell Res
(1)
Mol Cell
(1)
Nat Commun
(1)
Nat Struct Mol Biol
(1)
 
Macromolecules
Organism superkingdom  (1)
Eukaryota
(14)
 
Organism name  (6)
Homo sapiens
(5)
Kluyveromyces lactis
(4)
Saccharomyces cerevisiae S288C
(2)
Oryctolagus cuniculus
(1)
Saccharomyces cerevisiae
(1)
Toxoplasma gondii
(1)
 
Molecule name  (10)
40S ribosomal protein S8
(11)
Small ribosomal subunit protein eS8
(6)
KLLA0E20461p
(4)
40S ribosomal protein S8-A
(3)
RP19
(3)
S14
(3)
Small ribosomal subunit protein eS8A
(3)
YS9
(3)
40S ribosomal protein S8, putative
(1)
Ribosomal protein RPS8
(1)
 
Molecule type  (1)
Protein
(14)
 
Gene names  (10)
OK/SW-cl.83
(6)
RPS8
(6)
KLLA0_E20461g
(4)
RPS14A
(3)
RPS8A
(3)
YBL06.05
(3)
YBL0613
(3)
YBL072C
(3)
BN1205_006420
(1)
TGVEG_245460
(1)
 
Interacting Molecules  (127)
Small ribosomal subunit protein uS5
(14)
Small ribosomal subunit protein eS1
(11)
Small ribosomal subunit protein uS2
(11)
18S Ribosomal RNA
(10)
Small ribosomal subunit protein eS21
(10)
Small ribosomal subunit protein eS28
(10)
Small ribosomal subunit protein eS6
(10)
Small ribosomal subunit protein uS11
(10)
Small ribosomal subunit protein uS8
(10)
Small ribosomal subunit protein uS9
(10)
Small ribosomal subunit protein uS15
(9)
Small ribosomal subunit protein uS14
(8)
Small ribosomal subunit protein uS19
(8)
Small ribosomal subunit protein uS7
(8)
Ubiquitin-ribosomal protein eS31 fusion protein
(8)
Small ribosomal subunit protein eS12
(7)
Small ribosomal subunit protein RACK1
(6)
Small ribosomal subunit protein eS17
(6)
Small ribosomal subunit protein eS19
(6)
Small ribosomal subunit protein eS24
(6)
Small ribosomal subunit protein eS25
(6)
Small ribosomal subunit protein eS27
(6)
Small ribosomal subunit protein eS30
(6)
Small ribosomal subunit protein eS7
(6)
Small ribosomal subunit protein uS12
(6)
Small ribosomal subunit protein uS13
(6)
Small ribosomal subunit protein uS17
(6)
Small ribosomal subunit protein uS4
(6)
40S ribosomal protein S12
(5)
40S ribosomal protein S24
(5)
40S ribosomal protein S25
(5)
40S ribosomal protein S26
(5)
40S ribosomal protein S3
(5)
40S ribosomal protein S30
(5)
40S ribosomal protein S7
(5)
Plectin/eS10 N-terminal domain-containing protein
(5)
Small ribosomal subunit protein eS4, X isoform
(5)
Small ribosomal subunit protein uS10
(5)
Small ribosomal subunit protein uS10 domain-containing protein
(5)
Small ribosomal subunit protein uS15 N-terminal domain-containing protein
(5)
Small ribosomal subunit protein uS17 N-terminal domain-containing protein
(5)
Small ribosomal subunit protein uS3
(5)
Small ribosomal subunit protein uS7 domain-containing protein
(5)
40S ribosomal protein S27
(4)
40S ribosomal protein S4
(4)
Asc1
(4)
KLLA0A07194p
(4)
KLLA0B01474p
(4)
KLLA0B01562p
(4)
KLLA0E23673p
(4)
Rps15
(4)
Small ribosomal subunit protein eS10
(4)
40S ribosomal protein S23
(3)
Eukaryotic translation initiation factor 1A
(3)
Eukaryotic translation initiation factor eIF-1
(3)
RNA-binding protein NOB1
(3)
RNA-binding protein PNO1
(3)
Serine/threonine-protein kinase RIO2
(3)
Small ribosomal subunit protein eS1A
(3)
Small ribosomal subunit protein eS21A
(3)
Small ribosomal subunit protein eS24A
(3)
Small ribosomal subunit protein eS26
(3)
Small ribosomal subunit protein eS27A
(3)
Small ribosomal subunit protein eS30A
(3)
Small ribosomal subunit protein eS32A
(3)
Small ribosomal subunit protein eS4A
(3)
Small ribosomal subunit protein eS6A
(3)
Small ribosomal subunit protein eS7A
(3)
Small ribosomal subunit protein uS11A
(3)
Small ribosomal subunit protein uS12A
(3)
Small ribosomal subunit protein uS17A
(3)
Small ribosomal subunit protein uS2A
(3)
Small ribosomal subunit protein uS4A
(3)
Small ribosomal subunit protein uS8A
(3)
pre-18S ribosomal RNA
(3)
Bystin
(2)
Essential nuclear protein 1
(2)
Pre-rRNA-processing protein PNO1
(2)
Pre-rRNA-processing protein TSR1 homolog
(2)
Protein LTV1 homolog
(2)
Ribosome biogenesis protein TSR1
(2)
Small ribosomal subunit protein eS17A
(2)
Small ribosomal subunit protein eS19A
(2)
Small ribosomal subunit protein eS25A
(2)
Small ribosomal subunit protein eS31
(2)
Small ribosomal subunit protein eS32
(2)
Small ribosomal subunit protein uS13A
(2)
Small ribosomal subunit protein uS9A
(2)
20S ribosomal RNA
(1)
40S ribosomal protein S15, putative
(1)
40S ribosomal protein S21
(1)
40S ribosomal protein S29, putative
(1)
40S ribosomal protein S6
(1)
60S ribosomal protein L41
(1)
Cricket paralysis virus IRES RNA
(1)
Eukaryotic translation initiation factor 2 subunit alpha
(1)
Eukaryotic translation initiation factor 2 subunit beta
(1)
Eukaryotic translation initiation factor 2 subunit gamma
(1)
HCV IRES
(1)
HCV-IRES
(1)
 
More...
 
Interacting ligands  (1)
MG : MAGNESIUM ION
(1)
 
Function and Biology
Biological function  (3)
structural constituent of ribosome
(14)
RNA binding
(6)
protein binding
(6)
 
Biological process  (4)
translation
(14)
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
(9)
cytoplasmic translation
(6)
ribosomal small subunit biogenesis
(6)
 
Biological cell component  (15)
ribonucleoprotein complex
(14)
ribosome
(14)
cytoplasm
(9)
cytosol
(9)
cytosolic small ribosomal subunit
(9)
cytosolic ribosome
(6)
endoplasmic reticulum
(6)
extracellular exosome
(6)
focal adhesion
(6)
membrane
(6)
nucleolus
(6)
nucleoplasm
(6)
nucleus
(6)
small-subunit processome
(6)
90S preribosome
(3)
 
Sequence and Structure classification
CATH class  (1)
Mainly Alpha
(14)
 
CATH topology  (1)
Phosducin; domain 2
(14)
 
Pfam accession / name  (1)
PF01201 : Ribosomal_S8e
(14)
 
Experimental Information
Refinement software  (2)
REFMAC
(5)
PHENIX
(2)
 
EM microscope model  (2)
FEI TITAN KRIOS
(12)
FEI POLARA 300
(2)
 
EM detector name  (3)
FEI FALCON II (4k x 4k)
(12)
FEI FALCON III (4k x 4k)
(1)
GATAN K2 SUMMIT (4k x 4k)
(1)
 
Representative Structures
Representative Structures
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Entries 1 to 10 of 14
Entries 1 to 10 of 14
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Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation
Heuer A, Gerovac M, Schmidt C, Trowitzsch S, Preis A, Koetter P, Berninghausen O, Becker T, Beckmann R, Tampe R
Nat Struct Mol Biol (2017) [PMID: 28368393  ]
Assembly composition: RNA/protein complex
Bound ligands: ANP    MG    ANP    MG   
PDBe complex ID: PDB-CPX-126860 (Preferred)   search this ID
PDBe-KB: P0CX39    P0CX47    P32905    P0C0V8    P0C0W1    P0CX33    (view 13 more)
Electron Microscopy
3.9Å resolution
Released: 12 Apr 2017
Model geometry
Fit model/data
Data not analysed
5ll6
5ll6
5ll6
CryoEM structure of 40S-eIF1-eIF1A preinitiation complex
Hussain T, Llacer JL, Fernandez IS, Savva CG, Ramakrishnan V
Cell (2014) [PMID: 25417110  ]
Assembly composition: RNA/protein complex
Bound ligands: MG    ZN    ZN    MG   
PDBe complex ID: PDB-CPX-123454 (Preferred)   search this ID
PDBe-KB: Q6CMG3    F2Z602    Q6CW78    Q6CX80    Q6CW21    P33285    (view 30 more)
Electron Microscopy
3.75Å resolution
Released: 5 Nov 2014
Model geometry
Fit model/data
Data not analysed
3j80
3j80
3j80
CryoEM structure of a partial yeast 48S preinitiation complex
Hussain T, Llacer JL, Fernandez IS, Savva CG, Ramakrishnan V
Cell (2014) [PMID: 25417110  ]
Assembly composition: RNA/protein complex
Bound ligands: MG    ZN    ZN    MG    MET    MET   
Assembly name: Eukaryotic translation initiation factor 2 complex and RNA (Preferred)   search this complex
PDBe complex ID: PDB-CPX-123453 (Preferred)   search this ID
PDBe-KB: Q6CMG3    F2Z602    Q6CW78    Q6CX80    Q6CW21    P33285    (view 33 more)
Electron Microscopy
4Å resolution
Released: 5 Nov 2014
Model geometry
Fit model/data
Data not analysed
3j81
3j81
3j81
CryoEM structure of 40S-eIF1A-eIF1 complex from yeast
Llacer JL, Hussain T, Ramakrishnan V
Mol Cell (2015) [PMID: 26212456  ]
Assembly composition: RNA/protein complex
Bound ligands: MG    ZN    ZN    MG   
PDBe complex ID: PDB-CPX-123455 (Preferred)   search this ID
PDBe-KB: Q6CMG3    F2Z602    Q6CW78    Q6CX80    Q6CW21    P33285    (view 30 more)
Electron Microscopy
3.46Å resolution
Released: 12 Aug 2015
Model geometry
Fit model/data
Data not analysed
3jam
3jam
3jam
Mammalian 40S HCV-IRES complex
Yamamoto H, Collier M, Loerke J, Ismer J, Schmidt A, Hilal T, Sprink T, Yamamoto K, Mielke T, Burger J, Shaikh TR, Dabrowski M, Hildebrand PW, Scheerer P, Spahn CMT
EMBO J (2015) [PMID: 26604301  ]
Assembly composition: RNA/protein complex
Bound ligands: MG    ZN    ZN    MG   
PDBe complex ID: PDB-CPX-140329 (Preferred)   search this ID
PDBe-KB: P62241    P62753    P62081    P60866    P62979    P46781    (view 27 more)
Electron Microscopy
3.9Å resolution
Released: 23 Dec 2015
Model geometry
Fit model/data
Data not analysed
5flx
5flx
5flx
Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
Murray J, Savva CG, Shin BS, Dever TE, Ramakrishnan V, Fernandez IS
Elife (2016) [PMID: 27159451  ]
Assembly composition: RNA/protein complex
Bound ligands: MG    ZN    ZN    MG   
PDBe complex ID: PDB-CPX-150925 (Preferred)   search this ID
PDBe-KB: Q6CMG3    Q6CW78    Q6CX80    Q6CW21    P33285    Q6CUH5    (view 27 more)
Electron Microscopy
3.8Å resolution
Released: 18 May 2016
Model geometry
Fit model/data
Data not analysed
5it9
5it9
5it9
Cryo-EM structure of a late human pre-40S ribosomal subunit - State B
Ameismeier M, Cheng J, Berninghausen O, Beckmann R
Nature (2018) [PMID: 29875412  ]
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
PDBe complex ID: PDB-CPX-140347 (Preferred)   search this ID
PDBe-KB: P62241    P62753    P62081    Q13895    P46781    Q9ULX3    (view 24 more)
Electron Microscopy
4Å resolution
Released: 6 Jun 2018
Model geometry
Fit model/data
Data not analysed
6g4s
6g4s
6g4s
Cryo-EM structure of a late human pre-40S ribosomal subunit - State C
Ameismeier M, Cheng J, Berninghausen O, Beckmann R
Nature (2018) [PMID: 29875412  ]
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
Bound ligands: ZN    ZN   
PDBe complex ID: PDB-CPX-140343 (Preferred)   search this ID
PDBe-KB: P62241    P62753    P62081    P62979    Q13895    P46781    (view 28 more)
Electron Microscopy
3.6Å resolution
Released: 6 Jun 2018
Model geometry
Fit model/data
Data not analysed
6g18
6g18
6g18
Cryo-EM structure of a late human pre-40S ribosomal subunit - State R
Ameismeier M, Cheng J, Berninghausen O, Beckmann R
Nature (2018) [PMID: 29875412  ]
Source organism: Homo sapiens  
Assembly composition: RNA/protein complex
Bound ligands: ZN    ZN   
PDBe complex ID: PDB-CPX-140341 (Preferred)   search this ID
PDBe-KB: P62241    P62753    P62081    P60866    P62979    P46781    (view 29 more)
Electron Microscopy
3.5Å resolution
Released: 6 Jun 2018
Model geometry
Fit model/data
Data not analysed
6g5i
6g5i
6g5i
Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit
Scaiola A, Pena C, Weisser M, Boehringer D, Leibundgut M, Klingauf-Nerurkar P, Gerhardy S, Panse VG, Ban N
EMBO J (2018) [PMID: 29459436  ]
Assembly composition: RNA/protein complex
Bound ligands: MG    ZN    ZN    MG   
PDBe complex ID: PDB-CPX-126846 (Preferred)   search this ID
PDBe-KB: P0CX39    P0CX47    Q99216    P32905    P48589    P07280    (view 29 more)
Electron Microscopy
3.4Å resolution
Released: 28 Feb 2018
Model geometry
Fit model/data
Data not analysed
6fai
6fai
6fai
Entries 1 to 10 of 14
Entries 1 to 10 of 14