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Entry Information
Entry status
(1)
Experimental methods
(1)
Electron Microscopy
(14)
Authors
(81)
Beckmann R
(6)
Berninghausen O
(6)
Ameismeier M
(4)
Cheng J
(4)
Ramakrishnan V
(4)
Fernandez IS
(3)
Fernández IS
(3)
Hinnebusch AG
(3)
Hussain T
(3)
Llacer JL
(3)
Llácer JL
(3)
Lorsch JR
(3)
Savva CG
(3)
Ban N
(2)
Becker T
(2)
Boehringer D
(2)
Heuer A
(2)
Leibundgut M
(2)
Martin-Marcos P
(2)
Munoz A
(2)
Schmidt C
(2)
Aitken CE
(1)
Bohringer D
(1)
Burger J
(1)
Böhringer D
(1)
Bürger J
(1)
Collier M
(1)
Dabrowski M
(1)
Dever TE
(1)
Gao N
(1)
Gerhardy S
(1)
Gerovac M
(1)
Guo Q
(1)
Heuvel Jvd
(1)
Hilal T
(1)
Hildebrand PW
(1)
Hurt E
(1)
Ismer J
(1)
Ji Y
(1)
Klingauf-Nerurkar P
(1)
Koetter P
(1)
Kotter P
(1)
Kötter P
(1)
LI Z
(1)
Lai D
(1)
Lai DH
(1)
Leiundgut M
(1)
Li Z
(1)
Loerke J
(1)
Lun Z
(1)
Lun ZR
(1)
Marler L
(1)
Mielke T
(1)
Murray J
(1)
Panse VG
(1)
Pena C
(1)
Peña C
(1)
Preis A
(1)
Quade N
(1)
Scaiola A
(1)
Scheerer P
(1)
Schmidt A
(1)
Shaikh TR
(1)
Shin BS
(1)
Spahn CM
(1)
Spahn CMT
(1)
Sprink T
(1)
Suo X
(1)
Tampe R
(1)
Tampé R
(1)
Thakur A
(1)
Thomson E
(1)
Trowitzsch S
(1)
Van Den Heuvel J
(1)
Weisser M
(1)
Xie Y
(1)
Xie YT
(1)
Yamamoto H
(1)
Yamamoto K
(1)
Zheng L
(1)
van den Heuvel J
(1)
Homo / hetero assembly
(1)
hetero
(14)
Assembly composition
(1)
RNA/protein complex
(14)
Assembly polymer count
(9)
35-mer
(4)
36-mer
(2)
37-mer
(2)
32-mer
(1)
33-mer
(1)
34-mer
(1)
38-mer
(1)
42-mer
(1)
icosamer
(1)
Resolution distribution
3.0 - 3.5
(4)
3.5 - 4
(10)
Release year distribution
2010 - 2015
(5)
2015 - 2020
(12)
Journal
(8)
Nature
(4)
Cell
(2)
EMBO J
(2)
Elife
(2)
Cell Res
(1)
Mol Cell
(1)
Nat Commun
(1)
Nat Struct Mol Biol
(1)
Macromolecules
Organism superkingdom
(1)
Eukaryota
(14)
Organism name
(6)
Homo sapiens
(5)
Kluyveromyces lactis
(4)
Saccharomyces cerevisiae S288C
(2)
Oryctolagus cuniculus
(1)
Saccharomyces cerevisiae
(1)
Toxoplasma gondii
(1)
Molecule name
(10)
40S ribosomal protein S8
(11)
Small ribosomal subunit protein eS8
(6)
KLLA0E20461p
(4)
40S ribosomal protein S8-A
(3)
RP19
(3)
S14
(3)
Small ribosomal subunit protein eS8A
(3)
YS9
(3)
40S ribosomal protein S8, putative
(1)
Ribosomal protein RPS8
(1)
Molecule type
(1)
Protein
(14)
Gene names
(10)
OK/SW-cl.83
(6)
RPS8
(6)
KLLA0_E20461g
(4)
RPS14A
(3)
RPS8A
(3)
YBL06.05
(3)
YBL0613
(3)
YBL072C
(3)
BN1205_006420
(1)
TGVEG_245460
(1)
Interacting Molecules
(127)
Small ribosomal subunit protein uS5
(14)
Small ribosomal subunit protein eS1
(11)
Small ribosomal subunit protein uS2
(11)
18S Ribosomal RNA
(10)
Small ribosomal subunit protein eS21
(10)
Small ribosomal subunit protein eS28
(10)
Small ribosomal subunit protein eS6
(10)
Small ribosomal subunit protein uS11
(10)
Small ribosomal subunit protein uS8
(10)
Small ribosomal subunit protein uS9
(10)
Small ribosomal subunit protein uS15
(9)
Small ribosomal subunit protein uS14
(8)
Small ribosomal subunit protein uS19
(8)
Small ribosomal subunit protein uS7
(8)
Ubiquitin-ribosomal protein eS31 fusion protein
(8)
Small ribosomal subunit protein eS12
(7)
Small ribosomal subunit protein RACK1
(6)
Small ribosomal subunit protein eS17
(6)
Small ribosomal subunit protein eS19
(6)
Small ribosomal subunit protein eS24
(6)
Small ribosomal subunit protein eS25
(6)
Small ribosomal subunit protein eS27
(6)
Small ribosomal subunit protein eS30
(6)
Small ribosomal subunit protein eS7
(6)
Small ribosomal subunit protein uS12
(6)
Small ribosomal subunit protein uS13
(6)
Small ribosomal subunit protein uS17
(6)
Small ribosomal subunit protein uS4
(6)
40S ribosomal protein S12
(5)
40S ribosomal protein S24
(5)
40S ribosomal protein S25
(5)
40S ribosomal protein S26
(5)
40S ribosomal protein S3
(5)
40S ribosomal protein S30
(5)
40S ribosomal protein S7
(5)
Plectin/eS10 N-terminal domain-containing protein
(5)
Small ribosomal subunit protein eS4, X isoform
(5)
Small ribosomal subunit protein uS10
(5)
Small ribosomal subunit protein uS10 domain-containing protein
(5)
Small ribosomal subunit protein uS15 N-terminal domain-containing protein
(5)
Small ribosomal subunit protein uS17 N-terminal domain-containing protein
(5)
Small ribosomal subunit protein uS3
(5)
Small ribosomal subunit protein uS7 domain-containing protein
(5)
40S ribosomal protein S27
(4)
40S ribosomal protein S4
(4)
Asc1
(4)
KLLA0A07194p
(4)
KLLA0B01474p
(4)
KLLA0B01562p
(4)
KLLA0E23673p
(4)
Rps15
(4)
Small ribosomal subunit protein eS10
(4)
40S ribosomal protein S23
(3)
Eukaryotic translation initiation factor 1A
(3)
Eukaryotic translation initiation factor eIF-1
(3)
RNA-binding protein NOB1
(3)
RNA-binding protein PNO1
(3)
Serine/threonine-protein kinase RIO2
(3)
Small ribosomal subunit protein eS1A
(3)
Small ribosomal subunit protein eS21A
(3)
Small ribosomal subunit protein eS24A
(3)
Small ribosomal subunit protein eS26
(3)
Small ribosomal subunit protein eS27A
(3)
Small ribosomal subunit protein eS30A
(3)
Small ribosomal subunit protein eS32A
(3)
Small ribosomal subunit protein eS4A
(3)
Small ribosomal subunit protein eS6A
(3)
Small ribosomal subunit protein eS7A
(3)
Small ribosomal subunit protein uS11A
(3)
Small ribosomal subunit protein uS12A
(3)
Small ribosomal subunit protein uS17A
(3)
Small ribosomal subunit protein uS2A
(3)
Small ribosomal subunit protein uS4A
(3)
Small ribosomal subunit protein uS8A
(3)
pre-18S ribosomal RNA
(3)
Bystin
(2)
Essential nuclear protein 1
(2)
Pre-rRNA-processing protein PNO1
(2)
Pre-rRNA-processing protein TSR1 homolog
(2)
Protein LTV1 homolog
(2)
Ribosome biogenesis protein TSR1
(2)
Small ribosomal subunit protein eS17A
(2)
Small ribosomal subunit protein eS19A
(2)
Small ribosomal subunit protein eS25A
(2)
Small ribosomal subunit protein eS31
(2)
Small ribosomal subunit protein eS32
(2)
Small ribosomal subunit protein uS13A
(2)
Small ribosomal subunit protein uS9A
(2)
20S ribosomal RNA
(1)
40S ribosomal protein S15, putative
(1)
40S ribosomal protein S21
(1)
40S ribosomal protein S29, putative
(1)
40S ribosomal protein S6
(1)
60S ribosomal protein L41
(1)
Cricket paralysis virus IRES RNA
(1)
Eukaryotic translation initiation factor 2 subunit alpha
(1)
Eukaryotic translation initiation factor 2 subunit beta
(1)
Eukaryotic translation initiation factor 2 subunit gamma
(1)
HCV IRES
(1)
HCV-IRES
(1)
More...
Interacting ligands
(1)
MG : MAGNESIUM ION
(1)
Function and Biology
Biological function
(3)
structural constituent of ribosome
(14)
RNA binding
(6)
protein binding
(6)
Biological process
(4)
translation
(14)
maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
(9)
cytoplasmic translation
(6)
ribosomal small subunit biogenesis
(6)
Biological cell component
(15)
ribonucleoprotein complex
(14)
ribosome
(14)
cytoplasm
(9)
cytosol
(9)
cytosolic small ribosomal subunit
(9)
cytosolic ribosome
(6)
endoplasmic reticulum
(6)
extracellular exosome
(6)
focal adhesion
(6)
membrane
(6)
nucleolus
(6)
nucleoplasm
(6)
nucleus
(6)
small-subunit processome
(6)
90S preribosome
(3)
Sequence and Structure classification
CATH class
(1)
Mainly Alpha
(14)
CATH topology
(1)
Phosducin; domain 2
(14)
Pfam accession / name
(1)
PF01201 : Ribosomal_S8e
(14)
Experimental Information
Refinement software
(2)
REFMAC
(5)
PHENIX
(2)
EM microscope model
(2)
FEI TITAN KRIOS
(12)
FEI POLARA 300
(2)
EM detector name
(3)
FEI FALCON II (4k x 4k)
(12)
FEI FALCON III (4k x 4k)
(1)
GATAN K2 SUMMIT (4k x 4k)
(1)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
Entries 1 to 10 of 14
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Structure of the 40S ABCE1 post-splitting complex in ribosome recycling and translation initiation
Heuer A, Gerovac M, Schmidt C, Trowitzsch S, Preis A, Koetter P, Berninghausen O, Becker T, Beckmann R, Tampe R
Nat Struct Mol Biol
(2017)
[PMID: 28368393 ]
Source organism: Saccharomyces cerevisiae
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-126860 (Preferred)
search this ID
CryoEM structure of 40S-eIF1-eIF1A preinitiation complex
Hussain T, Llacer JL, Fernandez IS, Savva CG, Ramakrishnan V
Cell
(2014)
[PMID: 25417110 ]
Source organisms: Kluyveromyces lactis , Saccharomyces cerevisiae
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-123454 (Preferred)
search this ID
CryoEM structure of a partial yeast 48S preinitiation complex
Hussain T, Llacer JL, Fernandez IS, Savva CG, Ramakrishnan V
Cell
(2014)
[PMID: 25417110 ]
Assembly composition: RNA/protein complex
Assembly name:
Eukaryotic translation initiation factor 2 complex and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-123453 (Preferred)
search this ID
CryoEM structure of 40S-eIF1A-eIF1 complex from yeast
Llacer JL, Hussain T, Ramakrishnan V
Mol Cell
(2015)
[PMID: 26212456 ]
Source organisms: Kluyveromyces lactis , Saccharomyces cerevisiae
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-123455 (Preferred)
search this ID
Mammalian 40S HCV-IRES complex
Yamamoto H, Collier M, Loerke J, Ismer J, Schmidt A, Hilal T, Sprink T, Yamamoto K, Mielke T, Burger J, Shaikh TR, Dabrowski M, Hildebrand PW, Scheerer P, Spahn CMT
EMBO J
(2015)
[PMID: 26604301 ]
Source organisms: Hepacivirus hominis , Oryctolagus cuniculus
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-140329 (Preferred)
search this ID
Structure of the yeast Kluyveromyces lactis small ribosomal subunit in complex with the cricket paralysis virus IRES.
Murray J, Savva CG, Shin BS, Dever TE, Ramakrishnan V, Fernandez IS
Elife
(2016)
[PMID: 27159451 ]
Source organisms: Cricket paralysis virus , Kluyveromyces lactis
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-150925 (Preferred)
search this ID
Cryo-EM structure of a late human pre-40S ribosomal subunit - State B
Ameismeier M, Cheng J, Berninghausen O, Beckmann R
Nature
(2018)
[PMID: 29875412 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-140347 (Preferred)
search this ID
Cryo-EM structure of a late human pre-40S ribosomal subunit - State C
Ameismeier M, Cheng J, Berninghausen O, Beckmann R
Nature
(2018)
[PMID: 29875412 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-140343 (Preferred)
search this ID
Cryo-EM structure of a late human pre-40S ribosomal subunit - State R
Ameismeier M, Cheng J, Berninghausen O, Beckmann R
Nature
(2018)
[PMID: 29875412 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-140341 (Preferred)
search this ID
Structure of a eukaryotic cytoplasmic pre-40S ribosomal subunit
Scaiola A, Pena C, Weisser M, Boehringer D, Leibundgut M, Klingauf-Nerurkar P, Gerhardy S, Panse VG, Ban N
EMBO J
(2018)
[PMID: 29459436 ]
Source organism: Saccharomyces cerevisiae S288C
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-126846 (Preferred)
search this ID
Entries 1 to 10 of 14