All structure family : Ricin (A subunit), domain 1
 
Filter by :
Entry Information
Entry status  (1)
REL
(240)
 
Experimental methods  (2)
X-ray diffraction
(238)
Solution NMR
(2)
 
Authors  (458)
Singh TP
(72)
Kaur P
(66)
Sharma S
(63)
Sinha M
(49)
Kushwaha GS
(42)
Pandey S
(36)
Robertus JD
(31)
Yamini S
(29)
Monzingo AF
(25)
Betzel C
(21)
Bhushan A
(18)
Pandey N
(16)
Mantis NJ
(13)
Rudolph MJ
(13)
Vance DJ
(13)
Chandran T
(12)
Shaw PC
(12)
Vijayan M
(12)
Voelter W
(11)
Cassidy MS
(10)
Krauspenhaar R
(10)
Mantis N
(10)
Sharma A
(10)
Wong KB
(10)
Anslyn EV
(9)
Ernst SR
(9)
Jasheway KR
(9)
Manzano LA
(9)
Millard CB
(9)
Pandey SN
(9)
Pruet JM
(9)
Singh A
(9)
Wang Y
(9)
Day PJ
(8)
Kurinov IV
(8)
Rong Y
(8)
Stoeva S
(8)
Uckun FM
(8)
Chambery A
(7)
Mak AN
(7)
Saito R
(7)
Shoemaker CB
(7)
Wiget PA
(7)
Almo SC
(6)
Au SW
(6)
Berisio R
(6)
Di Maro A
(6)
Gabdoulkhakov AG
(6)
Ho M
(6)
Ho MC
(6)
Huang Q
(6)
Konareva N
(6)
Mikhailov AM
(6)
Pascal JM
(6)
Ruggiero A
(6)
Schramm VL
(6)
Singh PK
(6)
Singh SB
(6)
Sturm MB
(6)
Tang Y
(6)
Wong YT
(6)
Barciszewski J
(5)
Burshteyn F
(5)
Cassidy M
(5)
Cheung J
(5)
Dong Y
(5)
Franklin M
(5)
Franklin MC
(5)
Gary E
(5)
Gary EN
(5)
Herrera C
(5)
Irvin JD
(5)
James MN
(5)
Jin S
(5)
Kamat I
(5)
Kim BW
(5)
Kim MK
(5)
Lee B-G
(5)
Lee BG
(5)
Legler PM
(5)
Liu S
(5)
Meyer A
(5)
Mikhailov A
(5)
Parente A
(5)
Song HK
(5)
Suh SW
(5)
Carra JH
(4)
Citores L
(4)
Compton JR
(4)
Day P
(4)
Ferreras JM
(4)
Fraser ME
(4)
Fulop V
(4)
Férreras JM
(4)
Fülöp V
(4)
Girbes T
(4)
Girbés T
(4)
Iglesias R
(4)
Jasheway K
(4)
Karande AA
(4)
 
More...
 
Homo / hetero assembly  (2)
homo
(172)
hetero
(68)
 
Assembly composition  (3)
protein structure
(172)
protein/protein complex
(67)
RNA/protein complex
(1)
 
Assembly polymer count  (6)
monomer
(162)
dimer
(66)
hexamer
(5)
trimer
(5)
tetramer
(1)
undecamer
(1)
 
Resolution distribution
0.5 - 1
(1)
1.0 - 1.5
(17)
1.5 - 2
(118)
2.0 - 2.5
(58)
2.5 - 3
(38)
3.0 - 3.5
(5)
3.5 - 4
(1)
 
Release year distribution
1990 - 1995
(16)
1995 - 2000
(27)
2000 - 2005
(43)
2005 - 2010
(56)
2010 - 2015
(96)
2015 - 2020
(43)
 
Journal  (43)
To be published
(63)
Proteins
(22)
J Mol Biol
(16)
Acta Crystallogr D Biol Crystallogr
(11)
J Biol Chem
(10)
Biochim Biophys Acta
(9)
J Biosci
(9)
J Med Chem
(8)
FEBS J
(6)
Nucleic Acids Res
(6)
Proc Natl Acad Sci U S A
(6)
BMC Struct Biol
(5)
Biochem Biophys Rep
(5)
Biochem Biophys Res Commun
(5)
Biochem J
(5)
Protein Sci
(5)
Eur J Biochem
(4)
J Struct Biol
(4)
Acta Crystallogr Sect F Struct Biol Cryst Commun
(3)
Arzneimittelforschung
(3)
Biochemistry
(3)
Structure
(3)
Acta Crystallogr F Struct Biol Commun
(2)
Bioorg Med Chem Lett
(2)
Eur J Med Chem
(2)
FEBS Lett
(2)
Glycobiology
(2)
Nat Struct Biol
(2)
Protein Eng
(2)
Toxins (Basel)
(2)
ACS Med Chem Lett
(1)
Arch Biochem Biophys
(1)
Biochem Pharmacol
(1)
Biopolymers
(1)
Cell
(1)
J Biomed Sci
(1)
MAbs
(1)
Med Chem
(1)
Mol Biosyst
(1)
Protein Eng Des Sel
(1)
Protein Pept. Lett.
(1)
Sci Rep
(1)
Toxicon
(1)
 
Macromolecules
Organism superkingdom  (3)
Eukaryota
(234)
Bacteria
(5)
Viruses
(1)
 
Organism name  (29)
Momordica balsamina
(63)
Ricinus communis
(58)
Momordica charantia
(21)
Viscum album
(18)
Phytolacca americana
(12)
Trichosanthes kirilowii
(12)
Abrus precatorius
(6)
Phytolacca dioica
(6)
Saponaria officinalis
(6)
Hordeum vulgare
(5)
Dianthus caryophyllus
(4)
Sambucus ebulus
(4)
Zea mays
(4)
Trichosanthes anguina
(3)
Escherichia coli
(2)
Shigella dysenteriae
(2)
Suregada multiflora
(2)
Bougainvillea spectabilis
(1)
Bryonia dioica
(1)
Cinnamomum camphora
(1)
Cucurbita moschata
(1)
Escherichia coli O157:H7
(1)
Escherichia phage 933W
(1)
Iris x hollandica
(1)
Luffa acutangula
(1)
Luffa aegyptiaca
(1)
Phytolacca acinosa
(1)
Silene chalcedonica
(1)
Squilla maritima
(1)
 
Molecule name  (112)
rRNA N-glycosidase
(209)
rRNA N-glycosylase
(73)
Ribosome inactivating protein
(62)
Ricin
(57)
Ricin A chain
(57)
Ricin B chain
(57)
Ribosome-inactivating protein
(29)
Ribosome-inactivating protein chain A
(14)
Ribosome-inactivating protein chain B
(14)
Beta-galactoside-specific lectin 1
(13)
Beta-galactoside-specific lectin 1 chain A isoform 1
(13)
Beta-galactoside-specific lectin 1 chain B
(13)
Beta-galactoside-specific lectin I
(13)
Beta-galactoside-specific lectin I chain A isoform 1
(13)
Beta-galactoside-specific lectin I chain B
(13)
ML-I A
(13)
ML-I B
(13)
MLA
(13)
MLB
(13)
Viscumin
(13)
Alpha-TCS
(11)
Ribosome-inactivating protein alpha-trichosanthin
(11)
Ribosome-inactivating protein momordin I
(11)
Alpha-MMC
(10)
Alpha-momorcharin
(10)
Galactose-binding type-2 ribosome-inactivating protein
(9)
Seed lectin-like
(9)
Antiviral protein I
(6)
PAP-C
(6)
PAP-I
(6)
PAP-R
(6)
Beta-galactoside-specific lectin 4
(5)
Beta-galactoside-specific lectin 4 chain A
(5)
Beta-galactoside-specific lectin 4 chain B
(5)
Beta-galactoside-specific lectin IV
(5)
Beta-galactoside-specific lectin IV chain A
(5)
Beta-galactoside-specific lectin IV chain B
(5)
ML-4 A
(5)
ML-4B
(5)
ML-IV A
(5)
ML-IV B
(5)
Protein synthesis inhibitor I
(5)
Ribosome-inactivating protein I
(5)
Saporin-L3
(5)
Abrin-a
(4)
Abrin-a A chain
(4)
Abrin-a B chain
(4)
Antiviral protein DAP-30
(4)
Antiviral protein S
(4)
Linker peptide
(4)
PAP-S
(4)
RIP DAP-30
(4)
Ribosome-inactivating protein PD-L3/PD-L4
(4)
Ribosome-inactivating protein dianthin-30
(4)
rRNA N-glycosidase PD-L3/PD-L4
(4)
SGSL
(3)
Seed lectin
(3)
Seed lectin Aalpha chain
(3)
Seed lectin Abeta chain
(3)
Seed lectin B chain
(3)
AAG-A
(2)
AAG-B
(2)
Agglutinin I
(2)
Agglutinin-1
(2)
Agglutinin-1 chain A
(2)
Agglutinin-1 chain B
(2)
B-32 protein
(2)
B-MMC
(2)
MAP 30
(2)
Ribosome-inactivating protein 3
(2)
Ribosome-inactivating protein PD-L1/PD-L2
(2)
Ribosome-inactivating protein alpha chain
(2)
Ribosome-inactivating protein beta chain
(2)
Ribosome-inactivating protein beta-momorcharin
(2)
Ribosome-inactivating protein gelonin
(2)
SLT-2 A subunit
(2)
SLT-2a
(2)
SLT-IIa
(2)
Shiga toxin subunit A
(2)
Shiga-like toxin 2 subunit A
(2)
Verocytotoxin 2 subunit A
(2)
Verotoxin 2 subunit A
(2)
rRNA N-glycosidase 2
(2)
rRNA N-glycosidase PD-L1/PD-L2
(2)
Agglutinin
(1)
Agglutinin A chain
(1)
Agglutinin B chain
(1)
Antiviral protein II
(1)
Antiviral protein II/III
(1)
Antiviral protein III
(1)
Antiviral protein alpha
(1)
BD1
(1)
Bouganin
(1)
Cucurmosin
(1)
PAP-II
(1)
PAP-III
(1)
PAP-alpha
(1)
Pokeweed antiviral protein
(1)
RCA
(1)
Ribosome inactivating type 1 protein
(1)
 
More...
 
Molecule type  (1)
Protein
(240)
 
Gene names  (22)
RIP
(62)
LOC111023549
(9)
MCL1
(9)
PAP1
(6)
RIP30
(5)
RND81_04G013200
(5)
RND81_04G017000
(5)
ebu1
(4)
stx2A
(3)
AAG
(2)
CRIP3
(2)
GEL
(2)
L0103
(2)
MAP30
(2)
stxA
(2)
stxA2
(2)
ECs_1205
(1)
PAP2
(1)
PAPII
(1)
SAP6
(1)
stx 2 A-subunit
(1)
stx2 A-subunit
(1)
 
Interacting Molecules  (35)
Beta-galactoside-specific lectin 1 chain B
(13)
Ribosome-inactivating protein
(13)
Beta-galactoside-specific lectin 4 chain B
(5)
Large ribosomal subunit protein P2
(3)
Ricin B chain
(3)
Seed lectin B chain
(3)
Agglutinin-1 chain B
(2)
Large ribosomal subunit protein P2B
(2)
Seed lectin Aalpha chain
(2)
Shiga toxin subunit B
(2)
Shiga-like toxin 2 subunit B
(2)
Abrin-a B chain
(1)
Agglutinin B chain
(1)
Anti-Ricin A-chain Single Domain Antibody (sdAb) A3C8
(1)
Camelid antibody
(1)
Camelid nanobody
(1)
Camelid nanobody (VHH3)
(1)
Camelid nanobody (VHH4)
(1)
F8(JOB10) VHH antibody
(1)
Ig-like domain-containing protein
(1)
Lectin
(1)
RNA (5'-R(*AP*G)-3')
(1)
Ricin B lectin domain-containing protein
(1)
Shiga toxin 2e B
(1)
Stx2B
(1)
V1C7 VHH antibody
(1)
V1C7 VHH antibody G29R variant
(1)
VHH antibody
(1)
VHH single chain antibody E1
(1)
VHH single chain antibody V1C7
(1)
VHH single chain antibody V5E1
(1)
VHH1 camelid nanobody
(1)
VHH2(F5) antibody
(1)
mAb6c2 fab-Heavy chain
(1)
mAb6c2 fab-Light chain
(1)
 
Interacting ligands  (109)
NAG : 2-acetamido-2-deoxy-beta-D-glucopyranose
(113)
GOL : GLYCEROL
(63)
SO4 : SULFATE ION
(34)
ADE : ADENINE
(24)
EDO : 1,2-ETHANEDIOL
(17)
CL : CHLORIDE ION
(15)
BMA : beta-D-mannopyranose
(8)
PEG : DI(HYDROXYETHYL)ETHER
(8)
MAN : alpha-D-mannopyranose
(6)
PO4 : PHOSPHATE ION
(6)
AZI : AZIDE ION
(4)
BGC : beta-D-glucopyranose
(4)
FMP : FORMYCIN-5'-MONOPHOSPHATE
(4)
MLA : MALONIC ACID
(4)
ACT : ACETATE ION
(3)
AMP : ADENOSINE MONOPHOSPHATE
(3)
FMC : (1S)-1-(7-amino-1H-pyrazolo[4,3-d]pyrimidin-3-yl)-1,4-anhydro-D-ribitol
(3)
GAL : beta-D-galactopyranose
(3)
GLC : alpha-D-glucopyranose
(3)
GUN : GUANINE
(3)
MY6 : 2-amino-7-methyl-1,7-dihydro-6H-purin-6-one
(3)
NCA : NICOTINAMIDE
(3)
NDG : 2-acetamido-2-deoxy-alpha-D-glucopyranose
(3)
URA : URACIL
(3)
ACY : ACETIC ACID
(2)
ADN : ADENOSINE
(2)
C2X : 9,9'-{(2R,3R,3aR,5S,7aR,9R,10R,10aR,12S,23R,25aR,27R,28R,28aR,30S,32aR,35aR,37S,39aR)-9-(6-amino-9H-purin-9-yl)-34-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-5,12,23,30,37-pentahydroxy-3,10,28-trimethoxy-5,12,23,30,37-pentaoxidotetracosahydro-2H,7H,25H-trifuro[3,2-f:3',2'-l:3'',2''-x]pyrrolo[3,4-r][1,3,5,9,11,15,17,21,23,27,29,2,4,10,16,22,28]undecaoxazapentaphosphacyclopentatriacontine-2,27-diyl}bis(2-amino-3,9-dihydro-6H-purin-6-one)
(2)
DIO : 1,4-DIETHYLENE DIOXIDE
(2)
FMT : FORMIC ACID
(2)
H35 : N-(FURAN-2-YLMETHYL)-7H-PURIN-6-AMINE
(2)
IMD : IMIDAZOLE
(2)
M7G : 7N-METHYL-8-HYDROGUANOSINE-5'-DIPHOSPHATE
(2)
MGP : 7-METHYL-GUANOSINE-5'-TRIPHOSPHATE
(2)
NA : SODIUM ION
(2)
P6C : 2-AMINO-4-ISOPROPYL-PTERIDINE-6-CARBOXYLIC ACID
(2)
PG4 : TETRAETHYLENE GLYCOL
(2)
PRD_900004 : beta-lactose
(2)
PRD_900006 : trehalose
(2)
PRD_900017 : triacetyl-beta-chitotriose
(2)
PT1 : PTEROIC ACID
(2)
RIP : beta-D-ribopyranose
(2)
XYP : beta-D-xylopyranose
(2)
ZN : ZINC ION
(2)
0RB : 2-amino-4-oxo-N-(1H-1,2,3-triazol-5-ylmethyl)-1,4-dihydropteridine-7-carboxamide
(1)
0XE : 5,6-dihydroxy-4-oxo-2-phenyl-4H-chromen-7-yl beta-D-glucopyranosiduronic acid
(1)
19J : 2-[2-[(2-azanyl-4-oxidanylidene-1H-pteridin-7-yl)carbonylamino]ethanoylamino]ethanoic acid
(1)
19L : (2S)-2-[[(2S)-2-[(2-azanyl-4-oxidanylidene-1H-pteridin-7-yl)carbonylamino]-3-oxidanyl-propanoyl]amino]-3-(1H-indol-3-yl)propanoic acid
(1)
19M : (2S)-2-[[(2S)-2-[2-[(2-azanyl-4-oxidanylidene-1H-pteridin-7-yl)carbonylamino]ethanoylamino]-3-phenyl-propanoyl]amino]-3-phenyl-propanoic acid
(1)
1MX : 2-amino-4-oxo-N-{2-[(phenylcarbamoyl)amino]ethyl}-3,4-dihydropteridine-7-carboxamide
(1)
211 : 2,2',2''-NITRILOTRIETHANOL
(1)
5GP : GUANOSINE-5'-MONOPHOSPHATE
(1)
5MX : benzyl (2-{[(2-amino-4-oxo-3,4-dihydropteridin-7-yl)carbonyl]amino}ethyl)carbamate
(1)
7DG : 7-DEAZAGUANINE
(1)
9DG : 9-DEAZAGUANINE
(1)
AAG : N-ALPHA-L-ACETYL-ARGININE
(1)
ACM : ACETAMIDE
(1)
ALA : ALANINE
(1)
AMU : N-acetyl-beta-muramic acid
(1)
APT : 2-AMINO-6-[(4-CARBOXY-PHENYLAMINO)-METHYL]-4-HYDROXY-PTERIDIN-1-IUM
(1)
ARG : ARGININE
(1)
ASC : ASCORBIC ACID
(1)
BFW : 4-N-Furfurylcytosine
(1)
C5P : CYTIDINE-5'-MONOPHOSPHATE
(1)
CCN : ACETONITRILE
(1)
CDP : CYTIDINE-5'-DIPHOSPHATE
(1)
CMP : ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
(1)
CTN : 4-AMINO-1-BETA-D-RIBOFURANOSYL-2(1H)-PYRIMIDINONE
(1)
CTP : CYTIDINE-5'-TRIPHOSPHATE
(1)
CYT : 6-AMINOPYRIMIDIN-2(1H)-ONE
(1)
D5M : 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE
(1)
DA2 : NG,NG-DIMETHYL-L-ARGININE
(1)
DDP : 2,4-DIAMINO-4,6-DIHYDROXYPYRIMIDINE
(1)
DYN : 5'-O-[(S)-{[(3R,4R)-1-[(4-amino-5H-pyrrolo[3,2-d]pyrimidin-7-yl)methyl]-4-({[(S)-hydroxy(3-hydroxypropoxy)phosphoryl]oxy}methyl)pyrrolidin-3-yl]oxy}(hydroxy)phosphoryl]-3'-O-[(R)-hydroxy(4-hydroxybutoxy)phosphoryl]-2'-O-methylguanosine
(1)
EJ5 : 4-[3-(2-amino-4-hydroxy-6-oxo-1,6-dihydropyrimidin-5-yl)propyl]benzoic acid
(1)
ETN : METHYLETHYLAMINE
(1)
FCA : alpha-D-fucopyranose
(1)
FGM : (2R,3R)-2-hexyl-3-hydroxytridecanoic acid
(1)
FRU : beta-D-fructofuranose
(1)
FUC : alpha-L-fucopyranose
(1)
GLA : alpha-D-galactopyranose
(1)
GLN : GLUTAMINE
(1)
GLY : GLYCINE
(1)
JP2 : 2-amino-4-oxo-1,4-dihydropteridine-7-carboxylic acid
(1)
JP3 : 2-amino-N-(furan-2-ylmethyl)-4-oxo-3,4-dihydropteridine-7-carboxamide
(1)
KAN : KANAMYCIN A
(1)
LAC : LACTIC ACID
(1)
LP5 : (R)-((2R,3S,4R,5R,6R)-3-HYDROXY-2-(HYDROXYMETHYL)-5-((R)-3-HYDROXYTETRADECANAMIDO)-6-(PHOSPHONOOXY)TETRAHYDRO-2H-PYRAN-4-YL) 3-HYDROXYTETRADECANOATE
(1)
MES : 2-(N-MORPHOLINO)-ETHANESULFONIC ACID
(1)
MOG : 5-AMINO-2-METHYL-6H-OXAZOLO[5,4-D]PYRIMIDIN-7-ONE
(1)
NDP : NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE
(1)
NEO : NEOPTERIN
(1)
NMU : N-METHYLUREA
(1)
PGE : TRIETHYLENE GLYCOL
(1)
PRD_900001 : alpha-maltose
(1)
PTD : PENTANEDIAL
(1)
RIB : alpha-D-ribofuranose
(1)
RS8 : N-[(2-amino-4-oxo-1,4-dihydropteridin-7-yl)carbonyl]glycyl-L-phenylalanine
(1)
SGI : 3-(4-hydroxyphenyl)propanamide
(1)
SPD : SPERMIDINE
(1)
TAM : TRIS(HYDROXYETHYL)AMINOMETHANE
(1)
 
More...
 
Function and Biology
EC number / name  (1)
3.2.2.22 : rRNA N-glycosylase
(234)
 
Biological function  (5)
rRNA N-glycosylase activity
(240)
hydrolase activity
(129)
toxin activity
(129)
nucleotide binding
(60)
protein binding
(1)
 
Biological process  (8)
negative regulation of translation
(240)
modulation of process of another organism
(127)
defense response
(106)
regulation of defense response to virus
(16)
defense response to virus
(12)
defense response to fungus
(5)
killing of cells of another organism
(5)
symbiont-mediated modulation of host virulence
(2)
 
Biological cell component  (2)
cytoplasm
(5)
extracellular region
(2)
 
Sequence and Structure classification
SCOP fold  (1)
Ribosome inactivating proteins (RIP)
(83)
 
SCOP family  (2)
Plant cytotoxins
(79)
Shiga toxin, A-chain
(4)
 
CATH class  (3)
Alpha Beta
(240)
Few Secondary Structures
(236)
Mainly Beta
(1)
 
CATH topology  (3)
Ricin (A subunit); domain 1
(240)
Ricin (A Subunit), domain 2
(236)
Trefoil (Acidic Fibroblast Growth Factor, subunit A)
(1)
 
Pfam accession / name  (2)
PF00161 : RIP
(234)
PF00652 : Ricin_B_lectin
(1)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(216)
 
Diffraction radiation source type  (3)
Synchrotron
(154)
Rotating anode
(62)
Sealed tube
(1)
 
Diffraction source  (51)
ESRF BEAMLINE BM14
(65)
RIGAKU RU300
(17)
RIGAKU RU200
(16)
NSLS BEAMLINE X29A
(11)
BRUKER AXS MICROSTAR
(9)
EMBL/DESY, HAMBURG BEAMLINE X13
(7)
APS BEAMLINE 24-ID-E
(6)
RIGAKU MICROMAX-007
(6)
EMBL/DESY, HAMBURG BEAMLINE X11
(5)
ELETTRA BEAMLINE 5.2R
(4)
EMBL/DESY, HAMBURG BEAMLINE BW7A
(4)
EMBL/DESY, HAMBURG BEAMLINE BW7B
(4)
PHOTON FACTORY BEAMLINE BL-17A
(4)
ALS BEAMLINE 5.0.2
(3)
ALS BEAMLINE 5.0.3
(3)
BRUKER AXS MICROSTAR-H
(3)
PHOTON FACTORY BEAMLINE BL-6A
(3)
PHOTON FACTORY BEAMLINE BL-6B
(3)
RIGAKU MICROMAX-007 HF
(3)
APS BEAMLINE 19-BM
(2)
APS BEAMLINE 22-ID
(2)
APS BEAMLINE 24-ID-C
(2)
ELLIOTT GX-20
(2)
ESRF BEAMLINE ID14-1
(2)
MAX II BEAMLINE I711
(2)
MPG/DESY, HAMBURG BEAMLINE BW6
(2)
NSLS BEAMLINE X12B
(2)
NSLS BEAMLINE X12C
(2)
NSLS BEAMLINE X26C
(2)
OTHER
(2)
RIGAKU RUH3R
(2)
ALS BEAMLINE 8.3.1
(1)
APS BEAMLINE 21-ID-E
(1)
CLSI BEAMLINE 08B1-1
(1)
DIAMOND BEAMLINE I03
(1)
DIAMOND BEAMLINE I04
(1)
DIAMOND BEAMLINE I24
(1)
ENRAF-NONIUS FR591
(1)
ESRF BEAMLINE ID13
(1)
ESRF BEAMLINE ID29
(1)
NSLS BEAMLINE X9A
(1)
NSRRC BEAMLINE BL13B1
(1)
PAL/PLS BEAMLINE 6B
(1)
PETRA III, DESY BEAMLINE P11
(1)
RIGAKU RUH2R
(1)
RIGAKU ULTRAX 18
(1)
SPRING-8 BEAMLINE BL12B2
(1)
SPRING-8 BEAMLINE BL44B2
(1)
SRS BEAMLINE PX7.2
(1)
SSRF BEAMLINE BL17U
(1)
SSRL BEAMLINE BL7-1
(1)
 
Synchrotron site  (18)
ESRF
(69)
EMBL/DESY, Hamburg
(20)
NSLS
(16)
APS
(13)
Photon Factory
(10)
ALS
(7)
ELETTRA
(4)
Diamond
(3)
MAX II
(2)
MPG/DESY, HAMBURG
(2)
SPring-8
(2)
CLSI
(1)
NSRRC
(1)
PAL/PLS
(1)
PETRA III, DESY
(1)
SRS
(1)
SSRF
(1)
SSRL
(1)
 
Diffraction detector type  (5)
CCD
(133)
Image plate
(67)
Area detector
(8)
Diffractometer
(5)
Pixel
(5)
 
Refinement software  (9)
REFMAC
(121)
X-PLOR
(50)
CNS
(36)
PHENIX
(30)
SHELXL-97
(5)
PROFFT
(1)
PROLSQ
(1)
RESTRAIN
(1)
TNT
(1)
 
NMR
NMR software packages  (5)
Amber
(1)
CYANA
(1)
MOLMOL
(1)
NMRPipe
(1)
X-PLOR
(1)
 
NMR Field Strength
400.0 - 500
(1)
500.0 - 600
(2)
600.0 - 700
(2)
700.0 - 800
(1)
 
Representative Structures
Representative Structures
100%
95%
90%
70%
50%
40%
30%
...
Entries 1 to 10 of 240
Entries 1 to 10 of 240
 Select all entries on this page
RTA1-33/44-198 (RVEC) bound to Single Domain Antibody A3C8
Compton JR, Legler PM
MAbs (2017) [PMID: 27660893  ]
Assembly composition: protein/protein complex
Bound ligands: SO4   
Assembly name: Ricin A chain and IG-heavy chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-230754 (Preferred)   search this ID
PDBe-KB: P02879   
X-ray diffraction
2.73Å resolution
Released: 19 Oct 2016
Model geometry
Fit model/data
5sv3
5sv3
5sv3
Ricin A-chain variant 1-33/44-198 with engineered disulfide bond
Compton JR, Legler PM, Millard CB
Proteins (2011) [PMID: 21387408  ]
Source organism: Ricinus communis  
Assembly composition: protein only structure
Bound ligands: SO4   
Assembly name: Ricin A chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-136287 (Preferred)   search this ID
PDBe-KB: P02879   
X-ray diffraction
2.28Å resolution
Released: 10 Nov 2010
Model geometry
Fit model/data
3lc9
3lc9
3lc9
Ricin A-chain variant 1-33/44-198 with engineered disulfide bond, R48C/T77C/D75N
Legler PM, Compton JR, Millard CB
Toxins (Basel) (2013) [PMID: 23364220  ]
Source organism: Ricinus communis  
Assembly composition: protein only structure
Bound ligands: SO4   
Assembly name: Ricin A chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-136287 (Preferred)   search this ID
PDBe-KB: P02879   
X-ray diffraction
2.25Å resolution
Released: 13 Feb 2013
Model geometry
Fit model/data
4imv
4imv
4imv
Stabilized Ricin Immunogen 1-33/44-198
Legler PM, Compton JR, Millard CB
Proteins (2011) [PMID: 21387408  ]
Source organism: Ricinus communis  
Assembly composition: protein only structure
Bound ligands: SO4   
Assembly name: Ricin A chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-136287 (Preferred)   search this ID
PDBe-KB: P02879   
X-ray diffraction
2.08Å resolution
Released: 10 Nov 2010
Model geometry
Fit model/data
3mk9
3mk9
3mk9
Crystal Structure of the complex of type I ribosome inactivating protein with fucose at 2.1A resolution
Kushwaha GS, Pandey N, Perbandt M, Betzel C, Sinha M, Kaur P, Sharma S, Singh TP
To be published
Source organism: Momordica balsamina  
Assembly composition: protein only structure
Bound ligands: GOL    FCA    FCA   
Carbohydrate polymer components:
Molecule 1 - NAG(2)
Assembly name: rRNA N-glycosylase (Preferred)   search this complex
PDBe complex ID: PDB-CPX-112979 (Preferred)   search this ID
PDBe-KB: D9J2T9   
X-ray diffraction
2.11Å resolution
Released: 30 Jun 2010
Model geometry
Fit model/data
3n31
3n31
3n31
complex of Ricin A chain and pyrimidine-based inhibitor
Bai Y, Monzingo AF, Robertus JD
Arch Biochem Biophys (2009) [PMID: 19138659  ]
Source organism: Ricinus communis  
Assembly composition: protein only structure
Bound ligands: EJ5    EJ5   
Assembly name: Ricin A chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-136287 (Preferred)   search this ID
PDBe-KB: P02879   
X-ray diffraction
2.5Å resolution
Released: 7 Apr 2009
Model geometry
Fit model/data
3ej5
3ej5
3ej5
Crystal structure of ricin bound with formycin monophosphate
Monzingo AF, Robertus JD
J Mol Biol (1992) [PMID: 1433290  ]
Source organism: Ricinus communis  
Assembly composition: protein/protein complex
Bound ligands: FMP    FMP   
Carbohydrate polymer components:
Molecule 1 - BGC(1), GAL(1)
Molecule 2 - NAG(2)
Assembly name: Ricin A chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-136288 (Preferred)   search this ID
PDBe-KB: P02879   
X-ray diffraction
2.8Å resolution
Released: 31 Aug 2011
Model geometry
Fit model/data
3rti
3rti
3rti
RTA in complex with N-(furanylmethyl)-7-carbamoyl-pterin
Jasheway KR, Robertus JD
Eur J Med Chem (2011) [PMID: 21641093  ]
Source organism: Ricinus communis  
Assembly composition: protein only structure
Bound ligands: JP3    JP3   
Assembly name: Ricin A chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-136287 (Preferred)   search this ID
PDBe-KB: P02879   
X-ray diffraction
1.89Å resolution
Released: 22 Jun 2011
Model geometry
Fit model/data
3px9
3px9
3px9
Atomic resolution structure of cucurmosin, a novel type 1 RIP from the sarcocarp of Cucurbita moschata
Chen L
J Struct Biol (2008) [PMID: 18652900  ]
Source organism: Cucurbita moschata  
Assembly composition: protein only structure
Bound ligands: EDO    PO4   
Carbohydrate polymer components:
Assembly name: rRNA N-glycosylase (Preferred)   search this complex
PDBe complex ID: PDB-CPX-112085 (Preferred)   search this ID
PDBe-KB: D0VWS7   
X-ray diffraction
1Å resolution
Released: 7 Oct 2008
Model geometry
Fit model/data
3bwh
3bwh
3bwh
Crystal structure of Ricin A-chain in complex with the cyclic tetranucleotide inhibitor, a transition state analogue
Ho M, Sturm MB, Goldman JD, Almo SC, Schramm VL
Proc Natl Acad Sci U S A (2009) [PMID: 19920175  ]
Source organism: Ricinus communis  
Assembly composition: protein only structure
Bound ligands: C2X    SO4   
Assembly name: Ricin A chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-136287 (Preferred)   search this ID
PDBe-KB: P02879   
X-ray diffraction
2Å resolution
Released: 8 Dec 2009
Model geometry
Fit model/data
3hio
3hio
3hio
...
Entries 1 to 10 of 240
Entries 1 to 10 of 240