All structure family : S16 Ribosomal Protein; Chain: A;
 
Filter by :
Entry Information
Entry status  (1)
REL
(100)
 
Experimental methods  (3)
X-ray diffraction
(92)
Electron Microscopy
(7)
Solution NMR
(1)
 
Authors  (236)
Demirci H
(44)
Ramakrishnan V
(39)
Dahlberg AE
(38)
Gregory ST
(38)
Jogl G
(38)
Murphy IV F
(37)
Murphy E
(27)
Murphy FV
(25)
Carr J
(18)
Agris PF
(10)
Belardinelli R
(10)
Clemons Jr WM
(10)
Blanchard S
(9)
Blanchard SC
(9)
Brodersen DE
(9)
Carr JF
(9)
Carter AP
(9)
Murphy EL
(9)
Wang L
(9)
Wimberly BT
(9)
Kelley AC
(8)
Malkiewicz A
(8)
Murphy F
(8)
Ng CL
(8)
Clemons WM
(7)
Ogle JM
(7)
Tarry MJ
(7)
Morgan-Warren RJ
(6)
Murphy IV FV
(6)
Vendeix FA
(6)
Vendeix FAP
(6)
Weixlbaumer A
(6)
Akbergenov R
(5)
Bottger EC
(5)
Böttger EC
(5)
Dubbaka SR
(5)
Dunham CM
(5)
Duscha S
(5)
Fucini P
(5)
Kaminishi T
(5)
Lang K
(5)
Matt T
(5)
Meyer M
(5)
Perez-Fernandez D
(5)
Puglisi JD
(5)
Shcherbakov D
(5)
Soltis SM
(5)
Suzuki T
(5)
Vasella A
(5)
Boukari H
(4)
Cantara WA
(4)
Chen J
(4)
Choi J
(4)
Dominissini D
(4)
Dubakka SR
(4)
Dziergowska A
(4)
Ehrenberg M
(4)
Fernandez IS
(4)
Fernández IS
(4)
Freihofer P
(4)
Ieong KW
(4)
Kudyba I
(4)
Leong NC
(4)
Morgan-Warren R
(4)
Nandurikar RS
(4)
O'Leary SE
(4)
Patak R
(4)
Petrov A
(4)
Prabhakar A
(4)
Rechavi G
(4)
Reddy MSK
(4)
Schluenzen F
(4)
Soltis M
(4)
Takemoto C
(4)
Thommes P
(4)
Vaddi S
(4)
Yokoyama S
(4)
Clemons WM
(3)
Guowei W
(3)
Hanawa-Suetsugu K
(3)
Hartsch T
(3)
Joseph S
(3)
Kawazoe M
(3)
Phelps SS
(3)
Selmer M
(3)
Shirouzu M
(3)
Wilson DN
(3)
Wu G
(3)
Yu YT
(3)
Agrawal R
(2)
Agrawal RK
(2)
Ban N
(2)
Bieri P
(2)
Boehringer D
(2)
Cantara W
(2)
Connell SR
(2)
Gustilo EM
(2)
Haque ME
(2)
Harms JM
(2)
Hussain T
(2)
 
More...
 
Homo / hetero assembly  (2)
hetero
(98)
homo
(2)
 
Assembly composition  (2)
RNA/protein complex
(98)
protein structure
(2)
 
Assembly polymer count  (10)
21-mer
(43)
23-mer
(35)
22-mer
(9)
24-mer
(4)
25-mer
(2)
32-mer
(2)
monomer
(2)
26-mer
(1)
27-mer
(1)
37-mer
(1)
 
Resolution distribution
1.5 - 2
(1)
2.0 - 2.5
(1)
2.5 - 3
(11)
3.0 - 3.5
(55)
3.5 - 4
(31)
 
Release year distribution
1995 - 2000
(2)
2000 - 2005
(19)
2005 - 2010
(15)
2010 - 2015
(59)
2015 - 2020
(15)
 
Journal  (16)
To be published
(23)
RNA
(14)
Nat Struct Mol Biol
(13)
Nat Commun
(11)
Cell
(9)
Nature
(5)
Proc Natl Acad Sci U S A
(5)
Science
(5)
J Mol Biol
(4)
EMBO J
(2)
J Biol Chem
(2)
Structure
(2)
iScience
(2)
Antimicrob Agents Chemother
(1)
Chem Biol
(1)
Nucleic Acids Res
(1)
 
Macromolecules
Organism superkingdom  (2)
Bacteria
(95)
Eukaryota
(5)
 
Organism name  (6)
Thermus thermophilus HB8
(71)
Thermus thermophilus
(23)
Bos taurus
(2)
Spinacia oleracea
(2)
Aquifex aeolicus
(1)
Sus scrofa
(1)
 
Molecule name  (9)
30S ribosomal protein S16
(95)
Small ribosomal subunit protein bS16
(95)
28S ribosomal protein S16, mitochondrial
(2)
30S ribosomal protein S16, chloroplastic
(2)
MRP-S16
(2)
S16mt
(2)
Small ribosomal subunit protein bS16c
(2)
Small ribosomal subunit protein bS16m
(2)
MITORIBOSOMAL PROTEIN BS16M, MRPS16
(1)
 
Molecule type  (1)
Protein
(100)
 
Gene names  (6)
rpsP
(95)
TTHA1035
(93)
rps16
(3)
MRPS16
(2)
RPMS16
(2)
aq_123
(1)
 
Interacting Molecules  (164)
16S ribosomal RNA
(95)
Small ribosomal subunit protein bS18
(93)
Small ribosomal subunit protein bS20
(93)
Small ribosomal subunit protein bS6
(93)
Small ribosomal subunit protein uS10
(93)
Small ribosomal subunit protein uS11
(93)
Small ribosomal subunit protein uS12
(93)
Small ribosomal subunit protein uS13
(93)
Small ribosomal subunit protein uS15
(93)
Small ribosomal subunit protein uS19
(93)
Small ribosomal subunit protein uS2
(93)
Small ribosomal subunit protein uS3
(93)
Small ribosomal subunit protein uS4
(93)
Small ribosomal subunit protein uS5
(93)
Small ribosomal subunit protein uS7
(93)
Small ribosomal subunit protein uS9
(93)
Small ribosomal subunit protein bTHX
(92)
Small ribosomal subunit protein uS14
(78)
Small ribosomal subunit protein uS17
(78)
Small ribosomal subunit protein uS8
(78)
Messenger RNA
(14)
ribosomal protein S14
(11)
ribosomal protein S17
(11)
ribosomal protein S8
(11)
5'-R(*UP*UP*CP*AP*AP*AP)-3'
(5)
A-SITE MESSENGER RNA FRAGMENT
(5)
RNA (5'-D(P*GP*AP*CP*UP*(70U)P*UP*UP*(12A)P*AP*(PSU)P*C)-3')
(4)
mRNA A-site fragment
(4)
30S ribosomal protein S14 type Z
(3)
30S ribosomal protein S17
(3)
30S ribosomal protein S8
(3)
5'-R(*CP*CP*UP*CP*CP*CP*UP*CM0P*AP*CP*6MZP*AP *GP*GP*AP*GP*G)-3'
(3)
5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*C)-3'
(3)
5'-R(*GP*GP*GP*AP*UP*UP*GP*AP*AP*AP*AP*UP*CP*CP*CP)-3'
(3)
5'-R(*UP*UP*U)-3'
(3)
P-SITE MESSENGER RNA FRAGMENT
(3)
Small ribosomal subunit protein mS25
(3)
Small ribosomal subunit protein mS26
(3)
Small ribosomal subunit protein mS29
(3)
Small ribosomal subunit protein mS31
(3)
Small ribosomal subunit protein mS33
(3)
Small ribosomal subunit protein mS38
(3)
Small ribosomal subunit protein mS39
(3)
Small ribosomal subunit protein mS40
(3)
Small ribosomal subunit protein uS10m
(3)
Small ribosomal subunit protein uS12m
(3)
Small ribosomal subunit protein uS5m
(3)
5'-R(*UP*UP*UP*U)-3'
(2)
A-SITE MESSENGER RNA FRAGMENT CGGG
(2)
A-Site Messenger RNA
(2)
ANTICODON STEM-LOOP OF PHENYLALANINE TRANSFER RNA
(2)
ASL-tRNA
(2)
Anticodon tRNA
(2)
CHCH domain-containing protein
(2)
Ribosome-binding factor PSRP1, chloroplastic
(2)
Small ribosomal subunit protein bS18c
(2)
Small ribosomal subunit protein bS18m
(2)
Small ribosomal subunit protein bS1m
(2)
Small ribosomal subunit protein bS21c
(2)
Small ribosomal subunit protein bS21m
(2)
Small ribosomal subunit protein bS6c alpha
(2)
Small ribosomal subunit protein bS6m
(2)
Small ribosomal subunit protein bTHXc
(2)
Small ribosomal subunit protein cS22
(2)
Small ribosomal subunit protein cS23
(2)
Small ribosomal subunit protein mS22
(2)
Small ribosomal subunit protein mS23
(2)
Small ribosomal subunit protein mS27
(2)
Small ribosomal subunit protein mS34
(2)
Small ribosomal subunit protein mS35
(2)
Small ribosomal subunit protein uS11c
(2)
Small ribosomal subunit protein uS11m
(2)
Small ribosomal subunit protein uS12cz/uS12cy
(2)
Small ribosomal subunit protein uS14c
(2)
Small ribosomal subunit protein uS14m
(2)
Small ribosomal subunit protein uS15c
(2)
Small ribosomal subunit protein uS15m
(2)
Small ribosomal subunit protein uS17c
(2)
Small ribosomal subunit protein uS17m
(2)
Small ribosomal subunit protein uS19c
(2)
Small ribosomal subunit protein uS2c
(2)
Small ribosomal subunit protein uS2m
(2)
Small ribosomal subunit protein uS3c
(2)
Small ribosomal subunit protein uS3m
(2)
Small ribosomal subunit protein uS4c
(2)
Small ribosomal subunit protein uS5c
(2)
Small ribosomal subunit protein uS7cz/uS7cy
(2)
Small ribosomal subunit protein uS7m
(2)
Small ribosomal subunit protein uS8c
(2)
Small ribosomal subunit protein uS9c
(2)
Small ribosomal subunit protein uS9m
(2)
Translation initiation factor IF-1
(2)
Translation initiation factor IF-3
(2)
Translation initiation factor IF-3, mitochondrial
(2)
tRNA ASL human Lys3
(2)
tRNA ASL human mitochondrial Met
(2)
16S rRNA (adenine(1408)-N(1))-methyltransferase
(1)
28S ribosomal RNA, mitochondria
(1)
28S ribosomal RNA, mitochondrial
(1)
30S Ribosomal protein S14
(1)
 
More...
 
Interacting ligands  (6)
MG : MAGNESIUM ION
(11)
NMY : NEOMYCIN
(2)
GOL : GLYCEROL
(1)
K : POTASSIUM ION
(1)
PAR : PAROMOMYCIN
(1)
ZN : ZINC ION
(1)
 
Function and Biology
Biological function  (2)
structural constituent of ribosome
(100)
rRNA binding
(1)
 
Biological process  (2)
translation
(100)
mitochondrial translation
(4)
 
Biological cell component  (8)
ribosome
(100)
cytoplasm
(99)
ribonucleoprotein complex
(99)
small ribosomal subunit
(97)
mitochondrion
(4)
chloroplast
(2)
mitochondrial inner membrane
(2)
mitochondrial small ribosomal subunit
(2)
 
Sequence and Structure classification
SCOP fold  (2)
Ribosomal protein S16
(25)
Ribosome and ribosomal fragments
(7)
 
SCOP family  (2)
Ribosomal protein S16
(25)
Ribosome complexes
(7)
 
CATH class  (1)
Alpha Beta
(100)
 
CATH topology  (1)
S16 Ribosomal Protein; Chain: A;
(100)
 
Pfam accession / name  (1)
PF00886 : Ribosomal_S16
(99)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(92)
 
Diffraction radiation source type  (2)
Synchrotron
(91)
Free-electron laser
(1)
 
Diffraction source  (14)
APS BEAMLINE 24-ID-C
(33)
ESRF BEAMLINE ID14-4
(26)
SLS BEAMLINE X06SA
(9)
APS BEAMLINE 19-ID
(5)
DIAMOND BEAMLINE I04
(4)
NSLS BEAMLINE X25
(4)
SSRL BEAMLINE BL12-2
(4)
APS BEAMLINE 24-ID-E
(3)
ESRF BEAMLINE ID29
(2)
SLS BEAMLINE X10SA
(2)
EMBL/DESY, HAMBURG BEAMLINE BW7B
(1)
ESRF BEAMLINE ID14-2
(1)
MPG/DESY, HAMBURG BEAMLINE BW6
(1)
SLAC LCLS BEAMLINE CXI
(1)
 
Synchrotron site  (9)
APS
(41)
ESRF
(29)
SLS
(11)
Diamond
(4)
NSLS
(4)
SSRL
(4)
EMBL/DESY, Hamburg
(1)
MPG/DESY, HAMBURG
(1)
SLAC LCLS
(1)
 
Diffraction detector type  (3)
CCD
(76)
Pixel
(13)
Image plate
(1)
 
Refinement software  (3)
PHENIX
(50)
CNS
(37)
REFMAC
(6)
 
EM microscope model  (2)
FEI TITAN KRIOS
(5)
FEI POLARA 300
(2)
 
EM detector name  (3)
FEI FALCON II (4k x 4k)
(3)
GATAN K2 SUMMIT (4k x 4k)
(2)
OTHER
(2)
 
NMR
NMR software packages  (3)
ANSIG
(1)
VNMR
(1)
X-PLOR
(1)
 
NMR Field Strength
400.0 - 500
(1)
500.0 - 600
(1)
600.0 - 700
(1)
700.0 - 800
(1)
800.0 - 900
(1)
 
Representative Structures
Representative Structures
100%
95%
90%
70%
50%
40%
30%
...
Entries 1 to 10 of 100
Entries 1 to 10 of 100
 Select all entries on this page
Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit-Class-II
Sharma M, Koripella R, Agrawal R
iScience (2019) [PMID: 30677741  ]
Source organisms: Bos taurus  , Homo sapiens  
Assembly composition: RNA/protein complex
PDBe complex ID: PDB-CPX-249542 (Preferred)   search this ID
PDBe-KB: P82915    P82917    P82649    Q2KI62    Q29RU1    P82925    (view 25 more)
Electron Microscopy
3.32Å resolution
Released: 27 Feb 2019
Model geometry
Fit model/data
Data not analysed
6neq
6neq
6neq
Structure of human mitochondrial translation initiation factor 3 bound to the small ribosomal subunit -Class I
Sharma M, Koripella R, Agrawal R
iScience (2019) [PMID: 30677741  ]
Source organisms: Bos taurus  , Homo sapiens  
Assembly composition: RNA/protein complex
PDBe complex ID: PDB-CPX-249542 (Preferred)   search this ID
PDBe-KB: P82915    P82917    P82649    Q2KI62    Q29RU1    P82925    (view 25 more)
Electron Microscopy
3.48Å resolution
Released: 27 Feb 2019
Model geometry
Fit model/data
Data not analysed
6nf8
6nf8
6nf8
Crystal structure of the Thermus thermophilus 30S ribosomal subunit
Kaminishi T, Wang H, Kawazoe M, Ishii R, Schluenzen F, Hanawa-Suetsugu K, Wilson DN, Nomura M, Takemoto C, Shirouzu M, Fucini P, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Thermus thermophilus  
Assembly composition: RNA/protein complex
Bound ligands: ZN    ZN   
Assembly name: 30S ribosome (Preferred)   search this complex
PDBe complex ID: PDB-CPX-250089 (Preferred)   search this ID
PDBe-KB: Q5SJH3    P80376    Q5SLQ0    P80373    P80374    P80380    (view 14 more)
X-ray diffraction
3.3Å resolution
Released: 14 Apr 2009
Model geometry
Fit model/data
2zm6
2zm6
2zm6
Structure of the small subunit of the mammalian mitoribosome
Greber BJ, Bieri P, Leibundgut M, Leitner A, Aebersold R, Boehringer D, Ban N
Science (2015) [PMID: 25837512  ]
Source organism: Sus scrofa  
Assembly composition: RNA/protein complex
Bound ligands: GDP    MG    ZN    ZN    MG    GDP   
Modified residues: P5P    Y5P    Y5P    P5P   
PDBe complex ID: PDB-CPX-249438 (Preferred)   search this ID
PDBe-KB: A0A0M3KL59    F1RUU2    F1S001    A0A8D1UDM1    A0A0M3KL52    A0A0M3KL53    (view 14 more)
Electron Microscopy
3.6Å resolution
Released: 22 Apr 2015
Model geometry
Fit model/data
Data not analysed
5aj3
5aj3
5aj3
Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8)
Demirci H, Murphy IV F, Belardinelli R, Kelley AC, Ramakrishnan V, Gregory ST, Dahlberg AE, Jogl G
RNA (2010) [PMID: 20962038  ]
Assembly composition: RNA/protein complex
Bound ligands: K    MG    K    ZN    ZN    MG   
Assembly name: 30S ribosome (Preferred)   search this complex
PDBe complex ID: PDB-CPX-250089 (Preferred)   search this ID
PDBe-KB: Q5SJH3    P80376    Q5SLQ0    P80373    P80374    P80380    (view 14 more)
X-ray diffraction
3.69Å resolution
Released: 29 Sep 2010
Model geometry
Fit model/data
3oto
3oto
3oto
Crystal structure of the 30S ribosomal subunit from Thermus thermophilus in complex with the GE81112 peptide antibiotic
Schedlbauer A, Kaminishi T, Ochoa-Lizarralde B, Chieko N, Masahito K, Takemoto C, Yokoyama S, Connell SR, Fucini P
Proc Natl Acad Sci U S A (2016) [PMID: 27071098  ]
Assembly composition: RNA/protein complex
Bound ligands: MG    ZN    ZN    MG    6EK    6EK   
Assembly name: 30S ribosome (Preferred)   search this complex
PDBe complex ID: PDB-CPX-143885 (Preferred)   search this ID
PDBe-KB: Q5SJH3    P80376    Q5SLQ0    P80373    P80374    P80380    (view 14 more)
X-ray diffraction
3.5Å resolution
Released: 27 Apr 2016
Model geometry
Fit model/data
5iwa
5iwa
5iwa
Ambient-temperature crystal structure of 30S ribosomal subunit from Thermus thermophilus in complex with paromomycin
Sierra RG, Gati C, Laksmono H, Dao EH, Gul S, Fuller F, Kern J, Chatterjee R, Ibrahim M, Brewster A, Young ID, Michels-Clark T, Aquila A, Mengning L, Hunter MS, Koglin JE, Boutet S, Junco EA, Hayes B, Bogan MJ, Hampton CY, Puglisi EV, Sauter NK, Stan CA, Zouni A, Yano J, Yachandra VK, Soltis SM, Puglisi JD, DeMirci H
To be published
Assembly composition: RNA/protein complex
Bound ligands: MG    ZN    ZN    MG    PAR    PAR   
Modified residues: M2G    0TD    4OC    4OC    5MC    M2G    G7M    0TD    5MC    G7M    UR3    2MG    MA6    2MG    PSU    PSU    MA6    UR3   
Assembly name: 30S ribosome (Preferred)   search this complex
PDBe complex ID: PDB-CPX-250089 (Preferred)   search this ID
PDBe-KB: Q5SJH3    P80376    Q5SLQ0    P80373    P80374    P80380    (view 14 more)
X-ray diffraction
3.4Å resolution
Released: 18 Nov 2015
Model geometry
Fit model/data
Data not analysed
5br8
5br8
5br8
Structure of the 30S small subunit of chloroplast ribosome from spinach
Ahmed T, Shi J, Bhushan S
Nucleic Acids Res (2017) [PMID: 28582576  ]
Source organism: Spinacia oleracea  
Assembly composition: RNA/protein complex
PDBe complex ID: PDB-CPX-110670 (Preferred)   search this ID
PDBe-KB: P28807    P82130    P19954    P82403    P06507    P06508    (view 19 more)
Electron Microscopy
3.7Å resolution
Released: 7 Jun 2017
Model geometry
Fit model/data
Data not analysed
5x8r
5x8r
5x8r
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, A914G
Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G
To be published
Assembly composition: RNA/protein complex
Bound ligands: MG    ZN    ZN    MG   
Modified residues: M2G    0TD    4OC    4OC    5MC    M2G    0TD    5MC    UR3    2MG    MA6    7MG    2MG    7MG    PSU    PSU    MA6    UR3   
Assembly name: 30S ribosome (Preferred)   search this complex
PDBe complex ID: PDB-CPX-250089 (Preferred)   search this ID
PDBe-KB: Q5SJH3    P80376    Q5SLQ0    P80373    P80374    P80380    (view 14 more)
X-ray diffraction
3.651Å resolution
Released: 27 Feb 2013
Model geometry
Fit model/data
4dv4
4dv4
4dv4
Crystal structure of the Thermus thermophilus 30S ribosomal subunit with a 16S rRNA mutation, U13C, bound with streptomycin
Demirci H, Murphy IV F, Murphy E, Gregory ST, Dahlberg AE, Jogl G
To be published
Assembly composition: RNA/protein complex
Bound ligands: MG    SRY    ZN    ZN    MG    SRY   
Modified residues: M2G    0TD    4OC    4OC    5MC    M2G    0TD    5MC    UR3    2MG    MA6    7MG    2MG    7MG    PSU    PSU    MA6    UR3   
Assembly name: 30S ribosome (Preferred)   search this complex
PDBe complex ID: PDB-CPX-250089 (Preferred)   search this ID
PDBe-KB: Q5SJH3    P80376    Q5SLQ0    P80373    P80374    P80380    (view 14 more)
X-ray diffraction
3.651Å resolution
Released: 27 Feb 2013
Model geometry
Fit model/data
4duz
4duz
4duz
...
Entries 1 to 10 of 100
Entries 1 to 10 of 100