All structure family : VKOR domain
 
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Entry Information
Entry status  (1)
REL
(3)
 
Experimental methods  (1)
X-ray diffraction
(3)
 
Authors  (10)
Li W
(3)
Cheng W
(2)
Fowle Grider R
(2)
Liu S
(2)
Shen G
(2)
Beckwith J
(1)
Boyd D
(1)
Dutton RJ
(1)
Rapoport TA
(1)
Schulman S
(1)
 
Homo / hetero assembly  (1)
homo
(3)
 
Assembly composition  (1)
protein structure
(3)
 
Assembly polymer count  (1)
monomer
(3)
 
Resolution distribution
2.5 - 3
(1)
3.5 - 4
(2)
 
Release year distribution
2005 - 2010
(1)
2010 - 2015
(3)
 
Journal  (2)
Nat Commun
(2)
Nature
(1)
 
Macromolecules
Organism superkingdom  (1)
Bacteria
(3)
 
Organism name  (1)
Synechococcus sp. JA-2-3B'a(2-13)
(3)
 
Molecule name  (2)
VKOR
(3)
Vitamin K epoxide reductase homolog
(3)
 
Molecule type  (1)
Protein
(3)
 
Gene names  (1)
CYB_2278
(3)
 
Interacting ligands  (2)
U10 : UBIQUINONE-10
(3)
HG : MERCURY (II) ION
(1)
 
Function and Biology
Biological function  (2)
oxidoreductase activity
(3)
quinone binding
(3)
 
Biological cell component  (1)
membrane
(3)
 
Sequence and Structure classification
CATH class  (2)
Alpha Beta
(3)
Mainly Alpha
(3)
 
CATH topology  (2)
Glutaredoxin
(3)
de novo design (two linked rop proteins)
(3)
 
Pfam accession / name  (1)
PF07884 : VKOR
(3)
 
Representative Structures
Representative Structures
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Entries 1 to 3 of 3
Entries 1 to 3 of 3
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C50A mutant of Synechococcus VKOR, C2221 crystal form
Liu S, Cheng W, Fowle Grider R, Shen G, Li W
Nat Commun (2014) [PMID: 24477003  ]
Assembly composition: protein only structure
Bound ligands: U10    U10   
Assembly name: Vitamin K epoxide reductase homolog (Preferred)   search this complex
PDBe complex ID: PDB-CPX-173664 (Preferred)   search this ID
PDBe-KB: Q2JJF6   
X-ray diffraction
3.61Å resolution
Released: 12 Feb 2014
Model geometry
Fit model/data
4nv2
4nv2
4nv2
Structure of a bacterial homolog of vitamin K epoxide reductase
Li W, Schulman S, Dutton RJ, Boyd D, Beckwith J, Rapoport TA
Nature (2010) [PMID: 20110994  ]
Assembly composition: protein only structure
Bound ligands: U10    HG    HG    U10   
Assembly name: Vitamin K epoxide reductase homolog (Preferred)   search this complex
PDBe complex ID: PDB-CPX-173664 (Preferred)   search this ID
PDBe-KB: Q2JJF6   
X-ray diffraction
3.6Å resolution
Released: 9 Feb 2010
Model geometry
Fit model/data
3kp9
3kp9
3kp9
C50A mutant of Synechococcus VKOR, C2 crystal form (dehydrated)
Liu S, Cheng W, Fowle Grider R, Shen G, Li W
Nat Commun (2014) [PMID: 24477003  ]
Assembly composition: protein only structure
Bound ligands: U10    U10   
Assembly name: Vitamin K epoxide reductase homolog (Preferred)   search this complex
PDBe complex ID: PDB-CPX-173664 (Preferred)   search this ID
PDBe-KB: Q2JJF6   
X-ray diffraction
2.79Å resolution
Released: 12 Feb 2014
Model geometry
Fit model/data
4nv5
4nv5
4nv5
Entries 1 to 3 of 3
Entries 1 to 3 of 3