Aggregated Views of Proteins
Probable mitochondrial-processing peptidase subunit beta, mitochondrial (Q42290)
Annotations
This section shows residue-level functional annotations available for the PDB entries related to this protein. These annotations are contributed by members of the PDBe-KB consortium or generated by weekly data pipelines. For more information see the PDBe-KB Wiki pages.
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Annotated Residues
The visualisation is using UniProt numbering for residues, not PDB numbering.
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| Predicted ligand binding sites | |
| Biophysical parameters | |
| Domains | |
| Ligand binding sites | |
| Interaction interfaces | |
Predicted ligand binding sites
P2Rank is a new open source software package for ligand binding site prediction from protein structure
Biophysical parameters
POPSCOMP is a method to analyse interactions between individual complex components of proteins and/or nucleic acids by calculating the solvent accessible surface area (SASA) buried upon complex formation.
POPSCOMP is a method to analyse interactions between individual complex components of proteins and/or nucleic acids by calculating the solvent accessible surface area (SASA) buried upon complex formation.
POPSCOMP is a method to analyse interactions between individual complex components of proteins and/or nucleic acids by calculating the solvent accessible surface area (SASA) buried upon complex formation.
Domains
Residues mapped to InterPro domains
Ligand binding sites
Residues binding CARDIOLIPIN<br><span style="display:inline-block;width:100%;text-align:center;margin-top:5px;"><img src="https://www.ebi.ac.uk/pdbe/static/files/pdbechem_v2/CDL_200.svg" /><span>
Residues binding (1S)-2-{[{[(2R)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL STEARATE<br><span style="display:inline-block;width:100%;text-align:center;margin-top:5px;"><img src="https://www.ebi.ac.uk/pdbe/static/files/pdbechem_v2/PGT_200.svg" /><span>
Residues binding ZINC ION<br><span style="display:inline-block;width:100%;text-align:center;margin-top:5px;"><img src="https://www.ebi.ac.uk/pdbe/static/files/pdbechem_v2/ZN_200.svg" /><span>
Residues binding PHOSPHATIDYLETHANOLAMINE<br><span style="display:inline-block;width:100%;text-align:center;margin-top:5px;"><img src="https://www.ebi.ac.uk/pdbe/static/files/pdbechem_v2/PTY_200.svg" /><span>
Residues binding (7S)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSAN-1-AMINIUM 4-OXIDE<br><span style="display:inline-block;width:100%;text-align:center;margin-top:5px;"><img src="https://www.ebi.ac.uk/pdbe/static/files/pdbechem_v2/PC7_200.svg" /><span>
Interaction interfaces
Residues interacting with Probable mitochondrial-processing peptidase subunit alpha-1, mitochondrial (Q9ZU25)
Residues interacting with Cytochrome b-c1 complex subunit Rieske-1, mitochondrial (Q94JS0)
Residues interacting with Cytochrome b-c1 complex subunit 7-2, mitochondrial (F4JWS8)
Residues interacting with Cytochrome b-c1 complex subunit 8-1, mitochondrial (Q9SG91)
Residues interacting with Cytochrome b (P42792)
Residues interacting with NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 9 (Q945M1)
Residues interacting with Cytochrome b-c1 complex subunit 10, mitochondrial (Q94K78)
Residues interacting with Cytochrome c1 2, heme protein, mitochondrial (Q9FKS5)
Residues interacting with Cytochrome b-c1 complex subunit 9, mitochondrial (Q9LXJ2)
Sequence conservation
Amino acid probabilities
The amino acid probabilities are calculated using HMM profiles based on multiple sequence alignments. Click to see more details...
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Amino acid properties
Aromatic
Polar
Hydrophobic
Negative charge
Proline
Positive charge
Cysteine
Glycine
Variants
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Predicted annotations
Domains :
InterPro annotations