superfamily
View {link.id} in {link.name}
Ribosomal protein S5 domain 2-like
SCOP ID: 3000100
Families [ 15 entries ]
diverged from the GHMP Kinase family, lost the ATP-binding site
duplication, there are two structural repeats of this fold, each repeat is elaborated with additional structures forming the active site
SCOP ID 4000954Structure Viewer
SCOP ID 4001260Structure Viewer
related to the DNA gyrase/MutL family, contains extra C-terminal alpha/beta subdomain
duplication, there are two structural repeats of this fold
contains extra C-terminal alpha/beta subdomain
modification of the common fold, contains extra alpha-beta unit after strand 2, the extra strand is inserted between strands 3 and 4
modification of the common fold, contains extra alpha-beta unit after strand 2, the extra strand extends beta-sheet antiparallel to strand 3
SCOP ID 4005022Structure Viewer
partly overlaps with PF16897; an insert into G-domain rather than C-terminal extension; lacks the N-terminal strand of the superfamily fold
PF01768
region of PF10150
Domains [ 128 entries ]
ID
Region
Protein30S ribosomal protein S5
SpeciesThermus thermophilus HB8
74-154
Representative domain 8044015Structure Viewer
Represented structures [ 529 ]
E:74-154
Protein30S ribosomal protein S9
SpeciesThermus thermophilus HB8
2-128
Representative domain 8037678Structure Viewer
Represented structures [ 522 ]
I:2-128
Protein30S ribosomal protein S9
SpeciesEscherichia coli K-12
2-130
Representative domain 8082661Structure Viewer
Represented structures [ 299 ]
SI:1-129
Protein40S ribosomal protein S16-A
SpeciesSaccharomyces cerevisiae S288C
2-143
Representative domain 8103366Structure Viewer
Represented structures [ 151 ]
c6:2-143
ProteinLon protease homolog, mitochondrial
SpeciesHomo sapiens
755-953
Representative domain 8075401Structure Viewer
Represented structures [ 115 ]
C:755-953
ProteinGalactokinase
SpeciesHomo sapiens
2-216
Representative domain 8043715Structure Viewer
Represented structures [ 79 ]
A:2-216
Protein40S ribosomal protein S16
SpeciesHomo sapiens
1-146
Representative domain 8082685Structure Viewer
Represented structures [ 69 ]
SQ:1-146
ProteinExosome complex component Rrp42
SpeciesSaccharolobus solfataricus P2
1-191
Representative domain 8034673Structure Viewer
Represented structures [ 55 ]
A:1-191
ProteinExosome complex component Rrp41
SpeciesSaccharolobus solfataricus P2
8-155
Representative domain 8034677Structure Viewer
Represented structures [ 55 ]
B:8-155
Protein30S ribosomal protein S9
SpeciesThermus thermophilus HB27
2-128
Representative domain 8093728Structure Viewer
Represented structures [ 53 ]
AS09:2-128
ProteinUncharacterized protein
SpeciesOryctolagus cuniculus
34-172
Representative domain 8082683Structure Viewer
Represented structures [ 48 ]
Q:8-146
ProteinElongation factor 2
SpeciesSaccharomyces cerevisiae S288C
561-725
Representative domain 8043947Structure Viewer
Represented structures [ 44 ]
A:561-725
ProteinUDP-3-O-acyl-N-acetylglucosamine deacetylase
SpeciesAquifex aeolicus VF5
2-121
Representative domain 8034593Structure Viewer
Represented structures [ 31 ]
A:2-127
ProteinUDP-3-O-acyl-N-acetylglucosamine deacetylase
SpeciesAquifex aeolicus VF5
122-268
Representative domain 8034594Structure Viewer
Represented structures [ 31 ]
A:128-280
Protein30S ribosomal protein S9
SpeciesMycoplasma pneumoniae M129
4-131
Representative domain 8107610Structure Viewer
Represented structures [ 27 ]
H:4-131
ProteinArchaeal Lon protease
SpeciesArchaeoglobus fulgidus DSM 4304
418-614
Representative domain 8075403Structure Viewer
Represented structures [ 26 ]
C:418-614
ProteinDNA mismatch repair protein MutL
SpeciesEscherichia coli K-12
217-331
Representative domain 8034438Structure Viewer
Represented structures [ 23 ]
A:217-331
ProteinEndoplasmin
SpeciesCanis lupus familiaris
370-477
Representative domain 8056854Structure Viewer
Represented structures [ 20 ]
A:370-477
ProteinType 2 DNA topoisomerase 6 subunit B
SpeciesSaccharolobus shibatae
333-470
Representative domain 8003724Structure Viewer
Represented structures [ 18 ]
A:333-470
ProteinLon protease
SpeciesEscherichia coli K-12
594-775
Representative domain 8040879Structure Viewer
Represented structures [ 17 ]
A:594-775
Protein30S ribosomal protein S9
SpeciesEscherichia coli
3-130
Representative domain 8097396Structure Viewer
Represented structures [ 16 ]
AI:3-130
ProteinRibonuclease E
SpeciesEscherichia coli K-12
119-202
Representative domain 8102249Structure Viewer
Represented structures [ 16 ]
L:119-202
ProteinImidazoleglycerol-phosphate dehydratase 1, chloroplastic
SpeciesArabidopsis thaliana
73-158
Representative domain 8040422Structure Viewer
Represented structures [ 15 ]
A:10-95
ProteinImidazoleglycerol-phosphate dehydratase 1, chloroplastic
SpeciesArabidopsis thaliana
159-255
Representative domain 8040425Structure Viewer
Represented structures [ 15 ]
A:96-192
ProteinHomoserine kinase
SpeciesMethanocaldococcus jannaschii DSM 2661
1-163
Representative domain 8032983Structure Viewer
Represented structures [ 13 ]
C:5-167
ProteinDNA gyrase subunit B
SpeciesEscherichia coli K-12
221-392
Representative domain 8034440Structure Viewer
Represented structures [ 13 ]
A:221-392
ProteinMismatch repair endonuclease PMS2
SpeciesHomo sapiens
232-365
Representative domain 8036342Structure Viewer
Represented structures [ 13 ]
A:232-365
ProteinRibonuclease PH
SpeciesBacillus subtilis subsp. subtilis str. 168
1-151
Representative domain 8037932Structure Viewer
Represented structures [ 12 ]
A:1-151
ProteinElongation factor G
SpeciesThermus thermophilus
479-599
Representative domain 8038317Structure Viewer
Represented structures [ 12 ]
A:479-599
ProteinExosome complex component Rrp41
SpeciesArchaeoglobus fulgidus DSM 4304
10-153
Representative domain 8033518Structure Viewer
Represented structures [ 11 ]
D:10-153
ProteinExosome complex component Rrp42
SpeciesArchaeoglobus fulgidus DSM 4304
3-178
Representative domain 8033526Structure Viewer
Represented structures [ 11 ]
G:3-178
ProteinATP-dependent molecular chaperone HSP82
SpeciesSaccharomyces cerevisiae S288C
304-409
Representative domain 8042005Structure Viewer
Represented structures [ 11 ]
A:304-409
Protein40S ribosomal protein S16
SpeciesKluyveromyces lactis NRRL Y-1140
3-143
Representative domain 8082695Structure Viewer
Represented structures [ 11 ]
Q:3-143
ProteinRibonuclease P protein component
SpeciesThermotoga maritima MSB8
9-117
Representative domain 8033750Structure Viewer
Represented structures [ 10 ]
A:9-117
Protein30S ribosomal protein S9
SpeciesAcinetobacter baumannii
2-128
Representative domain 8095449Structure Viewer
Represented structures [ 10 ]
i:2-128
Protein30S ribosomal protein S9
SpeciesEnterococcus faecalis
3-130
Representative domain 8096496Structure Viewer
Represented structures [ 10 ]
i:3-130
Protein5,6,7,8-tetrahydromethanopterin hydro-lyase
SpeciesMethylorubrum extorquens AM1
2-169
Representative domain 8044280Structure Viewer
Represented structures [ 9 ]
A:2-169
ProteinStructural polyprotein
SpeciesInfectious pancreatic necrosis virus
514-716
Representative domain 8053555Structure Viewer
Represented structures [ 9 ]
A:514-716
ProteinGalactokinase
SpeciesPyrococcus furiosus DSM 3638
5-180
Representative domain 8041331Structure Viewer
Represented structures [ 8 ]
A:5-180
Protein30S ribosomal protein S9
SpeciesBacillus subtilis subsp. subtilis str. 168
1-130
Representative domain 8082667Structure Viewer
Represented structures [ 8 ]
AI:1-130
Protein30S ribosomal protein S9
SpeciesStaphylococcus aureus subsp. aureus NCTC 8325
6-132
Representative domain 8082669Structure Viewer
Represented structures [ 8 ]
SH:6-132
Protein40S ribosomal protein S16-like protein
SpeciesChaetomium thermophilum var. thermophilum DSM 1495
3-128
Representative domain 8097794Structure Viewer
Represented structures [ 8 ]
Cj:3-128
Protein30S ribosomal protein S9
SpeciesMycolicibacterium smegmatis MC2 155
25-150
Representative domain 8082671Structure Viewer
Represented structures [ 7 ]
I:25-150
Protein30S ribosomal protein S9
SpeciesMycobacterium tuberculosis H37Rv
25-151
Representative domain 8106248Structure Viewer
Represented structures [ 7 ]
i:25-151
ProteinPhosphomevalonate kinase
SpeciesStreptococcus pneumoniae R6
1-194
Representative domain 8040027Structure Viewer
Represented structures [ 6 ]
A:1-194
ProteinStructural polyprotein
SpeciesYellowtail ascites virus - Y-6
515-716
Representative domain 8053556Structure Viewer
Represented structures [ 6 ]
A:515-716
Protein30S ribosomal protein S9
SpeciesEscherichia coli S88
4-130
Representative domain 8082663Structure Viewer
Represented structures [ 6 ]
I:3-129
Protein30S ribosomal protein S9
SpeciesStaphylococcus aureus
4-130
Representative domain 8095367Structure Viewer
Represented structures [ 6 ]
i:6-132
ProteinImidazoleglycerol-phosphate dehydratase
SpeciesStaphylococcus aureus subsp. aureus N315
1-84
Representative domain 8036918Structure Viewer
Represented structures [ 5 ]
A:1-84
ProteinImidazoleglycerol-phosphate dehydratase
SpeciesStaphylococcus aureus subsp. aureus N315
85-179
Representative domain 8036920Structure Viewer
Represented structures [ 5 ]
A:85-179
ProteinDNA topoisomerase 2
SpeciesSaccharomyces cerevisiae S288C
246-406
Representative domain 8039160Structure Viewer
Represented structures [ 5 ]
A:246-406
Protein30S ribosomal protein S9, chloroplastic
SpeciesSpinacia oleracea
82-208
Representative domain 8082673Structure Viewer
Represented structures [ 5 ]
AI:71-197
ProteinRibosomal 40S subunit protein S16A
SpeciesCandida albicans SC5314
2-141
Representative domain 8107476Structure Viewer
Represented structures [ 4 ]
R:2-141
ProteinRibonuclease P protein component
SpeciesStaphylococcus aureus
1-117
Representative domain 8034436Structure Viewer
Represented structures [ 3 ]
A:1-117
ProteinExosome complex component RRP46
SpeciesHomo sapiens
25-146
Representative domain 8034785Structure Viewer
Represented structures [ 3 ]
D:25-146
ProteinExosome complex component RRP42
SpeciesHomo sapiens
5-191
Representative domain 8034788Structure Viewer
Represented structures [ 3 ]
E:5-191
ProteinExosome complex component RRP45
SpeciesHomo sapiens
1-184
Representative domain 8034791Structure Viewer
Represented structures [ 3 ]
A:1-184
ProteinExosome complex component MTR3
SpeciesHomo sapiens
29-175
Representative domain 8034792Structure Viewer
Represented structures [ 3 ]
F:29-175
ProteinExosome complex component RRP41
SpeciesHomo sapiens
7-151
Representative domain 8034796Structure Viewer
Represented structures [ 3 ]
B:6-150
ProteinExosome complex component RRP43
SpeciesHomo sapiens
7-187
Representative domain 8034801Structure Viewer
Represented structures [ 3 ]
C:7-187
ProteinRibonuclease PH
SpeciesAquifex aeolicus VF5
2-150
Representative domain 8041726Structure Viewer
Represented structures [ 3 ]
A:2-150
Protein40S ribosomal protein S16, putative
SpeciesPlasmodium falciparum 3D7
6-143
Representative domain 8082679Structure Viewer
Represented structures [ 3 ]
M:6-143
Protein40S ribosomal protein rpS16e
SpeciesTetrahymena thermophila
3-145
Representative domain 8082693Structure Viewer
Represented structures [ 3 ]
AI:3-145
Protein40S ribosomal protein S16
SpeciesDrosophila melanogaster
1-148
Representative domain 8082697Structure Viewer
Represented structures [ 3 ]
AQ:1-148
Protein30S ribosomal protein S9
SpeciesPseudomonas aeruginosa
3-128
Representative domain 8095363Structure Viewer
Represented structures [ 3 ]
i:3-128
Protein40S ribosomal protein S16
SpeciesMus musculus
3-146
Representative domain 8105786Structure Viewer
Represented structures [ 3 ]
y2:3-146
Protein30S ribosomal protein S5
SpeciesGeobacillus stearothermophilus
78-148
Representative domain 8034422Structure Viewer
Represented structures [ 2 ]
A:78-148
ProteinDNA gyrase subunit B
SpeciesThermus thermophilus HB8
219-390
Representative domain 8040314Structure Viewer
Represented structures [ 2 ]
A:221-392
Protein30S ribosomal protein S9
SpeciesPyrococcus furiosus DSM 3638
1-135
Representative domain 8082675Structure Viewer
Represented structures [ 2 ]
AK:1-135
Protein30S ribosomal protein S9
SpeciesThermococcus kodakarensis KOD1
2-134
Representative domain 8099656Structure Viewer
Represented structures [ 2 ]
Al:2-134
Protein30S ribosomal protein S9
SpeciesPyrococcus abyssi GE5
2-135
Representative domain 8100690Structure Viewer
Represented structures [ 2 ]
K:2-135
ProteinRibosome-interacting GTPase 1
SpeciesSaccharomyces cerevisiae S288C
178-238
Representative domain 8019369Structure Viewer
Represented structures [ 1 ]
A:178-238
ProteinXO lethal protein 1
SpeciesCaenorhabditis elegans
8-181
Representative domain 8032845Structure Viewer
Represented structures [ 1 ]
B:14-187
ProteinElongation factor G (EF-G-2)
SpeciesThermus thermophilus HB8
448-562
Representative domain 8033825Structure Viewer
Represented structures [ 1 ]
A:455-569
ProteinRibonuclease P protein component
SpeciesBacillus subtilis subsp. subtilis str. 168
1-111
Representative domain 8034434Structure Viewer
Represented structures [ 1 ]
A:4-114
ProteinPolyribonucleotide nucleotidyltransferase
SpeciesStreptomyces antibioticus
3-151
Representative domain 8034444Structure Viewer
Represented structures [ 1 ]
A:3-151
ProteinPolyribonucleotide nucleotidyltransferase
SpeciesStreptomyces antibioticus
346-482
Representative domain 8034446Structure Viewer
Represented structures [ 1 ]
A:346-482
ProteinMevalonate kinase
SpeciesRattus norvegicus
1-225
Representative domain 8036575Structure Viewer
Represented structures [ 1 ]
A:1-225
Protein4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
SpeciesEscherichia coli CFT073
1-163
Representative domain 8037515Structure Viewer
Represented structures [ 1 ]
A:1-163
ProteinRibonuclease PH
SpeciesPseudomonas aeruginosa PAO1
1-151
Representative domain 8040402Structure Viewer
Represented structures [ 1 ]
A:1-151
ProteinMevalonate kinase
SpeciesMethanocaldococcus jannaschii DSM 2661
1-175
Representative domain 8040412Structure Viewer
Represented structures [ 1 ]
A:6-180
ProteinImidazoleglycerol-phosphate dehydratase
SpeciesCryptococcus neoformans var. neoformans JEC21
2-93
Representative domain 8040652Structure Viewer
Represented structures [ 1 ]
A:2-93
ProteinImidazoleglycerol-phosphate dehydratase
SpeciesCryptococcus neoformans var. neoformans JEC21
94-187
Representative domain 8040654Structure Viewer
Represented structures [ 1 ]
A:94-187
ProteinDNA topoisomerase 4 subunit B
SpeciesEscherichia coli K-12
218-383
Representative domain 8041211Structure Viewer
Represented structures [ 1 ]
A:1218-1383
ProteinArchaeal Lon protease
SpeciesMethanocaldococcus jannaschii DSM 2661
456-640
Representative domain 8043903Structure Viewer
Represented structures [ 1 ]
A:456-640
ProteinStructural polyprotein
SpeciesBlotched snakehead virus
559-769
Representative domain 8053557Structure Viewer
Represented structures [ 1 ]
A:559-769
Protein30S ribosomal protein S9
SpeciesAcinetobacter baumannii ATCC 19606 = CIP 70.34 = JCM 6841
2-128
Representative domain 8097538Structure Viewer
Represented structures [ 1 ]
j:2-128
Protein40S ribosomal protein S16
SpeciesSus scrofa
6-146
Representative domain 8099258Structure Viewer
Represented structures [ 1 ]
SQ:6-146
Protein40S ribosomal protein S16
SpeciesBos taurus
5-146
Representative domain 8099418Structure Viewer
Represented structures [ 1 ]
QQ:5-146
Protein40S ribosomal protein S16, putative
SpeciesTrypanosoma cruzi strain CL Brener
10-149
Representative domain 8099470Structure Viewer
Represented structures [ 1 ]
r:10-149
Protein30S ribosomal protein S9
SpeciesEnterococcus faecalis V583
3-130
Representative domain 8103418Structure Viewer
Represented structures [ 1 ]
i:3-130
Protein30S ribosomal protein S9
SpeciesBacillus subtilis
1-130
Representative domain 8106746Structure Viewer
Represented structures [ 1 ]
n:1-130
ProteinRibosomal protein S16
SpeciesGiardia lamblia ATCC 50803
24-158
Representative domain 8107184Structure Viewer
Represented structures [ 1 ]
Q1:24-158
Protein30S ribosomal protein S9
SpeciesEscherichia coli CFT073
4-130
Representative domain 8107588Structure Viewer
Represented structures [ 1 ]
DI:3-129
ProteinDiphosphomevalonate decarboxylase
SpeciesSaccharomyces cerevisiae S288C
3-190
Protein4-diphosphocytidyl-2-C-methyl-D-erythritol kinase
SpeciesThermus thermophilus HB8
1-148
ProteinIMPACT family member YigZ
SpeciesEscherichia coli K-12
1-134
ProteinGalactokinase
SpeciesLactococcus lactis subsp. lactis Il1403
9-213
ProteinUncharacterized protein
SpeciesThermus thermophilus HB8
2-124
ProteinStructural polyprotein
SpeciesTellina virus 1
637-830
ProteinStructural polyprotein
SpeciesInfectious pancreatic necrosis virus
524-711
ProteinRibonuclease P protein component
SpeciesEscherichia coli K-12
1-119
Protein30S ribosomal protein S9
SpeciesLactococcus lactis subsp. cremoris MG1363
2-130
Protein40S ribosomal protein S16, putative
SpeciesTrichomonas vaginalis
2-140
ProteinRibosomal protein RPS16
SpeciesToxoplasma gondii VEG
72-211
ProteinUS9
SpeciesLachancea kluyveri
1-141
Protein
SpeciesEscherichia coli 2-005-03_S4_C3
4-129
Protein
SpeciesEscherichia coli MS 69-1
4-130
Protein30S ribosomal protein S9
SpeciesEscherichia coli MS 21-1
4-130
Protein30S ribosomal protein S9, mitochondrial
SpeciesArabidopsis thaliana
306-428
Protein
SpeciesEscherichia coli UMEA 3718-1
4-130
Protein30S ribosomal protein S9
SpeciesMycobacterium tuberculosis
25-151
Protein30S ribosomal protein S9
SpeciesStaphylococcus schweitzeri
6-132
Protein40S ribosomal protein S16
SpeciesPlasmodium falciparum Dd2
6-143
Protein30S ribosomal protein S9
SpeciesThermococcus celer Vu 13 = JCM 8558
1-132
Protein30S ribosomal protein S9
SpeciesFlavobacterium johnsoniae
4-128
ProteinRibonuclease E
SpeciesCaulobacter vibrioides CB15
176-261
Protein30S ribosomal protein S9
SpeciesListeria monocytogenes EGD-e
5-130
ProteinRps16 protein
SpeciesMus musculus
32-172
Protein30S ribosomal protein S9
SpeciesAcinetobacter baumannii AB0057
3-126
Protein
SpeciesSaccharomyces cerevisiae
3-143
Protein40S ribosomal protein S16
SpeciesNeurospora crassa OR74A
4-142
Protein
SpeciesEscherichia coli O157
4-130
Protein40S RIBOSOMAL PROTEIN S16
SpeciesEncephalitozoon cuniculi GB-M1
5-145
Protein30S ribosomal protein S9
SpeciesEscherichia coli BL21(DE3)
4-130
Protein30S ribosomal protein S9
SpeciesEscherichia coli H420
4-130
ProteinUncharacterized protein
SpeciesSolanum lycopersicum
8-147