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superfamily
Sm-like ribonucleoproteins
family
Sm motif of small nuclear ribonucleoproteins, SNRNP
SCOP ID
: 4001809
forms homo and heteroheptameric ring structures
Function
function unknown or not yet annotated
Show ancestry
%0
1000001
class 1000001
All beta proteins
2000308
fold 2000308
Sm-like fold
1000001->2000308
3000419
superfamily 3000419
Sm-like ribonucleoproteins
2000308->3000419
4001809
family 4001809
Sm motif of small nuclear ribonucleoproteins, SNRNP
3000419->4001809
Domains
[ 56 entries ]
ID
Region
Links
Protein
Small nuclear ribonucleoprotein Sm D1
Species
Homo sapiens
P62314
2-81
UniProt
Representative domain 8029369
Represented structures [ 98 ]
1B34
A:2-81
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein Sm D2
Species
Homo sapiens
P62316
26-118
UniProt
Representative domain 8029370
Represented structures [ 98 ]
1B34
B:26-118
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein G
Species
Homo sapiens
P62308
10-72
UniProt
Representative domain 8063467
Represented structures [ 97 ]
5XJQ
G:10-72
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein F
Species
Homo sapiens
P62306
2-75
UniProt
Representative domain 8063451
Represented structures [ 95 ]
3PGW
I:2-75
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein E
Species
Homo sapiens
P62304
1-89
UniProt
Representative domain 8063475
Represented structures [ 95 ]
3PGW
H:1-89
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein Sm D3
Species
Homo sapiens
P62318
4-75
UniProt
Representative domain 8029372
Represented structures [ 78 ]
1D3B
A:4-75
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein F
Species
Saccharomyces cerevisiae S288C
P54999
19-86
UniProt
Representative domain 8031325
Represented structures [ 76 ]
1N9R
A:19-86
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein-associated proteins B and B
Species
Homo sapiens
P14678
7-87
UniProt
Representative domain 8029368
Represented structures [ 74 ]
1D3B
B:7-87
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein G
Species
Saccharomyces cerevisiae S288C
P40204
2-76
UniProt
Representative domain 8098667
Represented structures [ 57 ]
6J6H
j:2-76
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein Sm D2
Species
Saccharomyces cerevisiae S288C
Q06217
17-108
UniProt
Representative domain 8063489
Represented structures [ 55 ]
5ZWM
R:17-108
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein-associated protein B
Species
Saccharomyces cerevisiae S288C
P40018
6-102
UniProt
Representative domain 8077612
Represented structures [ 55 ]
5WSG
F:6-102
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein Sm D1
Species
Saccharomyces cerevisiae S288C
Q02260
1-109
UniProt
Representative domain 8082630
Represented structures [ 55 ]
3JCM
P:1-109
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein Sm D3
Species
Saccharomyces cerevisiae S288C
P43321
3-95
UniProt
Representative domain 8098693
Represented structures [ 55 ]
6G90
d:3-95
PDBe
RCSB PDB
Protein
Putative snRNP Sm-like protein
Species
Methanothermobacter thermautotrophicus str. Delta H
O26745
8-81
UniProt
Representative domain 8031164
Represented structures [ 48 ]
1MGQ
A:8-81
PDBe
RCSB PDB
Protein
Putative snRNP Sm-like protein
Species
Archaeoglobus fulgidus DSM 4304
O29386
3-74
UniProt
Representative domain 8021264
Represented structures [ 41 ]
1I4K
A:3-74
PDBe
RCSB PDB
Protein
Putative snRNP Sm-like protein
Species
Pyrococcus abyssi GE5
Q9V0Y8
3-73
UniProt
Representative domain 8030043
Represented structures [ 41 ]
1H64
A:3-73
PDBe
RCSB PDB
Protein
Putative snRNP Sm-like protein
Species
Methanococcus vannielii SB
A6UPF5
2-72
UniProt
Representative domain 8063439
Represented structures [ 41 ]
5MKI
H:2-72
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein homolog (Sm-like)
Species
Pyrobaculum aerophilum str. IM2
Q8ZVU2
12-137
UniProt
Representative domain 8020311
Represented structures [ 27 ]
1M5Q
A:12-137
PDBe
RCSB PDB
Protein
Sm ribonucleo
Species
Sulfolobus acidocaldarius
A0A0U3FHU0
4-82
UniProt
Representative domain 8063449
Represented structures [ 27 ]
5MKL
A4:4-82
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm3
Species
Saccharomyces cerevisiae S288C
P57743
1-79
UniProt
Representative domain 8063445
Represented structures [ 24 ]
4C8Q
C:1-79
PDBe
RCSB PDB
Protein
Probable U6 snRNA-associated Sm-like protein LSm3
Species
Schizosaccharomyces pombe 972h-
Q9Y7M4
9-93
UniProt
Representative domain 8063453
Represented structures [ 19 ]
4EMG
A:9-93
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm5
Species
Saccharomyces cerevisiae S288C
P40089
6-84
UniProt
Representative domain 8063463
Represented structures [ 18 ]
4M75
E:6-84
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm7
Species
Saccharomyces cerevisiae S288C
P53905
26-105
UniProt
Representative domain 8063497
Represented structures [ 18 ]
4M7A
F:26-105
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm6
Species
Saccharomyces cerevisiae S288C
Q06406
10-86
UniProt
Representative domain 8099109
Represented structures [ 16 ]
5VSU
F:10-86
PDBe
RCSB PDB
Protein
Putative snRNP Sm-like protein
Species
Saccharolobus solfataricus P2
Q97ZQ0
1-76
UniProt
Representative domain 8020150
Represented structures [ 13 ]
1TH7
A:3-78
PDBe
RCSB PDB
Protein
Putative snRNP Sm-like protein
Species
Pyrobaculum aerophilum str. IM2
Q8ZYG5
10-80
UniProt
Representative domain 8021402
Represented structures [ 13 ]
1I8F
A:10-80
PDBe
RCSB PDB
Protein
RNA-binding protein Lsm
Species
Halobacterium salinarum R1
B0R5R2
1-60
UniProt
Representative domain 8102055
Represented structures [ 13 ]
6TFL
M:1-60
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm6
Species
Schizosaccharomyces pombe 972h-
Q9UUI1
3-73
UniProt
Representative domain 8063459
Represented structures [ 10 ]
3SWN
B:3-73
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm5
Species
Schizosaccharomyces pombe 972h-
O42978
6-77
UniProt
Representative domain 8063479
Represented structures [ 10 ]
3SWN
S:6-77
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm6
Species
Homo sapiens
P62312
7-76
UniProt
Representative domain 8063441
Represented structures [ 6 ]
3JCR
6:7-76
PDBe
RCSB PDB
Protein
Like-Sm ribonucleoprotein core
Species
Saccharolobus solfataricus 98/2
D0KRQ0
4-82
UniProt
Representative domain 8063447
Represented structures [ 6 ]
4XQ3
D:4-82
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm3
Species
Homo sapiens
P62310
16-98
UniProt
Representative domain 8063455
Represented structures [ 6 ]
3JCR
3:16-98
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm7
Species
Homo sapiens
Q9UK45
11-89
UniProt
Representative domain 8063465
Represented structures [ 6 ]
3JCR
7:11-89
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm5
Species
Homo sapiens
Q9Y4Y9
10-85
UniProt
Representative domain 8063471
Represented structures [ 6 ]
3JCR
5:10-85
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm4
Species
Homo sapiens
Q9Y4Z0
1-80
UniProt
Representative domain 8063487
Represented structures [ 6 ]
3JCR
4:1-80
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm8
Species
Homo sapiens
O95777
4-73
UniProt
Representative domain 8063491
Represented structures [ 6 ]
3JCR
8:4-73
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm2
Species
Schizosaccharomyces pombe 972h-
O94408
1-94
UniProt
Representative domain 8098249
Represented structures [ 5 ]
6PPP
B:1-94
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm5 (Fragment)
Species
Cryptosporidium parvum Iowa II
Q5CXX3
25-113
UniProt
Representative domain 8029052
Represented structures [ 1 ]
3PGG
A:25-113
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein F
Species
Schizosaccharomyces pombe 972h-
O59734
4-78
UniProt
Representative domain 8063443
Represented structures [ 1 ]
3JB9
I:4-78
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein G
Species
Schizosaccharomyces pombe 972h-
O74966
3-75
UniProt
Representative domain 8063461
Represented structures [ 1 ]
3JB9
J:3-75
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein G
Species
Mus musculus
P62309
7-74
UniProt
Representative domain 8063469
Represented structures [ 1 ]
4F7U
G:5007-5074
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein E
Species
Mus musculus
P62305
14-91
UniProt
Representative domain 8063477
Represented structures [ 1 ]
4F7U
H:3014-3091
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein Sm D2
Species
Schizosaccharomyces pombe 972h-
O14036
19-115
UniProt
Representative domain 8063883
Represented structures [ 1 ]
3JB9
G:19-115
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein Sm D3
Species
Schizosaccharomyces pombe 972h-
Q9UUC6
2-81
UniProt
Representative domain 8082632
Represented structures [ 1 ]
3JB9
Z:2-81
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm1
Species
Schizosaccharomyces pombe 972h-
P87173
15-83
UniProt
Representative domain 8094197
Represented structures [ 1 ]
6PPQ
A:15-83
PDBe
RCSB PDB
Protein
U6 snRNA-associated Sm-like protein LSm6
Species
Saccharomyces cerevisiae YJM789
A6ZYX7
10-84
UniProt
Representative domain 8097145
Represented structures [ 1 ]
6ASO
F:10-84
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein Sm D1
Species
Schizosaccharomyces pombe 972h-
O42661
1-82
UniProt
Representative domain 8098159
Represented structures [ 1 ]
3JB9
f:1-82
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein Sm D1
Species
Mus musculus
P62315
1-82
UniProt
Representative domain 8098845
Represented structures [ 1 ]
4F7U
A:1001-1082
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein F
Species
Xenopus laevis
P62321
3-76
UniProt
Representative domain 8098847
Represented structures [ 1 ]
4F7U
I:4003-4076
PDBe
RCSB PDB
Protein
SMB1 isoform 1
Species
Saccharomyces cerevisiae
A0A6A5Q0I3
6-102
UniProt
Representative domain 8102618
Represented structures [ 1 ]
7DCO
h:6-102
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein Sm D3
Species
Saccharomyces cerevisiae
A0A6A5Q3H8
4-84
UniProt
Representative domain 8102624
Represented structures [ 1 ]
7DCO
l:4-84
PDBe
RCSB PDB
Protein
Sm protein F
Species
Saccharomyces cerevisiae
A0A6A5Q5K4
12-83
UniProt
Representative domain 8102626
Represented structures [ 1 ]
7DCO
j:12-83
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein E
Species
Saccharomyces cerevisiae
A0A6A5Q895
10-92
UniProt
Representative domain 8102628
Represented structures [ 1 ]
7DCO
i:10-92
PDBe
RCSB PDB
Protein
SnRNP, putative
Species
Archaeoglobus fulgidus DSM 4304
O29885
1-73
UniProt
Representative domain 8028942
1LJO
A:3-75
PDBe
RCSB PDB
Protein
Small nuclear ribonucleoprotein-associated protein
Species
Homo sapiens
Q66K91
6-91
UniProt
Representative domain 8102185
7B0Y
j:6-91
PDBe
RCSB PDB
Protein
Species
Saccharomyces cerevisiae
A0A6L0ZK95
20-110
UniProt
Representative domain 8102634
7DCO
c:20-110
PDBe
RCSB PDB