Filter by :
Entry Information
Entry status
(1)
Experimental methods
(1)
X-ray diffraction
(15)
Authors
(60)
Nakamura T
(11)
Nishi N
(11)
Kato R
(8)
Wakatsuki S
(7)
Nagae M
(6)
Hirashima M
(5)
Kamitori S
(5)
Yoshida H
(5)
Murata T
(4)
Nakakita S
(4)
Teraoka M
(4)
Usui T
(4)
Andre S
(2)
André S
(2)
Buzamet E
(2)
Canada FJ
(2)
Cañada FJ
(2)
Gabius HJ
(2)
Haroske G
(2)
Hirabayashi J
(2)
Jimenez-Barbero J
(2)
Jiménez-Barbero J
(2)
Kaltner H
(2)
Kloor M
(2)
Kopitz J
(2)
Lensch M
(2)
Lohr M
(2)
Lopez-Merino L
(2)
López-Merino L
(2)
Mate MJ
(2)
Maté MJ
(2)
Menendez M
(2)
Menéndez M
(2)
Nakamura-Tsuruta S
(2)
Ribeiro JP
(2)
Romero A
(2)
Ruiz FM
(2)
Saiz JL
(2)
Solis D
(2)
Solís D
(2)
Sáiz JL
(2)
Wollina U
(2)
Ando H
(1)
Imamura A
(1)
Ishida H
(1)
Kishishita S
(1)
Kiso M
(1)
Komura N
(1)
Kuwabara N
(1)
Makyio H
(1)
Menjo M
(1)
Murayama K
(1)
Nishino A
(1)
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
(1)
Shirouzu M
(1)
Suzuki T
(1)
Terada T
(1)
Wada K
(1)
Yamada Y
(1)
Yokoyama S
(1)
Homo / hetero assembly
(1)
homo
(15)
Assembly composition
(1)
protein structure
(15)
Assembly polymer count
(2)
monomer
(14)
trimer
(1)
Resolution distribution
1.0 - 1.5
(3)
1.5 - 2
(8)
2.0 - 2.5
(3)
2.5 - 3
(1)
Release year distribution
2005 - 2010
(13)
2010 - 2015
(8)
2015 - 2020
(1)
Journal
(7)
Glycobiology
(4)
J Biol Chem
(4)
Int J Biochem Cell Biol
(2)
J Mol Biol
(2)
Biochem Biophys Res Commun
(1)
Bioorg Med Chem
(1)
To be published
(1)
Macromolecules
Organism superkingdom
(1)
Eukaryota
(15)
Organism name
(1)
Homo sapiens
(15)
Molecule name
(4)
Ecalectin
(15)
Gal-9
(15)
Galectin-9
(15)
Tumor antigen HOM-HD-21
(15)
Molecule type
(1)
Protein
(15)
Gene names
(1)
LGALS9
(15)
Interacting ligands
(18)
GAL : beta-D-galactopyranose
(12)
NAG : 2-acetamido-2-deoxy-beta-D-glucopyranose
(5)
NI : NICKEL (II) ION
(4)
BGC : beta-D-glucopyranose
(3)
GLC : alpha-D-glucopyranose
(2)
NDG : 2-acetamido-2-deoxy-alpha-D-glucopyranose
(2)
PRD_900004 : beta-lactose
(2)
PRD_900008 : alpha-lactose
(2)
PRD_900019 : N-acetyl-alpha-lactosamine
(2)
A2G : 2-acetamido-2-deoxy-alpha-D-galactopyranose
(1)
DTV : (2S,3S)-1,4-DIMERCAPTOBUTANE-2,3-DIOL
(1)
EDO : 1,2-ETHANEDIOL
(1)
GOL : GLYCEROL
(1)
LSE : 2-(trimethylsilyl)ethyl 4-O-beta-D-galactopyranosyl-6-Se-methyl-6-seleno-beta-D-glucopyranoside
(1)
MAN : alpha-D-mannopyranose
(1)
NGA : 2-acetamido-2-deoxy-beta-D-galactopyranose
(1)
SIA : N-acetyl-alpha-neuraminic acid
(1)
ZN : ZINC ION
(1)
Function and Biology
Biological function
(1)
carbohydrate binding
(15)
Sequence and Structure classification
CATH class
(1)
Mainly Beta
(15)
CATH topology
(1)
Jelly Rolls
(15)
Pfam accession / name
(1)
PF00337 : Gal-bind_lectin
(15)
Experimental Information
Diffraction protocol
(1)
Single wavelength
(15)
Diffraction radiation source type
(1)
Synchrotron
(15)
Diffraction source
(6)
PHOTON FACTORY BEAMLINE AR-NW12A
(6)
PHOTON FACTORY BEAMLINE BL-5A
(4)
ESRF BEAMLINE BM16
(2)
PHOTON FACTORY BEAMLINE AR-NE3A
(1)
PHOTON FACTORY BEAMLINE BL-17A
(1)
SPRING-8 BEAMLINE BL26B2
(1)
Synchrotron site
(3)
Photon Factory
(12)
ESRF
(2)
SPring-8
(1)
Diffraction detector type
(1)
CCD
(15)
Refinement software
(2)
REFMAC
(9)
CNS
(6)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
Entries 1 to 10 of 15
Select all entries on this page
Crystal Structure of a protease-resistant mutant form of human galectin-9
Yoshida H, Kamitori S
Biochem Biophys Res Commun
(2017)
[PMID: 28687490 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Carbohydrate polymer components:
Molecule 1 -
BGC(1), GAL(1)
Molecule 2 -
GAL(1), GLC(1)
Assembly name:
Galectin-9
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-126137 (Preferred)
search this ID
N-Domain of human adhesion/growth-regulatory galectin-9
Ruiz FM, Romero A
Int J Biochem Cell Biol
(2010)
[PMID: 20227520 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Galectin-9
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-126137 (Preferred)
search this ID

Crystal Structure of human galectin-9 NCRD with Selenolactose
Makyio H, Suzuki T, Ando H, Yamada Y, Ishida H, Kiso M, Wakatsuki S, Kato R
Bioorg Med Chem
(2014)
[PMID: 24631362 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Galectin-9
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-126137 (Preferred)
search this ID

Crystal structure of human galectin-9 C-terminal CRD
Yoshida H, Kamitori S
J Biol Chem
(2010)
[PMID: 20861009 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Assembly name:
Galectin-9
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-126137 (Preferred)
search this ID

Crystal structure of human galectin-9 N-terminal CRD in complex with N-acetyllactosamine dimer (crystal 1)
Nagae M, Nishi N, Murata T, Usui T, Nakamura T, Wakatsuki S, Kato R
Glycobiology
(2009)
[PMID: 18977853 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Carbohydrate polymer components:
Molecule 1 -
GAL(2), NAG(2)
Assembly name:
Galectin-9
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-126137 (Preferred)
search this ID

Crystal structure of N-terminal domain of human galectin-9 containing L-acetyllactosamine
Kishishita S, Nishino A, Murayama K, Terada T, Shirouzu M, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Homo sapiens
Assembly composition: protein only structure
Carbohydrate polymer components:
Molecule 1 -
GAL(1), NDG(1)
Assembly name:
Galectin-9
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-126137 (Preferred)
search this ID

Crystal structure of human galectin-9 N-terminal CRD in complex with N-acetyllactosamine trimer (crystal 2)
Nagae M, Nishi N, Murata T, Usui T, Nakamura T, Wakatsuki S, Kato R
Glycobiology
(2009)
[PMID: 18977853 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Bound ligands:
RPN
Carbohydrate polymer components:
Molecule 1 -
GAL(3), NAG(3)
Assembly name:
Galectin-9
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-126137 (Preferred)
search this ID

Crystal structure of human galectin-9 N-terminal CRD in complex with N-acetyllactosamine dimer (crystal 2)
Nagae M, Nishi N, Murata T, Usui T, Nakamura T, Wakatsuki S, Kato R
Glycobiology
(2009)
[PMID: 18977853 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Carbohydrate polymer components:
Molecule 1 -
GAL(2), NAG(2)
Assembly name:
Galectin-9
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-126137 (Preferred)
search this ID

Crystal structure of human galectin-9 N-terminal CRD in complex with N-acetyllactosamine trimer (crystal 1)
Nagae M, Nishi N, Murata T, Usui T, Nakamura T, Wakatsuki S, Kato R
Glycobiology
(2009)
[PMID: 18977853 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Bound ligands:
RPN
Carbohydrate polymer components:
Molecule 1 -
GAL(3), NAG(3)
Molecule 2 -
GAL(3), NAG(2)
Molecule 3 -
GAL(2), NAG(2)
Assembly name:
Galectin-9
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-126137 (Preferred)
search this ID

N-Domain of human adhesion/growth-regulatory galectin-9 in complex with lactose
Ruiz FM, Romero A
Int J Biochem Cell Biol
(2010)
[PMID: 20227520 ]
Source organism: Homo sapiens
Assembly composition: protein only structure
Carbohydrate polymer components:
Molecule 1 -
BGC(1), GAL(1)
Assembly name:
Galectin-9
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-126137 (Preferred)
search this ID

Entries 1 to 10 of 15