Uniprot accession / id : O54788  OR   Uniprot accession / id : O76075  OR   Uniprot accession / id : J3KT26
 
Filter by :
Entry Information
Entry status  (1)
REL
(4)
 
Experimental methods  (2)
Solution NMR
(3)
X-ray diffraction
(1)
 
Authors  (27)
Nagata S
(2)
Otomo T
(2)
Sakahira H
(2)
Uegaki K
(2)
Yamazaki T
(2)
Han W-D
(1)
Han WD
(1)
Kim M-S
(1)
Kim MS
(1)
Kim Y-G
(1)
Kim YG
(1)
Kyogoku Y
(1)
Li P
(1)
Lugovskoy AA
(1)
McCarty JS
(1)
Oh B-H
(1)
Oh BH
(1)
Park S-Y
(1)
Park SY
(1)
Robinson H
(1)
Shimizu M
(1)
Shin S
(1)
Wagner G
(1)
Woo E-J
(1)
Woo EJ
(1)
Yumoto N
(1)
Zhou P
(1)
 
Homo / hetero assembly  (2)
hetero
(2)
homo
(2)
 
Assembly composition  (2)
protein structure
(2)
protein/protein complex
(2)
 
Assembly polymer count  (2)
dimer
(3)
monomer
(1)
 
Resolution distribution
2.5 - 3
(1)
 
Release year distribution
1995 - 2000
(2)
2000 - 2005
(4)
 
Journal  (4)
J Mol Biol
(1)
Mol Cell
(1)
Nat Struct Biol
(1)
Proc Natl Acad Sci U S A
(1)
 
Macromolecules
Organism superkingdom  (1)
Eukaryota
(4)
 
Organism name  (2)
Mus musculus
(3)
Homo sapiens
(1)
 
Molecule name  (8)
CAD
(4)
Caspase-activated DNase
(4)
Caspase-activated deoxyribonuclease
(4)
DFF-40
(4)
DNA fragmentation factor 40 kDa subunit
(4)
DNA fragmentation factor subunit beta
(4)
CPAN
(1)
Caspase-activated nuclease
(1)
 
Molecule type  (1)
Protein
(4)
 
Gene names  (6)
Cad
(3)
Dffb
(3)
CAD
(1)
DFF2
(1)
DFF40
(1)
DFFB
(1)
 
Interacting Molecules  (1)
DNA fragmentation factor subunit alpha
(2)
 
Interacting ligands  (3)
MG : MAGNESIUM ION
(1)
PB : LEAD (II) ION
(1)
ZN : ZINC ION
(1)
 
Function and Biology
Biological function  (10)
DNA endonuclease activity
(4)
DNA binding
(1)
DNA nuclease activity
(1)
disordered domain specific binding
(1)
enzyme binding
(1)
hydrolase activity
(1)
identical protein binding
(1)
nuclease activity
(1)
protein binding
(1)
protein domain specific binding
(1)
 
Biological process  (5)
apoptotic DNA fragmentation
(4)
apoptotic process
(4)
DNA catabolic process
(1)
apoptotic chromosome condensation
(1)
negative regulation of apoptotic DNA fragmentation
(1)
 
Biological cell component  (7)
chromatin
(1)
cytoplasm
(1)
cytosol
(1)
nucleolus
(1)
nucleoplasm
(1)
nucleus
(1)
protein-containing complex
(1)
 
Sequence and Structure classification
SCOP fold  (2)
beta-Grasp (ubiquitin-like)
(3)
His-Me finger endonucleases
(1)
 
SCOP family  (2)
CAD domain
(3)
Caspase-activated DNase, CAD (DffB, DFF40)
(1)
 
CATH class  (2)
Alpha Beta
(3)
Special
(1)
 
CATH topology  (2)
Ubiquitin-like (UB roll)
(3)
Helix Hairpins
(1)
 
Pfam accession / name  (2)
PF02017 : CIDE-N
(4)
PF09230 : DFF40
(1)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(1)
 
Diffraction radiation source type  (1)
Synchrotron
(1)
 
Diffraction source  (1)
NSLS BEAMLINE X12C
(1)
 
Synchrotron site  (1)
NSLS
(1)
 
Refinement software  (1)
CNS
(1)
 
NMR
NMR software packages  (4)
X-PLOR
(3)
DYANA
(1)
Felix
(1)
XEASY
(1)
 
NMR Field Strength
400.0 - 500
(3)
500.0 - 600
(3)
600.0 - 700
(2)
700.0 - 800
(2)
800.0 - 900
(1)
 
Representative Structures
Representative Structures
100%
95%
90%
70%
50%
40%
30%
Entries 1 to 4 of 4
Entries 1 to 4 of 4
 Select all entries on this page
NMR STRUCTURE OF DFF40 AND DFF45 N-TERMINAL DOMAIN COMPLEX
Zhou P, Lugovskoy AA, McCarty JS, Li P, Wagner G
Proc Natl Acad Sci U S A (2001) [PMID: 11371636  ]
Assembly composition: protein/protein complex
Assembly name: DNA fragmentation factor complex (Preferred)   search this complex
PDBe complex ID: PDB-CPX-126225 (Preferred)   search this ID
PDBe-KB: O76075    O76075    O00273   
Solution NMR
Released: 2 May 2001
Model geometry
Fit model/data
Data not deposited
1ibx
1ibx
1ibx
Crystal Structure of Caspase-activated DNase (CAD)
Woo E-J, Kim Y-G, Kim M-S, Han W-D, Shin S, Oh B-H
Mol Cell (2004) [PMID: 15149602  ]
Source organism: Mus musculus  
Assembly composition: protein only structure
Bound ligands: MG    ZN    PB    ZN    MG   
Assembly name: DNA fragmentation factor subunit beta (Preferred)   search this complex
PDBe complex ID: PDB-CPX-129509 (Preferred)   search this ID
PDBe-KB: O54788   
X-ray diffraction
2.6Å resolution
Released: 21 May 2004
Model geometry
Fit model/data
1v0d
1v0d
1v0d
NMR STRUCTURE OF THE HETERODIMERIC COMPLEX BETWEEN CAD DOMAINS OF CAD AND ICAD
Otomo T, Sakahira H, Uegaki K, Nagata S, Yamazaki T
Nat Struct Biol (2000) [PMID: 10932250  ]
Source organism: Mus musculus  
Assembly composition: protein/protein complex
Assembly name: DNA fragmentation factor (Preferred)   search this complex
PDBe complex ID: PDB-CPX-129507 (Preferred)   search this ID
PDBe-KB: O54788    O54786   
Solution NMR
Released: 8 Jun 2000
Model geometry
Data not analysed
Fit model/data
Data not analysed
1f2r
1f2r
1f2r
NMR STRUCTURE OF THE CAD DOMAIN OF CASPASE-ACTIVATED DNASE
Yamazaki T, Uegaki K
J Mol Biol (2000) [PMID: 10764577  ]
Source organism: Mus musculus  
Assembly composition: protein only structure
Assembly name: DNA fragmentation factor subunit beta (Preferred)   search this complex
PDBe complex ID: PDB-CPX-129508 (Preferred)   search this ID
PDBe-KB: O54788   
Solution NMR
Released: 16 Feb 2000
Model geometry
Fit model/data
Data not deposited
1c9f
1c9f
1c9f
Entries 1 to 4 of 4
Entries 1 to 4 of 4