Uniprot accession / id : P10923  OR   Uniprot accession / id : P10451  OR   Uniprot accession / id : A0A024RDE2
 
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Entry Information
Entry status  (1)
REL
(3)
 
Experimental methods  (1)
X-ray diffraction
(3)
 
Authors  (24)
Dai J
(2)
Ding J
(2)
Du J
(2)
Guo Y
(2)
Hou S
(2)
Lai Z
(2)
Wang H
(2)
Yang H
(2)
Zhang D
(2)
Zhong C
(2)
Alenfall J
(1)
Blom AM
(1)
Caing-Carlsson R
(1)
Chen Y
(1)
Duelli A
(1)
Duner P
(1)
Dunér P
(1)
Gialeli C
(1)
Liang C
(1)
Nilsson AH
(1)
Nilsson J
(1)
Shen J
(1)
Walse B
(1)
Zibert JR
(1)
 
Homo / hetero assembly  (1)
hetero
(3)
 
Assembly composition  (1)
protein/protein complex
(3)
 
Assembly polymer count  (2)
trimer
(2)
dimer
(1)
 
Resolution distribution
1.5 - 2
(1)
2.5 - 3
(2)
 
Release year distribution
2005 - 2010
(2)
2020 - 2025
(1)
 
Journal  (2)
J Mol Biol
(2)
Pharmacol Res
(1)
 
Macromolecules
Organism superkingdom  (1)
Eukaryota
(3)
 
Organism name  (1)
Homo sapiens
(3)
 
Molecule name  (7)
Bone sialoprotein 1
(3)
Nephropontin
(3)
Osteopontin
(3)
SPP-1
(3)
Secreted phosphoprotein 1
(3)
Urinary stone protein
(3)
Uropontin
(3)
 
Molecule type  (1)
Protein
(3)
 
Gene names  (4)
BNSP
(3)
OPN
(3)
PSEC0156
(3)
SPP1
(3)
 
Interacting Molecules  (3)
Fab fragment of anti-osteopontin antibody 23C3, Heavy chain
(2)
Fab fragment of anti-osteopontin antibody 23C3, Light chain
(2)
Neuropilin-1
(1)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(3)
 
Diffraction radiation source type  (2)
Rotating anode
(2)
Synchrotron
(1)
 
Diffraction source  (2)
RIGAKU
(2)
DIAMOND BEAMLINE I04
(1)
 
Synchrotron site  (1)
Diamond
(1)
 
Diffraction detector type  (2)
Image plate
(2)
Pixel
(1)
 
Refinement software  (1)
REFMAC
(3)
 
Representative Structures
Representative Structures
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Entries 1 to 3 of 3
Entries 1 to 3 of 3
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Crystal Structure of the b1b2 domains from Human Neuropilin-1 in complex with a peptide.
Caing-Carlsson R, Duelli A, Walse B
Pharmacol Res (2024) [PMID: 38871237  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Assembly name: Neuropilin-1 and Osteopontin (Preferred)   search this complex
PDBe complex ID: PDB-CPX-275939 (Preferred)   search this ID
PDBe-KB: P10451    O14786   
X-ray diffraction
1.55Å resolution
Released: 26 Jun 2024
Model geometry
Fit model/data
9eou
9eou
9eou
Crystal structure of anti-osteopontin antibody 23C3 in complex with W43A mutated epitope peptide
Du J, Zhong C, Yang H, Ding J
J Mol Biol (2008) [PMID: 18694758  ]
Assembly composition: protein/protein complex
Carbohydrate polymer components:
Molecule 1 - BMA(1), MAN(1), NAG(2)
Assembly name: Osteopontin and IG-light kappa chain and IG-heavy chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-233978 (Preferred)   search this ID
PDBe-KB: P10451   
X-ray diffraction
2.8Å resolution
Released: 14 Oct 2008
Model geometry
Fit model/data
3dsf
3dsf
3dsf
Crystal structure of anti-osteopontin antibody 23C3 in complex with its epitope peptide
Du J, Yang H, Zhong C, Ding J
J Mol Biol (2008) [PMID: 18694758  ]
Assembly composition: protein/protein complex
Carbohydrate polymer components:
Molecule 1 - BMA(1), MAN(1), NAG(2)
Assembly name: Osteopontin and IG-light kappa chain and IG-heavy chain (Preferred)   search this complex
PDBe complex ID: PDB-CPX-233977 (Preferred)   search this ID
PDBe-KB: P10451   
X-ray diffraction
2.8Å resolution
Released: 14 Oct 2008
Model geometry
Fit model/data
3cxd
3cxd
3cxd
Entries 1 to 3 of 3
Entries 1 to 3 of 3