Uniprot accession / id : P29351  OR   Uniprot accession / id : P29350  OR   Uniprot accession / id : F5H1Z8
 
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Entry Information
Entry status  (1)
REL
(14)
 
Experimental methods  (2)
X-ray diffraction
(11)
Solution NMR
(3)
 
Authors  (40)
Alicea-Velazquez NL
(5)
Boggon TJ
(5)
Zhou GW
(4)
Alicea-Velázquez NL
(3)
Inoue M
(3)
Jakoncic J
(3)
Kigawa T
(3)
Koshiba S
(3)
Liang X
(3)
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
(3)
Yang J
(3)
Yokoyama S
(3)
Zhao ZJ
(3)
Kasai T
(2)
Liu L
(2)
Niu T
(2)
Sato M
(2)
Song X
(2)
Bellamy HD
(1)
Cheng W
(1)
Cheng Z
(1)
Hantschel O
(1)
Harada T
(1)
He D
(1)
Kobayashi N
(1)
Komma C
(1)
Mann G
(1)
Meng W
(1)
Mo Y
(1)
Motoda Y
(1)
Niu Z
(1)
Qi J
(1)
Shen Z
(1)
Tanaka A
(1)
Tochio N
(1)
Tomizawa T
(1)
Wang F
(1)
Wang W
(1)
Yuan Z
(1)
Zhao Z
(1)
 
Homo / hetero assembly  (2)
homo
(9)
hetero
(5)
 
Assembly composition  (2)
protein structure
(9)
protein/protein complex
(5)
 
Assembly polymer count  (2)
monomer
(9)
dimer
(5)
 
Resolution distribution
1.0 - 1.5
(2)
1.5 - 2
(4)
2.0 - 2.5
(2)
2.5 - 3
(2)
3.0 - 3.5
(1)
 
Release year distribution
1995 - 2000
(1)
2000 - 2005
(3)
2005 - 2010
(4)
2010 - 2015
(6)
2020 - 2025
(2)
 
Journal  (5)
To be published
(5)
J Biol Chem
(3)
J Struct Biol
(3)
Protein Pept Lett
(2)
J Cell Biochem
(1)
 
Macromolecules
Organism superkingdom  (1)
Eukaryota
(14)
 
Organism name  (1)
Homo sapiens
(14)
 
Molecule name  (6)
Hematopoietic cell protein-tyrosine phosphatase
(14)
PTP-1C
(14)
Protein-tyrosine phosphatase 1C
(14)
Protein-tyrosine phosphatase SHP-1
(14)
SH-PTP1
(14)
Tyrosine-protein phosphatase non-receptor type 6
(14)
 
Molecule type  (1)
Protein
(14)
 
Gene names  (3)
HCP
(14)
PTP1C
(14)
PTPN6
(14)
 
Interacting Molecules  (4)
NKG2-A/NKG2-B type II integral membrane protein
(2)
MbC (monobody targeting SHP1-C-SH2)
(1)
PEPTIDE PY469
(1)
Tyrosine-protein kinase JAK1
(1)
 
Interacting ligands  (3)
SO4 : SULFATE ION
(3)
PO4 : PHOSPHATE ION
(2)
EDO : 1,2-ETHANEDIOL
(1)
 
Function and Biology
EC number / name  (1)
3.1.3.48 : Protein-tyrosine-phosphatase
(14)
 
Biological function  (12)
protein tyrosine phosphatase activity
(10)
SH2 domain binding
(1)
SH3 domain binding
(1)
cell adhesion molecule binding
(1)
hydrolase activity
(1)
non-membrane spanning protein tyrosine phosphatase activity
(1)
phosphoprotein phosphatase activity
(1)
phosphorylation-dependent protein binding
(1)
phosphotyrosine residue binding
(1)
protein binding
(1)
protein kinase binding
(1)
transmembrane receptor protein tyrosine phosphatase activity
(1)
 
Biological process  (45)
dephosphorylation
(10)
protein dephosphorylation
(10)
B cell receptor signaling pathway
(1)
CD27 signaling pathway
(1)
G protein-coupled receptor signaling pathway
(1)
MAPK cascade
(1)
T cell activation
(1)
T cell costimulation
(1)
T cell proliferation
(1)
T cell receptor signaling pathway
(1)
cell differentiation
(1)
cytokine-mediated signaling pathway
(1)
epididymis development
(1)
hematopoietic progenitor cell differentiation
(1)
intracellular signal transduction
(1)
megakaryocyte development
(1)
mitotic cell cycle
(1)
natural killer cell mediated cytotoxicity
(1)
negative regulation of B cell receptor signaling pathway
(1)
negative regulation of MAPK cascade
(1)
negative regulation of T cell proliferation
(1)
negative regulation of T cell receptor signaling pathway
(1)
negative regulation of angiogenesis
(1)
negative regulation of cell population proliferation
(1)
negative regulation of humoral immune response mediated by circulating immunoglobulin
(1)
negative regulation of inflammatory response to wounding
(1)
negative regulation of innate immune response
(1)
negative regulation of interleukin-6 production
(1)
negative regulation of lipopolysaccharide-mediated signaling pathway
(1)
negative regulation of mast cell activation involved in immune response
(1)
negative regulation of neutrophil activation
(1)
negative regulation of tumor necrosis factor production
(1)
peptidyl-tyrosine dephosphorylation
(1)
peptidyl-tyrosine phosphorylation
(1)
platelet aggregation
(1)
platelet formation
(1)
positive regulation of cell adhesion mediated by integrin
(1)
positive regulation of cell population proliferation
(1)
positive regulation of phosphatidylinositol 3-kinase/protein kinase B signal transduction
(1)
regulation of B cell differentiation
(1)
regulation of ERK1 and ERK2 cascade
(1)
regulation of G1/S transition of mitotic cell cycle
(1)
regulation of apoptotic process
(1)
regulation of release of sequestered calcium ion into cytosol
(1)
regulation of type I interferon-mediated signaling pathway
(1)
 
Biological cell component  (14)
alpha-beta T cell receptor complex
(1)
cell-cell junction
(1)
cytoplasm
(1)
cytosol
(1)
extracellular exosome
(1)
extracellular region
(1)
membrane
(1)
nucleolus
(1)
nucleoplasm
(1)
nucleus
(1)
plasma membrane
(1)
protein-containing complex
(1)
specific granule lumen
(1)
tertiary granule lumen
(1)
 
Sequence and Structure classification
SCOP fold  (1)
(Phosphotyrosine protein) phosphatases II
(2)
 
SCOP family  (1)
Higher-molecular-weight phosphotyrosine protein phosphatases
(2)
 
CATH class  (1)
Alpha Beta
(12)
 
CATH topology  (2)
Protein-Tyrosine Phosphatase; Chain A
(9)
SHC Adaptor Protein
(5)
 
Pfam accession / name  (2)
PF00102 : Y_phosphatase
(10)
PF00017 : SH2
(6)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(10)
 
Diffraction radiation source type  (2)
Synchrotron
(9)
Rotating anode
(2)
 
Diffraction source  (9)
NSLS BEAMLINE X6A
(3)
APS BEAMLINE 24-ID-C
(1)
CAMD BEAMLINE GCPCC
(1)
CHESS BEAMLINE F1
(1)
CLSI BEAMLINE 08ID-1
(1)
NSLS BEAMLINE X25
(1)
RIGAKU RU300
(1)
RIGAKU RUH3R
(1)
SLS BEAMLINE X06DA
(1)
 
Synchrotron site  (6)
NSLS
(4)
APS
(1)
CAMD
(1)
CHESS
(1)
CLSI
(1)
SLS
(1)
 
Diffraction detector type  (3)
CCD
(4)
Pixel
(4)
Image plate
(2)
 
Refinement software  (4)
PHENIX
(6)
REFMAC
(2)
X-PLOR
(2)
CNS
(1)
 
NMR
NMR software packages  (5)
CYANA
(3)
KUJIRA
(3)
NMRPipe
(3)
NMRView
(3)
XwinNMR
(3)
 
NMR Field Strength
600.0 - 700
(1)
700.0 - 800
(3)
800.0 - 900
(3)
 
Representative Structures
Representative Structures
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Entries 1 to 10 of 14
Entries 1 to 10 of 14
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The Crystal Structure of SHP1 from Biortus.
Wang F, Cheng W, Yuan Z, Qi J, Shen Z
To be published
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: SO4    EDO   
Assembly name: Tyrosine-protein phosphatase non-receptor type 6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-151411 (Preferred)   search this ID
PDBe-KB: P29350   
X-ray diffraction
1.75Å resolution
Released: 13 Mar 2024
Model geometry
Fit model/data
8yhi
8yhi
8yhi
MbC/SHP1-C-SH2 complex
Mann G, Hantschel O
To be published
Assembly composition: protein/protein complex
Assembly name: Tyrosine-protein phosphatase non-receptor type 6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-151414 (Preferred)   search this ID
PDBe-KB: P29350   
X-ray diffraction
2.75Å resolution
Released: 13 Jan 2021
Model geometry
Fit model/data
6sm5
6sm5
6sm5
Solution structures of the SH2 domain of human protein-tyrosine phosphatase SHP-1
Sato M, Koshiba S, Inoue M, Kigawa T, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Tyrosine-protein phosphatase non-receptor type 6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-151411 (Preferred)   search this ID
PDBe-KB: P29350   
Solution NMR
Released: 17 Nov 2005
Model geometry
Fit model/data
Data not analysed
1x6c
1x6c
1x6c
CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE PROTEIN TYROSINE PHOSPHATASE SHP-1
Yang J, Liang X, Niu T, Meng W, Zhao Z, Zhou GW
J Biol Chem (1998) [PMID: 9774441  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Tyrosine-protein phosphatase non-receptor type 6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-151411 (Preferred)   search this ID
PDBe-KB: P29350   
X-ray diffraction
2.5Å resolution
Released: 22 Aug 1999
Model geometry
Fit model/data
Data not deposited
1gwz
1gwz
1gwz
Crystal structure of human tyrosine phosphatase SHP-1
Yang J, Liu L, He D, Song X, Liang X, Zhao ZJ, Zhou GW
J Biol Chem (2003) [PMID: 12482860  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Tyrosine-protein phosphatase non-receptor type 6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-151411 (Preferred)   search this ID
PDBe-KB: P29350   
X-ray diffraction
2.8Å resolution
Released: 25 Oct 2005
Model geometry
Fit model/data
Data not deposited
2b3o
2b3o
2b3o
Solution structure of the SHP-1 C-terminal SH2 domain complexed with a tyrosine-phosphorylated peptide from NKG2A
Kasai T, Koshiba S, Inoue M, Kigawa T, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Modified residues: PTR    PTR   
Assembly name: NKG2-A/NKG2-B type II integral membrane protein and Tyrosine-protein phosphatase non-receptor type 6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-150832 (Preferred)   search this ID
PDBe-KB: P29350    P26715   
Solution NMR
Released: 15 Apr 2008
Model geometry
Fit model/data
Data not deposited
2yu7
2yu7
2yu7
Crystal structure of SHP1 catalytic domain with JAK1 activation loop peptide
Alicea-Velazquez NL, Jakoncic J, Boggon TJ
J Struct Biol (2013) [PMID: 23296072  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Modified residues: FTY    FTY   
Assembly name: Tyrosine-protein phosphatase non-receptor type 6 and peptide (Preferred)   search this complex
PDBe complex ID: PDB-CPX-151413 (Preferred)   search this ID
PDBe-KB: P29350   
X-ray diffraction
1.7961Å resolution
Released: 19 Dec 2012
Model geometry
Fit model/data
4gs0
4gs0
4gs0
SHP-1 catalytic domain WPD loop open
Alicea-Velazquez NL, Boggon TJ
Protein Pept Lett (2013) [PMID: 23514039  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Tyrosine-protein phosphatase non-receptor type 6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-151411 (Preferred)   search this ID
PDBe-KB: P29350   
X-ray diffraction
1.3994Å resolution
Released: 3 Apr 2013
Model geometry
Fit model/data
4hjp
4hjp
4hjp
SHP-1 catalytic domain WPD loop closed
Alicea-Velazquez NL, Boggon TJ
Protein Pept Lett (2013) [PMID: 23514039  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: PO4   
Assembly name: Tyrosine-protein phosphatase non-receptor type 6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-151411 (Preferred)   search this ID
PDBe-KB: P29350   
X-ray diffraction
1.8013Å resolution
Released: 3 Apr 2013
Model geometry
Fit model/data
4hjq
4hjq
4hjq
Crystal structure of SHP1 catalytic domain with PO4
Alicea-Velazquez NL, Jakoncic J, Boggon TJ
J Struct Biol (2013) [PMID: 23296072  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: PO4   
Assembly name: Tyrosine-protein phosphatase non-receptor type 6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-151411 (Preferred)   search this ID
PDBe-KB: P29350   
X-ray diffraction
1.3732Å resolution
Released: 19 Dec 2012
Model geometry
Fit model/data
4grz
4grz
4grz
Entries 1 to 10 of 14
Entries 1 to 10 of 14