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Entry Information
Entry status
(1)
Experimental methods
(3)
Electron Microscopy
(124)
Solution NMR
(1)
X-ray diffraction
(1)
Authors
(391)
Beckmann R
(45)
Cheng J
(44)
Berninghausen O
(36)
Ameismeier M
(31)
Thoms M
(23)
Buschauer R
(18)
Denk T
(16)
Kratzat H
(15)
Becker T
(14)
Mackens-Kiani T
(14)
Li Y
(12)
Natchiar SK
(11)
Wang M
(10)
Frohlich T
(9)
Fröhlich T
(9)
Hayn M
(9)
Hirschenberger M
(9)
Kirchhoff F
(9)
Koepke L
(9)
Sparrer KMJ
(9)
Straub JH
(9)
Sturzel CM
(9)
Stürzel CM
(9)
Yokoyama T
(9)
Fischer N
(8)
Hurt E
(8)
Lau B
(8)
Li X
(8)
Montabana E
(8)
Myasnikov AG
(8)
Petrychenko V
(8)
Rodnina MV
(8)
Wei Z
(8)
Yi S-H
(8)
Yi SH
(8)
Yong X
(8)
Cate JHD
(7)
Chang ST
(7)
Dullea RG
(7)
Kutay U
(7)
Li W
(7)
Liras S
(7)
McClure KF
(7)
Shirouzu M
(7)
Ward FR
(7)
Altman RB
(6)
Ban N
(6)
Blanchard SC
(6)
Fraser CS
(6)
Holm M
(6)
Huang Z
(6)
Klaholz BP
(6)
Leibundgut M
(6)
Liedtke D
(6)
Natchiar KS
(6)
Peng BZ
(6)
Rundlet EJ
(6)
Sokabe M
(6)
Taunton J
(6)
Wang HY
(6)
Watson ZL
(6)
van den Heuvel J
(6)
Brito Querido J
(5)
Gordiyenko Y
(5)
Ramakrishnan V
(5)
Ye X
(5)
Zemp I
(5)
Akichika S
(4)
Best K
(4)
Green R
(4)
Irie T
(4)
Ishibashi K
(4)
Ishiguro K
(4)
Iwasaki S
(4)
Karousis ED
(4)
Ma D
(4)
Matsuzawa I
(4)
Mishima Y
(4)
Mito M
(4)
Muehlemann O
(4)
Muhlemann O
(4)
Mühlemann O
(4)
Saito H
(4)
Sakaguchi Y
(4)
Scaiola A
(4)
Schubert K
(4)
Suzuki T
(4)
Wakabayashi K
(4)
Zhao X
(4)
von Loeffelholz O
(4)
Artus-Revel CG
(3)
Bhaskar V
(3)
Bretones G
(3)
Cavadini S
(3)
Chao JA
(3)
Diaz-Lopez I
(3)
Díaz-López I
(3)
Fraser C
(3)
Gilbert W
(3)
Graff-Meyer A
(3)
More...
Homo / hetero assembly
(2)
hetero
(125)
homo
(1)
Assembly composition
(3)
RNA/protein complex
(124)
protein structure
(1)
protein/protein complex
(1)
Assembly polymer count
(35)
36-mer
(10)
37-mer
(10)
83-mer
(10)
35-mer
(9)
86-mer
(9)
85-mer
(8)
80-mer
(7)
81-mer
(7)
84-mer
(6)
38-mer
(5)
50-mer
(4)
51-mer
(4)
54-mer
(4)
34-mer
(3)
79-mer
(3)
82-mer
(3)
33-mer
(2)
53-mer
(2)
57-mer
(2)
78-mer
(2)
88-mer
(2)
171-mer
(1)
172-mer
(1)
22-mer
(1)
23-mer
(1)
26-mer
(1)
31-mer
(1)
48-mer
(1)
49-mer
(1)
52-mer
(1)
87-mer
(1)
89-mer
(1)
92-mer
(1)
dimer
(1)
monomer
(1)
Resolution distribution
1.5 - 2
(4)
2.0 - 2.5
(10)
2.5 - 3
(43)
3.0 - 3.5
(39)
3.5 - 4
(21)
4.0 - 4.5
(5)
4.5 - 5
(2)
6.0 - 6.5
(1)
Release year distribution
2010 - 2015
(6)
2015 - 2020
(53)
2020 - 2025
(99)
2025 - 2030
(8)
Journal
(18)
Nature
(26)
Nat Struct Mol Biol
(17)
Nat Commun
(12)
Nucleic Acids Res
(12)
Science
(12)
To be published
(9)
Mol Cell
(7)
Cell
(5)
EMBO J
(5)
Cell Rep
(4)
Cell Res
(3)
Elife
(3)
PLoS Biol
(3)
Cancer Discov
(2)
Front Mol Biosci
(2)
J Biochem
(2)
Nat Chem Biol
(1)
bioRxiv
(1)
Macromolecules
Organism superkingdom
(1)
Eukaryota
(126)
Organism name
(3)
Homo sapiens
(121)
Mus musculus
(4)
Oryctolagus cuniculus
(1)
Molecule name
(6)
40S ribosomal protein S30
(126)
Small ribosomal subunit protein eS30
(126)
Ubiquitin-like FUBI-ribosomal protein eS30 fusion protein
(126)
Ubiquitin-like protein FUBI
(126)
FAU ubiquitin like and ribosomal protein S30 fusion
(122)
FAU ubiquitin-like and ribosomal protein S30
(4)
Molecule type
(1)
Protein
(126)
Gene names
(2)
FAU
(122)
Fau
(4)
Interacting Molecules
(281)
Small ribosomal subunit protein eS1
(124)
Small ribosomal subunit protein eS6
(124)
Small ribosomal subunit protein eS7
(124)
Small ribosomal subunit protein eS8
(124)
Small ribosomal subunit protein uS15
(124)
Small ribosomal subunit protein uS4
(124)
Small ribosomal subunit protein uS8
(124)
Small ribosomal subunit protein uS17
(123)
Small ribosomal subunit protein eS24
(122)
Small ribosomal subunit protein uS11
(122)
Small ribosomal subunit protein eS27
(121)
Small ribosomal subunit protein eS28
(121)
Small ribosomal subunit protein uS7
(121)
Small ribosomal subunit protein eS19
(120)
Small ribosomal subunit protein eS25
(120)
Small ribosomal subunit protein uS13
(120)
Small ribosomal subunit protein uS19
(120)
Small ribosomal subunit protein uS2
(120)
Small ribosomal subunit protein uS9
(120)
Small ribosomal subunit protein eS21
(119)
Small ribosomal subunit protein uS5
(119)
Small ribosomal subunit protein eS17
(118)
Small ribosomal subunit protein uS12
(118)
Small ribosomal subunit protein eS4, X isoform
(115)
Small ribosomal subunit protein RACK1
(112)
Small ribosomal subunit protein uS14
(111)
Small ribosomal subunit protein uS3
(111)
Small ribosomal subunit protein eS10
(110)
Small ribosomal subunit protein uS10
(110)
Small ribosomal subunit protein eS12
(108)
18S Ribosomal RNA
(107)
Small ribosomal subunit protein eS26
(104)
Small ribosomal subunit protein eS32
(97)
Ubiquitin-ribosomal protein eS31 fusion protein
(84)
Large ribosomal subunit protein eL19
(63)
Large ribosomal subunit protein eL14
(62)
Large ribosomal subunit protein eL15
(62)
Large ribosomal subunit protein eL18
(62)
Large ribosomal subunit protein eL20
(62)
Large ribosomal subunit protein eL21
(62)
Large ribosomal subunit protein eL22
(62)
Large ribosomal subunit protein eL24
(62)
Large ribosomal subunit protein eL28
(62)
Large ribosomal subunit protein eL30
(62)
Large ribosomal subunit protein eL31
(62)
Large ribosomal subunit protein eL32
(62)
Large ribosomal subunit protein eL33
(62)
Large ribosomal subunit protein eL34
(62)
Large ribosomal subunit protein eL36
(62)
Large ribosomal subunit protein eL37
(62)
Large ribosomal subunit protein eL38
(62)
Large ribosomal subunit protein eL43
(62)
Large ribosomal subunit protein eL8
(62)
Large ribosomal subunit protein uL13
(62)
Large ribosomal subunit protein uL14
(62)
Large ribosomal subunit protein uL18
(62)
Large ribosomal subunit protein uL22
(62)
Large ribosomal subunit protein uL24
(62)
Large ribosomal subunit protein uL29
(62)
Large ribosomal subunit protein uL3
(62)
Large ribosomal subunit protein uL30
(62)
Large ribosomal subunit protein uL4
(62)
Large ribosomal subunit protein uL5
(62)
Large ribosomal subunit protein uL6
(62)
Large ribosomal subunit protein eL13
(61)
Large ribosomal subunit protein eL29
(61)
Large ribosomal subunit protein eL39
(61)
Large ribosomal subunit protein eL6
(61)
Large ribosomal subunit protein uL15
(61)
Large ribosomal subunit protein uL23
(61)
Large ribosomal subunit protein eL27
(60)
Large ribosomal subunit protein uL2
(56)
28S ribosomal RNA
(55)
5.8S ribosomal RNA
(54)
5S ribosomal RNA
(54)
Large ribosomal subunit protein eL42
(53)
Ubiquitin-ribosomal protein eL40 fusion protein
(38)
Messenger RNA
(37)
Ribosomal protein uL16-like
(36)
Large ribosomal subunit protein uL1
(35)
Large ribosomal subunit protein uL10
(26)
Small ribosomal subunit protein eS31
(24)
tRNA
(22)
Large ribosomal subunit protein uL16
(21)
Large ribosomal subunit protein uL11
(20)
Eukaryotic translation initiation factor 3 subunit C
(19)
Eukaryotic translation initiation factor 3 subunit A
(18)
Eukaryotic translation initiation factor 3 subunit E
(18)
Eukaryotic translation initiation factor 3 subunit L
(18)
Eukaryotic translation initiation factor 3 subunit M
(18)
Eukaryotic translation initiation factor 3 subunit B
(17)
Eukaryotic translation initiation factor 3 subunit D
(17)
Eukaryotic translation initiation factor 3 subunit F
(17)
Eukaryotic translation initiation factor 3 subunit H
(17)
Eukaryotic translation initiation factor 3 subunit K
(17)
Large ribosomal subunit protein eL40
(17)
RNA-binding protein PNO1
(17)
Elongation factor 2
(16)
Proliferation-associated protein 2G4
(16)
Eukaryotic translation initiation factor 1A, X-chromosomal
(15)
More...
Interacting ligands
(1)
AYE : prop-2-en-1-amine
(1)
Function and Biology
Biological function
(5)
structural constituent of ribosome
(116)
protein binding
(16)
RNA binding
(12)
protein tag activity
(12)
ubiquitin protein ligase binding
(12)
Biological process
(8)
translation
(116)
antibacterial humoral response
(16)
antimicrobial humoral immune response mediated by antimicrobial peptide
(16)
cytoplasmic translation
(16)
defense response to Gram-positive bacterium
(16)
innate immune response in mucosa
(16)
modification-dependent protein catabolic process
(12)
protein ubiquitination
(12)
Biological cell component
(10)
ribosome
(116)
cytoplasm
(16)
cytosol
(16)
cytosolic ribosome
(16)
cytosolic small ribosomal subunit
(16)
extracellular space
(16)
nucleus
(16)
ribonucleoprotein complex
(16)
nucleoplasm
(12)
small ribosomal subunit
(12)
Sequence and Structure classification
CATH class
(1)
Alpha Beta
(1)
CATH topology
(1)
Ubiquitin-like (UB roll)
(1)
Pfam accession / name
(2)
PF04758 : Ribosomal_S30
(124)
PF00240 : ubiquitin
(18)
Experimental Information
Diffraction protocol
(1)
Single wavelength
(2)
Diffraction radiation source type
(1)
Synchrotron
(1)
Diffraction source
(1)
SLS BEAMLINE X10SA
(1)
Synchrotron site
(1)
SLS
(1)
Diffraction detector type
(1)
Pixel
(1)
Refinement software
(3)
PHENIX
(26)
phenix.real_space_refine
(15)
REFMAC
(2)
EM microscope model
(4)
FEI TITAN KRIOS
(117)
FEI TECNAI ARCTICA
(3)
JEOL CRYO ARM 300
(3)
TFS KRIOS
(2)
EM detector name
(10)
GATAN K2 SUMMIT (4k x 4k)
(45)
GATAN K3 (6k x 4k)
(38)
FEI FALCON II (4k x 4k)
(14)
FEI FALCON III (4k x 4k)
(13)
FEI FALCON IV (4k x 4k)
(8)
GATAN K2 QUANTUM (4k x 4k)
(2)
GATAN K3 BIOQUANTUM (6k x 4k)
(2)
FEI EAGLE (4k x 4k)
(1)
GATAN K3 BIOCONTINUUM (6k x 4k)
(1)
TVIPS TEMCAM-F416 (4k x 4k)
(1)
NMR
NMR software packages
(7)
CNS
(1)
CYANA
(1)
FMC
(1)
NMRPipe
(1)
PSVS
(1)
Sparky
(1)
TALOS
(1)
NMR Field Strength
500.0 - 600
(1)
600.0 - 700
(1)
700.0 - 800
(1)
800.0 - 900
(1)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
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Entries 1 to 10 of 126
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In situ human top-back di-ribosome structure (Composite map)
mRNA decoding in human is kinetically and structurally distinct from bacteria (Consensus LSU focused refined structure)
Holm M, Natchiar KS, Rundlet EJ, Myasnikov AG, Watson ZL, Altman RB, Blanchard SC
Nature
(2023)
[PMID: 37020024 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Modified residues:
4AC
4SU
A2M
AME
B8N
H2U
M3L
MLZ
OMC
OMG
UY1
5MC
6MZ
HIC
OMU
SAC
UY1
G7M
4SU
5MC
G7M
H2U
HY3
HY3
UR3
4AC
6MZ
A2M
MA6
SAC
1MA
HIC
MLZ
V5N
1MA
M3L
PSU
PSU
AME
MA6
OMC
OMG
OMU
UR3
PDBe complex ID:
PDB-CPX-271330 (Preferred)
search this ID
dormant ribosome with eIF5A, eEF2 and SERBP1
Arbekacin-added human 80S ribosome
Tomono J, Asano K, Chiashi T, Tanaka Y, Yokoyama T
J Biochem
(2024)
[PMID: 38227611 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-272442 (Preferred)
search this ID
In situ human Hibernating class3 80S ribosome
Structure of human 48S translation initiation complex upon transfer of initiator tRNA to eIF5B (48S-3)
Petrychenko V, Yi S-H, Liedtke D, Peng BZ, Rodnina MV, Fischer N
Nat Struct Mol Biol
(2024)
[PMID: 39289545 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Modified residues:
A2M
B8N
OMC
OMG
5MC
6MZ
OMU
5MC
UR3
5MU
5MU
6MZ
A2M
MA6
PSU
PSU
JMH
MA6
OMC
OMG
OMU
UR3
PDBe complex ID:
PDB-CPX-249643 (Preferred)
search this ID
MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit
Devarkar SC, Xiong Y
Cell Rep
(2023)
[PMID: 37733586 ]
Source organisms: Middle East respiratory syndrome-related coronavirus , Homo sapiens
Assembly composition: RNA/protein complex
Assembly name:
MERS-CoV 3'-5' exoribonuclease proof-reading complex and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-271381 (Preferred)
search this ID
Cryo-EM structure of the human 43S ribosome with PDCD4
In situ human hibernating class2 80S ribosome
Dibekacin-added human 80S ribosome
Tomono J, Asano K, Chiashi T, Tanaka Y, Yokoyama T
J Biochem
(2024)
[PMID: 38227611 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-272441 (Preferred)
search this ID
...
Entries 1 to 10 of 126