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Entry Information
Entry status
(1)
Experimental methods
(2)
Electron Microscopy
(131)
X-ray diffraction
(1)
Authors
(390)
Beckmann R
(46)
Cheng J
(45)
Berninghausen O
(35)
Ameismeier M
(30)
Thoms M
(23)
Buschauer R
(18)
Denk T
(16)
Kratzat H
(14)
Li Y
(14)
Becker T
(13)
Mackens-Kiani T
(13)
Wang M
(12)
Natchiar SK
(11)
Fischer N
(9)
Frohlich T
(9)
Fröhlich T
(9)
Hayn M
(9)
Hirschenberger M
(9)
Kirchhoff F
(9)
Koepke L
(9)
Petrychenko V
(9)
Rodnina MV
(9)
Sparrer KMJ
(9)
Straub JH
(9)
Sturzel CM
(9)
Stürzel CM
(9)
Yi S-H
(9)
Yi SH
(9)
Yokoyama T
(9)
Cate JHD
(8)
Chang ST
(8)
Huang Z
(8)
Hurt E
(8)
Lau B
(8)
Li W
(8)
Li X
(8)
Montabana E
(8)
Myasnikov AG
(8)
Ward FR
(8)
Wei Z
(8)
Yong X
(8)
Dullea RG
(7)
Fraser CS
(7)
Klaholz BP
(7)
Kutay U
(7)
Liedtke D
(7)
Liras S
(7)
McClure KF
(7)
Peng BZ
(7)
Shirouzu M
(7)
Sokabe M
(7)
Ban N
(6)
Brito Querido J
(6)
Gordiyenko Y
(6)
Green R
(6)
Leibundgut M
(6)
Ramakrishnan V
(6)
van den Heuvel J
(6)
Altman RB
(5)
Blanchard SC
(5)
Holm M
(5)
Natchiar KS
(5)
Rundlet EJ
(5)
Taunton J
(5)
Wang HY
(5)
Watson ZL
(5)
Ye X
(5)
Zemp I
(5)
Akichika S
(4)
Best K
(4)
Fraser C
(4)
Irie T
(4)
Ishibashi K
(4)
Ishiguro K
(4)
Iwasaki S
(4)
Karousis ED
(4)
Ma D
(4)
Matsuzawa I
(4)
Mishima Y
(4)
Mito M
(4)
Muehlemann O
(4)
Muhlemann O
(4)
Mühlemann O
(4)
Saito H
(4)
Sakaguchi Y
(4)
Scaiola A
(4)
Schubert K
(4)
Suzuki T
(4)
Wakabayashi K
(4)
Zhao X
(4)
von Loeffelholz O
(4)
Artus-Revel CG
(3)
Bhaskar V
(3)
Bretones G
(3)
Cavadini S
(3)
Chaker-Margot M
(3)
Chao JA
(3)
Chen FX
(3)
Diaz-Lopez I
(3)
Diehl FF
(3)
More...
Homo / hetero assembly
(1)
hetero
(132)
Assembly composition
(2)
RNA/protein complex
(131)
protein/protein complex
(1)
Assembly polymer count
(36)
37-mer
(12)
83-mer
(11)
36-mer
(10)
35-mer
(9)
86-mer
(9)
80-mer
(8)
85-mer
(8)
81-mer
(7)
38-mer
(6)
84-mer
(6)
50-mer
(4)
54-mer
(4)
34-mer
(3)
51-mer
(3)
79-mer
(3)
82-mer
(3)
33-mer
(2)
53-mer
(2)
57-mer
(2)
78-mer
(2)
88-mer
(2)
nonadecamer
(2)
171-mer
(1)
172-mer
(1)
22-mer
(1)
23-mer
(1)
26-mer
(1)
31-mer
(1)
48-mer
(1)
49-mer
(1)
52-mer
(1)
72-mer
(1)
74-mer
(1)
75-mer
(1)
89-mer
(1)
92-mer
(1)
Resolution distribution
1.5 - 2
(4)
2.0 - 2.5
(9)
2.5 - 3
(44)
3.0 - 3.5
(41)
3.5 - 4
(25)
4.0 - 4.5
(5)
4.5 - 5
(2)
5.5 - 6
(1)
6.0 - 6.5
(1)
Release year distribution
2010 - 2015
(5)
2015 - 2020
(56)
2020 - 2025
(104)
2025 - 2030
(10)
Journal
(17)
Nature
(25)
Nat Struct Mol Biol
(18)
Science
(16)
Nat Commun
(14)
Nucleic Acids Res
(12)
Mol Cell
(9)
To be published
(8)
Cell
(5)
Cell Rep
(5)
EMBO J
(4)
Cell Res
(3)
Elife
(3)
PLoS Biol
(3)
Cancer Discov
(2)
Front Mol Biosci
(2)
J Biochem
(2)
bioRxiv
(1)
Macromolecules
Organism superkingdom
(1)
Eukaryota
(132)
Organism name
(3)
Homo sapiens
(127)
Mus musculus
(4)
Oryctolagus cuniculus
(1)
Molecule name
(2)
40S ribosomal protein S14
(132)
Small ribosomal subunit protein uS11
(132)
Molecule type
(1)
Protein
(132)
Gene names
(3)
PRO2640
(128)
RPS14
(128)
Rps14
(4)
Interacting Molecules
(316)
Small ribosomal subunit protein eS1
(132)
Small ribosomal subunit protein uS15
(132)
Small ribosomal subunit protein eS7
(131)
Small ribosomal subunit protein eS27
(130)
Small ribosomal subunit protein eS6
(130)
Small ribosomal subunit protein eS8
(130)
Small ribosomal subunit protein uS17
(130)
Small ribosomal subunit protein uS4
(130)
Small ribosomal subunit protein uS8
(130)
Small ribosomal subunit protein eS24
(129)
Small ribosomal subunit protein eS28
(128)
Small ribosomal subunit protein uS7
(127)
Small ribosomal subunit protein uS9
(127)
Small ribosomal subunit protein eS17
(126)
Small ribosomal subunit protein uS12
(125)
Small ribosomal subunit protein uS2
(125)
Small ribosomal subunit protein eS19
(124)
Small ribosomal subunit protein eS25
(124)
Small ribosomal subunit protein uS13
(124)
Small ribosomal subunit protein uS19
(124)
Small ribosomal subunit protein eS21
(123)
Small ribosomal subunit protein uS5
(123)
Small ribosomal subunit protein eS4, X isoform
(121)
Small ribosomal subunit protein RACK1
(115)
Small ribosomal subunit protein eS12
(115)
18S Ribosomal RNA
(114)
Small ribosomal subunit protein eS10
(114)
Small ribosomal subunit protein uS10
(114)
Small ribosomal subunit protein uS14
(114)
Small ribosomal subunit protein uS3
(114)
Small ribosomal subunit protein eS26
(107)
Small ribosomal subunit protein eS30
(106)
Small ribosomal subunit protein eS32
(98)
Ubiquitin-ribosomal protein eS31 fusion protein
(88)
Large ribosomal subunit protein eL19
(64)
Large ribosomal subunit protein eL24
(64)
Large ribosomal subunit protein eL14
(63)
Large ribosomal subunit protein eL15
(63)
Large ribosomal subunit protein eL18
(63)
Large ribosomal subunit protein eL20
(63)
Large ribosomal subunit protein eL21
(63)
Large ribosomal subunit protein eL22
(63)
Large ribosomal subunit protein eL28
(63)
Large ribosomal subunit protein eL30
(63)
Large ribosomal subunit protein eL31
(63)
Large ribosomal subunit protein eL32
(63)
Large ribosomal subunit protein eL33
(63)
Large ribosomal subunit protein eL34
(63)
Large ribosomal subunit protein eL36
(63)
Large ribosomal subunit protein eL37
(63)
Large ribosomal subunit protein eL38
(63)
Large ribosomal subunit protein eL43
(63)
Large ribosomal subunit protein eL6
(63)
Large ribosomal subunit protein eL8
(63)
Large ribosomal subunit protein uL13
(63)
Large ribosomal subunit protein uL14
(63)
Large ribosomal subunit protein uL18
(63)
Large ribosomal subunit protein uL22
(63)
Large ribosomal subunit protein uL23
(63)
Large ribosomal subunit protein uL24
(63)
Large ribosomal subunit protein uL29
(63)
Large ribosomal subunit protein uL3
(63)
Large ribosomal subunit protein uL30
(63)
Large ribosomal subunit protein uL4
(63)
Large ribosomal subunit protein uL5
(63)
Large ribosomal subunit protein uL6
(63)
Large ribosomal subunit protein eL13
(62)
Large ribosomal subunit protein eL29
(62)
Large ribosomal subunit protein eL39
(62)
Large ribosomal subunit protein uL15
(62)
Large ribosomal subunit protein eL27
(61)
Large ribosomal subunit protein uL2
(58)
28S ribosomal RNA
(56)
5.8S ribosomal RNA
(55)
5S ribosomal RNA
(55)
Large ribosomal subunit protein eL42
(55)
Ubiquitin-ribosomal protein eL40 fusion protein
(39)
Messenger RNA
(38)
Ribosomal protein uL16-like
(38)
Large ribosomal subunit protein uL1
(36)
Large ribosomal subunit protein uL10
(25)
Small ribosomal subunit protein eS31
(24)
RNA-binding protein PNO1
(22)
tRNA
(22)
Eukaryotic translation initiation factor 3 subunit C
(20)
Large ribosomal subunit protein uL16
(20)
Eukaryotic translation initiation factor 3 subunit A
(19)
Eukaryotic translation initiation factor 3 subunit E
(19)
Eukaryotic translation initiation factor 3 subunit L
(19)
Eukaryotic translation initiation factor 3 subunit M
(19)
Large ribosomal subunit protein uL11
(19)
Eukaryotic translation initiation factor 3 subunit D
(18)
Eukaryotic translation initiation factor 3 subunit F
(18)
Eukaryotic translation initiation factor 3 subunit H
(18)
Eukaryotic translation initiation factor 3 subunit K
(18)
Large ribosomal subunit protein eL40
(18)
Pre-rRNA-processing protein TSR1 homolog
(17)
Elongation factor 2
(16)
Eukaryotic translation initiation factor 3 subunit B
(16)
Proliferation-associated protein 2G4
(16)
More...
Interacting ligands
(2)
MG : MAGNESIUM ION
(42)
K : POTASSIUM ION
(7)
Function and Biology
Biological function
(5)
structural constituent of ribosome
(125)
RNA binding
(122)
mRNA 5'-UTR binding
(122)
translation regulator activity
(122)
protein binding
(118)
Biological process
(10)
translation
(125)
cytoplasmic translation
(122)
erythrocyte differentiation
(122)
maturation of SSU-rRNA
(122)
negative regulation of transcription by RNA polymerase II
(122)
regulation of translation
(122)
ribosomal small subunit assembly
(122)
ribosomal small subunit biogenesis
(122)
translation at postsynapse
(4)
translation at presynapse
(4)
Biological cell component
(19)
ribosome
(125)
cytoplasm
(122)
cytosol
(122)
cytosolic ribosome
(122)
cytosolic small ribosomal subunit
(122)
nucleolus
(122)
nucleus
(122)
postsynaptic density
(122)
ribonucleoprotein complex
(122)
small ribosomal subunit
(122)
small-subunit processome
(122)
synapse
(122)
extracellular exosome
(118)
focal adhesion
(118)
membrane
(118)
nucleoplasm
(118)
mitochondrion
(4)
postsynapse
(4)
presynapse
(4)
Sequence and Structure classification
CATH class
(1)
Alpha Beta
(6)
CATH topology
(1)
Nucleotidyltransferase; domain 5
(6)
Pfam accession / name
(1)
PF00411 : Ribosomal_S11
(132)
Experimental Information
Diffraction protocol
(1)
Single wavelength
(2)
Diffraction radiation source type
(1)
Synchrotron
(1)
Diffraction source
(1)
APS BEAMLINE 24-ID-C
(1)
Synchrotron site
(1)
APS
(1)
Diffraction detector type
(1)
Pixel
(1)
Refinement software
(3)
PHENIX
(27)
phenix.real_space_refine
(16)
REFMAC
(2)
EM microscope model
(4)
FEI TITAN KRIOS
(124)
FEI TECNAI ARCTICA
(3)
JEOL CRYO ARM 300
(3)
TFS KRIOS
(2)
EM detector name
(10)
GATAN K2 SUMMIT (4k x 4k)
(46)
GATAN K3 (6k x 4k)
(40)
FEI FALCON II (4k x 4k)
(15)
FEI FALCON III (4k x 4k)
(15)
FEI FALCON IV (4k x 4k)
(8)
GATAN K3 BIOQUANTUM (6k x 4k)
(4)
FEI EAGLE (4k x 4k)
(1)
GATAN K2 QUANTUM (4k x 4k)
(1)
GATAN K3 BIOCONTINUUM (6k x 4k)
(1)
TVIPS TEMCAM-F416 (4k x 4k)
(1)
Representative Structures
Representative Structures
Entries
Macromolecules
Compounds
Protein families
...
Entries 1 to 10 of 132
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Cryo-EM structure of the human 80S ribosome with 4 um Tigecycline
In situ human top-back di-ribosome structure (Composite map)
SARS-COV-2 nsp1 in complex with human 40S ribosome
Wang L, Shi M, Wu H
bioRxiv
(2020)
[PMID: 32995777 ]
Source organisms: Homo sapiens , Severe acute respiratory syndrome coronavirus 2
Assembly composition: RNA/protein complex
Assembly name:
SARS-CoV-2 NSP10-NSP16 2'-O-methyltransferase complex and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-276038 (Preferred)
search this ID
dormant ribosome with eIF5A, eEF2 and SERBP1
MERS-CoV Nsp1 protein bound to the Human 40S Ribosomal subunit
Devarkar SC, Xiong Y
Cell Rep
(2023)
[PMID: 37733586 ]
Source organisms: Middle East respiratory syndrome-related coronavirus , Homo sapiens
Assembly composition: RNA/protein complex
Assembly name:
MERS-CoV 3'-5' exoribonuclease proof-reading complex and RNA
(Preferred)
search this complex
PDBe complex ID:
PDB-CPX-271381 (Preferred)
search this ID
Structure of human eIF3 core from closed 48S translation initiation complex
Petrychenko V, Yi S-H, Liedtke D, Peng BZ, Rodnina MV, Fischer N
Nat Struct Mol Biol
(2024)
[PMID: 39289545 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
Modified residues:
A2M
B8N
OMC
OMG
5MC
6MZ
OMU
5MC
UR3
5MU
5MU
6MZ
A2M
MA6
PSU
PSU
JMH
MA6
OMC
OMG
OMU
UR3
PDBe complex ID:
PDB-CPX-271450 (Preferred)
search this ID
In situ human hibernating class2 80S ribosome
Cryo-EM structure of the human 40S ribosome with PDCD4 and eIF3G
Cryo-EM structure of the human 40S ribosome with PDCD4
Arbekacin-added human 80S ribosome
Tomono J, Asano K, Chiashi T, Tanaka Y, Yokoyama T
J Biochem
(2024)
[PMID: 38227611 ]
Source organism: Homo sapiens
Assembly composition: RNA/protein complex
PDBe complex ID:
PDB-CPX-272442 (Preferred)
search this ID
...
Entries 1 to 10 of 132