Uniprot accession / id : P62962  OR   Uniprot accession / id : P07737
 
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Entry Information
Entry status  (1)
REL
(22)
 
Experimental methods  (3)
X-ray diffraction
(18)
Electron Microscopy
(3)
Solution NMR
(1)
 
Authors  (60)
Dominguez R
(7)
Almo SC
(5)
Mechold U
(5)
Rebowski G
(5)
Comisso M
(4)
Fedorov AA
(4)
Ladant D
(4)
Missinou AA
(4)
Plancqueel S
(4)
Raoux-Barbot D
(4)
Renault L
(4)
Retailleau P
(4)
Teixeira-Nunes M
(4)
Velours C
(4)
Arnesen T
(3)
Boczkowska M
(3)
Boopathy S
(3)
Bosco DA
(3)
Drazic A
(3)
Ferron F
(3)
Goode BL
(3)
Goris M
(3)
Jansen S
(3)
Landers JE
(3)
Mahoney NM
(3)
Ree R
(3)
Schiffer CA
(3)
Shandilya SM
(3)
Shandilya SMD
(3)
Silvas TV
(3)
Tischbein M
(3)
Zitzewitz JA
(3)
Fedorov E
(2)
Lee SH
(2)
Pollard TD
(2)
Raunser S
(2)
Rozwarski DA
(2)
Baek K
(1)
Barrie KR
(1)
Belyy A
(1)
Bieling P
(1)
Boiero Sanders M
(1)
Constantine KL
(1)
Farmer 2nd BT
(1)
Farmer BT
(1)
Farmer II BT
(1)
Friedrichs MS
(1)
Funk J
(1)
Janmey PA
(1)
Korn ED
(1)
Lavoie T
(1)
Liu X
(1)
Merino F
(1)
Metzler WJ
(1)
Mueller L
(1)
Oosterheert W
(1)
Palmer NJ
(1)
Prumbaum D
(1)
Shu S
(1)
Texeira-Nuns M
(1)
 
Homo / hetero assembly  (2)
hetero
(16)
homo
(6)
 
Assembly composition  (2)
protein/protein complex
(16)
protein structure
(6)
 
Assembly polymer count  (5)
trimer
(9)
monomer
(6)
dimer
(4)
decamer
(2)
tetramer
(1)
 
Resolution distribution
1.5 - 2
(7)
2.0 - 2.5
(10)
2.5 - 3
(1)
3.5 - 4
(2)
6.0 - 6.5
(1)
 
Release year distribution
1990 - 1995
(1)
1995 - 2000
(6)
2005 - 2010
(3)
2010 - 2015
(3)
2015 - 2020
(6)
2020 - 2025
(10)
 
Journal  (10)
PLoS Pathog
(4)
Proc Natl Acad Sci U S A
(4)
Nat Struct Biol
(3)
Sci Adv
(3)
EMBO J
(2)
To be published
(2)
Nat Commun
(1)
Nature
(1)
Protein Sci
(1)
Science
(1)
 
Macromolecules
Organism superkingdom  (2)
Eukaryota
(21)
Bacteria
(3)
 
Organism name  (3)
Homo sapiens
(21)
Vibrio nigripulchritudo
(2)
Vibrio nigripulchritudo SFn135
(1)
 
Molecule name  (5)
Epididymis tissue protein Li 184a
(22)
Profilin I
(22)
Profilin-1
(22)
MARTX
(3)
Peptidase C80 domain-containing protein
(3)
 
Molecule type  (1)
Protein
(22)
 
Gene names  (2)
PFN1
(22)
VIBNI_0210
(3)
 
Interacting Molecules  (15)
Actin, alpha skeletal muscle
(9)
Actin, cytoplasmic 1
(3)
N-alpha-acetyltransferase 80
(3)
Vasodilator-stimulated phosphoprotein
(3)
Cell division control protein 12
(1)
Inverted formin-2
(1)
L-PRO10
(1)
MARTX
(1)
Major actin
(1)
Maltose/maltodextrin-binding periplasmic protein
(1)
Methylated-DNA--protein-cysteine methyltransferase
(1)
PROTEIN (L-PRO10-IODOTYROSINE)
(1)
PROTEIN (PROLINE PEPTIDE)
(1)
Peptidase C80 domain-containing protein
(1)
Phalloidin (Amanita phalloides)
(1)
 
Interacting ligands  (10)
PEO : HYDROGEN PEROXIDE
(3)
SO4 : SULFATE ION
(3)
GOL : GLYCEROL
(2)
LAB : LATRUNCULIN B
(2)
PEG : DI(HYDROXYETHYL)ETHER
(2)
PO4 : PHOSPHATE ION
(2)
TRS : 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL
(2)
CH1 : 3'-DEOXY-CYTIDINE-5'-TRIPHOSPHATE
(1)
HOM : 7-HYDROXY-4-METHYL-3-(2-HYDROXY-ETHYL)COUMARIN
(1)
MN : MANGANESE (II) ION
(1)
 
Function and Biology
EC number / name  (1)
4.6.1.1 : Adenylate cyclase
(3)
 
Biological function  (11)
RNA binding
(22)
actin binding
(22)
actin monomer binding
(22)
adenyl-nucleotide exchange factor activity
(22)
cadherin binding
(22)
phosphatidylinositol-4,5-bisphosphate binding
(22)
phosphotyrosine residue binding
(22)
proline-rich region binding
(22)
protein binding
(22)
small GTPase binding
(22)
calcium- and calmodulin-responsive adenylate cyclase activity
(3)
 
Biological process  (17)
actin cytoskeleton organization
(22)
modification of postsynaptic actin cytoskeleton
(22)
modulation of chemical synaptic transmission
(22)
negative regulation of actin filament bundle assembly
(22)
negative regulation of actin filament polymerization
(22)
negative regulation of stress fiber assembly
(22)
neural tube closure
(22)
positive regulation of ATP-dependent activity
(22)
positive regulation of actin filament bundle assembly
(22)
positive regulation of actin filament polymerization
(22)
positive regulation of epithelial cell migration
(22)
positive regulation of ruffle assembly
(22)
protein stabilization
(22)
regulation of actin filament organization
(22)
regulation of actin filament polymerization
(22)
regulation of transcription by RNA polymerase II
(22)
synapse maturation
(22)
 
Biological cell component  (11)
blood microparticle
(22)
cell cortex
(22)
cytoplasm
(22)
cytoskeleton
(22)
cytosol
(22)
extracellular exosome
(22)
focal adhesion
(22)
glutamatergic synapse
(22)
membrane
(22)
nucleus
(22)
extracellular region
(3)
 
Sequence and Structure classification
SCOP fold  (1)
Profilin-like
(9)
 
SCOP family  (1)
Profilin (actin-binding protein)
(9)
 
CATH class  (1)
Alpha Beta
(12)
 
CATH topology  (1)
Beta-Lactamase
(12)
 
Pfam accession / name  (2)
PF00235 : Profilin
(22)
PF03497 : Anthrax_toxA
(3)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(15)
 
Diffraction radiation source type  (2)
Synchrotron
(10)
Rotating anode
(8)
 
Diffraction source  (8)
CHESS BEAMLINE F1
(3)
RIGAKU MICROMAX-007 HF
(3)
RIGAKU RUH2R
(3)
SOLEIL BEAMLINE PROXIMA 1
(3)
APS BEAMLINE 14-BM-C
(2)
RIGAKU RU200
(2)
CHESS BEAMLINE F2
(1)
SOLEIL BEAMLINE PROXIMA 2
(1)
 
Synchrotron site  (3)
CHESS
(4)
SOLEIL
(4)
APS
(2)
 
Diffraction detector type  (3)
Pixel
(7)
CCD
(6)
Area detector
(5)
 
Refinement software  (5)
PHENIX
(7)
X-PLOR
(6)
BUSTER
(4)
REFMAC
(3)
PROFFT
(2)
 
EM microscope model  (1)
FEI TITAN KRIOS
(3)
 
EM detector name  (2)
GATAN K3 (6k x 4k)
(2)
GATAN K3 BIOQUANTUM (6k x 4k)
(1)
 
NMR
NMR software packages  (1)
X-PLOR
(1)
 
Representative Structures
Representative Structures
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Entries 1 to 10 of 22
Entries 1 to 10 of 22
 Select all entries on this page
Ternary Complex of Beta/Gamma-Actin with Profilin and AnCoA-NAA80
Rebowski G, Boczkowska M, Dominguez R
Sci Adv (2020) [PMID: 32284999  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Bound ligands: MES    SOP    SOP    CA    GOL    LAB    CA    ATP    ATP   
Modified residues: HIC    HIC   
PDBe complex ID: PDB-CPX-139729 (Preferred)   search this ID
PDBe-KB: P07737    P60709    Q93015   
X-ray diffraction
2.5Å resolution
Released: 29 Jan 2020
Model geometry
Fit model/data
6nbw
6nbw
6nbw
INF2 at the Barbed End of F-Actin with Incoming Profilin-Actin
Palmer NJ, Barrie KR, Dominguez R
Nature (2024) [PMID: 38843827  ]
Assembly composition: protein/protein complex
Bound ligands: MG    ADP    ADP    ATP    MG    ATP   
Modified residues: HIC    HIC   
PDBe complex ID: PDB-CPX-272396 (Preferred)   search this ID
PDBe-KB: P07737    P68135    Q27J81   
Electron Microscopy
3.79Å resolution
Released: 29 May 2024
Model geometry
Fit model/data
Data not analysed
9azp
9azp
9azp
Ternary Complex of Ac-Alpha-Actin with Profilin and AcCoA-NAA80
Rebowski G, Boczkowska M, Dominguez R
Sci Adv (2020) [PMID: 32284999  ]
Assembly composition: protein/protein complex
Bound ligands: ACO    MES    CA    GOL    LAB    CA    ACO    ATP    ATP   
Modified residues: HIC    KKD    KKD    HIC   
PDBe complex ID: PDB-CPX-139730 (Preferred)   search this ID
PDBe-KB: P07737    P68135    Q93015   
X-ray diffraction
2.9Å resolution
Released: 29 Jan 2020
Model geometry
Fit model/data
6nas
6nas
6nas
Structure of the F-actin barbed end bound by Cdc12 and profilin (ring complex) at a resolution of 6.3 Angstrom
Oosterheert W, Boiero Sanders M, Funk J, Prumbaum D, Raunser S, Bieling P
Science (2024) [PMID: 38603491  ]
Assembly composition: protein/protein complex
Bound ligands: MG    ADP    ADP    MG    PO4   
Modified residues: HIC    EEP    HYP    HYP    HIC    DTH    DTH    EEP   
PDBe complex ID: PDB-CPX-242853 (Preferred)   search this ID
PDBe-KB: P07737    P16455    Q10059    P60709   
Electron Microscopy
6.25Å resolution
Released: 10 Apr 2024
Model geometry
Fit model/data
Data not analysed
8rty
8rty
8rty
ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo MARTX toxin, bound to ATP-Mg-actin, human profilin 1 and a sulfate ion
Teixeira-Nunes M, Renault L, Retailleau P
PLoS Pathog (2023) [PMID: 37747912  ]
Assembly composition: protein/protein complex
Bound ligands: MG    PG4    GOL    LAB    PEO    SO4    TRS    ATP    MG    PG4    ATP    TRS   
PDBe complex ID: PDB-CPX-269703 (Preferred)   search this ID
PDBe-KB: P07737    A0A9P1NJI6    P68135   
X-ray diffraction
1.699Å resolution
Released: 20 Sep 2023
Model geometry
Fit model/data
8bjj
8bjj
8bjj
chimera of the inactive ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo MARTX toxin, with the double mutation K3528M and K3535I, fused to a proline-Rich-Domain (PRD) and profilin, bound to Latrunculin B-ADP-Mg-actin
Teixeira-Nunes M, Renault L, Retailleau P
PLoS Pathog (2023) [PMID: 37747912  ]
Assembly composition: protein/protein complex
Bound ligands: MG    PEG    GOL    LAB    PEG    PEO    ADP    ADP    SO4    TRS    MG    TRS   
Assembly name: Actin, alpha skeletal muscle and Peptidase C80 domain-containing protein, Profilin-1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-240078 (Preferred)   search this ID
PDBe-KB: A0A9P1NJI6    P07737    P68135   
X-ray diffraction
1.69Å resolution
Released: 20 Sep 2023
Model geometry
Fit model/data
8bjh
8bjh
8bjh
Structure of the V. vulnificus ExoY-G-actin-profilin complex
Belyy A, Merino F, Raunser S
Nat Commun (2021) [PMID: 34785651  ]
Assembly composition: protein/protein complex
Bound ligands: CA    CA    ATP    ATP   
Modified residues: HIC    HIC   
PDBe complex ID: PDB-CPX-100048 (Preferred)   search this ID
PDBe-KB: P07737    P0AEX9    P60709    A0A023NA98   
Electron Microscopy
3.9Å resolution
Released: 17 Nov 2021
Model geometry
Fit model/data
Data not analysed
7p1h
7p1h
7p1h
ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo MARTX toxin (residue Q3455 to L3863) in complex with 3'deoxyCTP and two manganese cations bound to Latrunculin-B-ADP-Mn-actin
Texeira-Nuns M, Retailleau P, Renault L
PLoS Pathog (2023) [PMID: 37747912  ]
Assembly composition: protein/protein complex
Bound ligands: CH1    LAB    ADP    ADP    MN    MN    CH1   
Assembly name: Actin, alpha skeletal muscle and Peptidase C80 domain-containing protein, Profilin-1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-240078 (Preferred)   search this ID
PDBe-KB: A0A9P1NJI6    P07737    P68135   
X-ray diffraction
2.218Å resolution
Released: 20 Sep 2023
Model geometry
Fit model/data
8br0
8br0
8br0
chimera of ExoY Nucleotidyl Cyclase domain from Vibrio nigripulchritudo fused to a proline-Rich-Domain (PRD) and profilin, bound to ADP-Mg-actin and a sulfate ion
Teixeira-Nunes M, Renault L, Retailleau P
PLoS Pathog (2023) [PMID: 37747912  ]
Assembly composition: protein/protein complex
Bound ligands: MG    PEG    GOL    PEG    PEO    ADP    ADP    SO4    TRS    MG    TRS   
Assembly name: Actin, alpha skeletal muscle and Peptidase C80 domain-containing protein, Profilin-1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-240078 (Preferred)   search this ID
PDBe-KB: A0A9P1NJI6    P07737    P68135   
X-ray diffraction
1.75Å resolution
Released: 20 Sep 2023
Model geometry
Fit model/data
8bji
8bji
8bji
Ternary Complex of Ac-Alpha-Actin with Profilin and CoA-NAA80
Rebowski G, Boczkowska M, Dominguez R
Sci Adv (2020) [PMID: 32284999  ]
Assembly composition: protein/protein complex
Bound ligands: COA    MES    CA    GOL    LAB    CA    ATP    COA    ATP   
Modified residues: HIC    KKD    KKD    HIC   
PDBe complex ID: PDB-CPX-139730 (Preferred)   search this ID
PDBe-KB: P07737    P68135    Q93015   
X-ray diffraction
2Å resolution
Released: 15 Apr 2020
Model geometry
Fit model/data
Data not analysed
6nbe
6nbe
6nbe
Entries 1 to 10 of 22
Entries 1 to 10 of 22