Uniprot accession / id : P82198  OR   Uniprot accession / id : Q15582  OR   Uniprot accession / id : H0YAB8
 
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Entry Information
Entry status  (1)
REL
(10)
 
Experimental methods  (4)
X-ray diffraction
(5)
Solution NMR
(3)
Electron Microscopy
(1)
Solid-state NMR
(1)
 
Authors  (60)
Enghild JJ
(6)
Nielsen NS
(4)
Poulsen ET
(4)
Andersen GR
(3)
Gadeberg TAF
(3)
Harwood SL
(3)
Pedersen JS
(3)
Runager K
(3)
Weberskov CE
(3)
Abdul Rahim MK
(2)
Alag R
(2)
Anandalakshmi V
(2)
Boo K
(2)
Karring H
(2)
Koh SK
(2)
Kolds H
(2)
Koldsø H
(2)
Kristensen T
(2)
Lee J
(2)
Low JYK
(2)
Malmendal A
(2)
Mehta JS
(2)
Mohanram H
(2)
Mu Y
(2)
Neo D
(2)
Nielsen JT
(2)
Nielsen N
(2)
Nielsen NC
(2)
Otzen DE
(2)
Peh GSL
(2)
Pervushin K
(2)
Schitt B
(2)
Schiøtt B
(2)
Shi X
(2)
Srensen CS
(2)
Sørensen CS
(2)
Underhaug J
(2)
Zhou L
(2)
Cho H-S
(1)
Garcia-Castellanos R
(1)
García-Castellanos R
(1)
Gomis-Ruth FX
(1)
Gomis-Rüth FX
(1)
Goulas T
(1)
Inoue M
(1)
Kigawa T
(1)
Kim E
(1)
Kim J
(1)
Koshiba S
(1)
Lukassen MV
(1)
Nielsen SN
(1)
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
(1)
Thgersen IB
(1)
Thogersen BI
(1)
Thøgersen IB
(1)
Tochio N
(1)
Tomizawa T
(1)
Yokoyama S
(1)
Yoneyama M
(1)
Yoo J-H
(1)
 
Homo / hetero assembly  (1)
homo
(10)
 
Assembly composition  (1)
protein structure
(10)
 
Assembly polymer count  (3)
monomer
(8)
icosamer
(1)
tetramer
(1)
 
Resolution distribution
1.5 - 2
(1)
2.0 - 2.5
(1)
2.5 - 3
(2)
4.5 - 5
(2)
 
Release year distribution
2000 - 2005
(1)
2005 - 2010
(2)
2010 - 2015
(2)
2015 - 2020
(4)
2020 - 2025
(5)
 
Journal  (5)
J Biol Chem
(3)
Biochim Biophys Acta
(2)
Commun Biol
(2)
To be published
(2)
Structure
(1)
 
Macromolecules
Organism superkingdom  (1)
Eukaryota
(10)
 
Organism name  (1)
Homo sapiens
(10)
 
Molecule name  (5)
Beta ig-h3
(10)
Kerato-epithelin
(10)
RGD-CAP
(10)
RGD-containing collagen-associated protein
(10)
Transforming growth factor-beta-induced protein ig-h3
(10)
 
Molecule type  (1)
Protein
(10)
 
Gene names  (2)
BIGH3
(10)
TGFBI
(10)
 
Interacting ligands  (1)
ACT : ACETATE ION
(1)
 
Sequence and Structure classification
CATH class  (1)
Mainly Beta
(4)
 
CATH topology  (1)
FAS1 domain
(4)
 
Pfam accession / name  (1)
PF02469 : Fasciclin
(8)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(5)
 
Diffraction radiation source type  (1)
Synchrotron
(5)
 
Diffraction source  (4)
PETRA III, EMBL c/o DESY BEAMLINE P14 (MX2)
(2)
ESRF BEAMLINE ID29
(1)
PAL/PLS BEAMLINE 4A
(1)
PETRA III, EMBL c/o DESY BEAMLINE P13 (MX1)
(1)
 
Synchrotron site  (3)
PETRA III, EMBL c/o DESY
(3)
ESRF
(1)
PAL/PLS
(1)
 
Diffraction detector type  (2)
Pixel
(3)
CCD
(2)
 
Refinement software  (3)
PHENIX
(5)
BUSTER-TNT
(1)
CNS
(1)
 
EM microscope model  (1)
FEI TITAN KRIOS
(1)
 
EM detector name  (1)
GATAN K2 SUMMIT (4k x 4k)
(1)
 
NMR
NMR software packages  (13)
NMRPipe
(3)
TopSpin
(3)
ARIA
(2)
CNS
(2)
CYANA
(2)
REDCAT
(2)
Sparky
(2)
TALOS
(2)
GROMACS
(1)
KUJIRA
(1)
NMRFAM-SPARKY
(1)
NMRView
(1)
XwinNMR
(1)
 
NMR Field Strength
600.0 - 700
(2)
700.0 - 800
(4)
800.0 - 900
(4)
 
Representative Structures
Representative Structures
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Entries 1 to 10 of 10
Entries 1 to 10 of 10
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TGFBIp mutant A546T
Andersen GR, Nielsen NS, Gadeberg TAF
J Biol Chem (2021) [PMID: 34097874  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Transforming growth factor-beta-induced protein ig-h3 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-172330 (Preferred)   search this ID
PDBe-KB: Q15582   
X-ray diffraction
4.8Å resolution
Released: 23 Dec 2020
Model geometry
Fit model/data
7asc
7asc
7asc
Structure of human transforming growth factor beta-induced protein (TGFBIp).
Garcia-Castellanos R, Nielsen SN, Runager K, Thogersen BI, Goulas T, Enghild JJ, Gomis-Ruth FX
Structure (2017) [PMID: 28988748  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: ACT    ACT   
Assembly name: Transforming growth factor-beta-induced protein ig-h3 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-172330 (Preferred)   search this ID
PDBe-KB: Q15582   
X-ray diffraction
2.93Å resolution
Released: 9 Aug 2017
Model geometry
Fit model/data
5nv6
5nv6
5nv6
Monomer structure of transforming growth factor beta induced protein (TGFBIp) G623R fibril
Low JYK, Pervushin K
Commun Biol (2023) [PMID: 36997596  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Transforming growth factor-beta-induced protein ig-h3 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-274569 (Preferred)   search this ID
PDBe-KB: Q15582   
Solid-state NMR
Released: 26 Jul 2023
Model geometry
Fit model/data
Data not analysed
8hga
8hga
8hga
Structure of transforming growth factor beta induced protein (TGFBIp) G623R fibril
Low JYK, Pervushin K
Commun Biol (2023) [PMID: 36997596  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Transforming growth factor-beta-induced protein ig-h3 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-274568 (Preferred)   search this ID
PDBe-KB: Q15582   
Electron Microscopy
4.9Å resolution
Released: 26 Jul 2023
Model geometry
Fit model/data
Data not analysed
8hia
8hia
8hia
Crystal structure of the GCD-associated TGFBIp mutant R124H
Andersen GR, Gadeberg TAF, Nielsen NS, Enghild JJ
J Biol Chem (2021) [PMID: 34097874  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Transforming growth factor-beta-induced protein ig-h3 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-172330 (Preferred)   search this ID
PDBe-KB: Q15582   
X-ray diffraction
2.65Å resolution
Released: 23 Dec 2020
Model geometry
Fit model/data
7as7
7as7
7as7
TGFBIp mutant R555W
Nielsen NS, Gadeberg TAF, Andersen GR
J Biol Chem (2021) [PMID: 34097874  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Transforming growth factor-beta-induced protein ig-h3 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-172330 (Preferred)   search this ID
PDBe-KB: Q15582   
X-ray diffraction
2Å resolution
Released: 23 Dec 2020
Model geometry
Fit model/data
7asg
7asg
7asg
Fas1-4, R555W
Underhaug J, Nielsen N, Runager K
Biochim Biophys Acta (2013) [PMID: 24129074  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Transforming growth factor-beta-induced protein ig-h3 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-172330 (Preferred)   search this ID
PDBe-KB: Q15582   
Solution NMR
Released: 21 Aug 2013
Model geometry
Fit model/data
Data not analysed
2ltc
2ltc
2ltc
The fourth FAS1 domain structure of human Bigh3
Yoo J-H, Cho H-S
To be published
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Transforming growth factor-beta-induced protein ig-h3 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-172330 (Preferred)   search this ID
PDBe-KB: Q15582   
X-ray diffraction
2.5Å resolution
Released: 21 Jul 2009
Model geometry
Fit model/data
2vxp
2vxp
2vxp
Solution structure of the FAS1 domain of human transforming growth factor-beta induced protein IG-H3
Yoneyama M, Tomizawa T, Tochio N, Koshiba S, Inoue M, Kigawa T, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Transforming growth factor-beta-induced protein ig-h3 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-172330 (Preferred)   search this ID
PDBe-KB: Q15582   
Solution NMR
Released: 2 Nov 2005
Model geometry
Fit model/data
Data not deposited
1x3b
1x3b
1x3b
Wild-type FAS1-4
Underhaug J, Nielsen N, Runager K
Biochim Biophys Acta (2013) [PMID: 24129074  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Transforming growth factor-beta-induced protein ig-h3 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-172330 (Preferred)   search this ID
PDBe-KB: Q15582   
Solution NMR
Released: 21 Aug 2013
Model geometry
Fit model/data
Data not analysed
2ltb
2ltb
2ltb
Entries 1 to 10 of 10
Entries 1 to 10 of 10