Uniprot accession / id : P97868  OR   Uniprot accession / id : Q7Z6E9  OR   Uniprot accession / id : A0A087WY32
 
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Entry Information
Entry status  (1)
REL
(5)
 
Experimental methods  (2)
Solution NMR
(4)
X-ray diffraction
(1)
 
Authors  (53)
Ab E
(2)
Faro A
(2)
Harada T
(2)
Kigawa T
(2)
Koshiba S
(2)
Pugh DJ
(2)
Pugh DJR
(2)
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
(2)
Rees DJ
(2)
Rees DJG
(2)
Tochio N
(2)
Watanabe S
(2)
Yokoyama S
(2)
Abe H
(1)
Amarasinghe GK
(1)
Anantpadma M
(1)
Arnett E
(1)
Atkinson RA
(1)
Basler CF
(1)
Batra J
(1)
Chibi M
(1)
Davey RA
(1)
Haas P
(1)
Hassem F
(1)
Hoffmann E
(1)
Hultquist JF
(1)
Jang GM
(1)
Kaake R
(1)
Kappo MA
(1)
Krogan NJ
(1)
LaCount DJ
(1)
Leung DW
(1)
Liu D
(1)
Luthra P
(1)
Lutya PT
(1)
McKenzie JM
(1)
Mckenzie JM
(1)
Miyamoto K
(1)
Moolman-Smook JC
(1)
Mulaudzi T
(1)
Muleya V
(1)
Ohnishi S
(1)
Poole JO
(1)
Reyes A
(1)
Satkamp L
(1)
Sato M
(1)
Schlesinger LS
(1)
Schmidt CB
(1)
Schwarz TM
(1)
Shtanko O
(1)
Small GI
(1)
Tomizawa T
(1)
Von Dollen J
(1)
 
Homo / hetero assembly  (2)
homo
(4)
hetero
(1)
 
Assembly composition  (2)
protein structure
(4)
protein/protein complex
(1)
 
Assembly polymer count  (2)
monomer
(3)
dimer
(2)
 
Resolution distribution
1.0 - 1.5
(1)
 
Release year distribution
2005 - 2010
(3)
2010 - 2015
(1)
2015 - 2020
(1)
 
Journal  (4)
To be published
(2)
BMC Struct Biol
(1)
Cell
(1)
J Biol Chem
(1)
 
Macromolecules
Organism superkingdom  (1)
Eukaryota
(5)
 
Organism name  (1)
Homo sapiens
(5)
 
Molecule name  (8)
E3 ubiquitin-protein ligase RBBP6
(5)
Proliferation potential-related protein
(5)
Protein P2P-R
(5)
RBQ-1
(5)
RING-type E3 ubiquitin transferase RBBP6
(5)
Retinoblastoma-binding Q protein 1
(5)
Retinoblastoma-binding protein 6
(5)
p53-associated cellular protein of testis
(5)
 
Molecule type  (1)
Protein
(5)
 
Gene names  (5)
My038
(5)
P2PR
(5)
PACT
(5)
RBBP6
(5)
RBQ1
(5)
 
Interacting Molecules  (1)
Transcriptional activator VP30
(1)
 
Interacting ligands  (1)
ZN : ZINC ION
(3)
 
Function and Biology
EC number / name  (1)
2.3.2.27 : RING-type E3 ubiquitin transferase
(5)
 
Biological function  (4)
ubiquitin protein ligase activity
(4)
zinc ion binding
(2)
nucleic acid binding
(1)
ubiquitin-protein transferase activity
(1)
 
Biological process  (2)
mRNA processing
(4)
protein ubiquitination
(4)
 
Sequence and Structure classification
CATH class  (2)
Alpha Beta
(3)
Few Secondary Structures
(1)
 
CATH topology  (3)
Herpes Virus-1
(2)
HIV-1 Nucleocapsid Protein
(1)
Ubiquitin-like (UB roll)
(1)
 
Pfam accession / name  (3)
PF04564 : U-box
(2)
PF08783 : DWNN
(1)
PF13696 : zf-CCHC_2
(1)
 
Experimental Information
Diffraction protocol  (1)
Single wavelength
(1)
 
Diffraction radiation source type  (1)
Synchrotron
(1)
 
Diffraction source  (1)
ALS BEAMLINE 4.2.2
(1)
 
Synchrotron site  (1)
ALS
(1)
 
Diffraction detector type  (1)
CCD
(1)
 
Refinement software  (1)
REFMAC
(1)
 
NMR
NMR software packages  (8)
CYANA
(4)
NMRView
(4)
CNS
(2)
KUJIRA
(2)
NMRPipe
(2)
XwinNMR
(2)
CANDID
(1)
RECOORD
(1)
 
NMR Field Strength
500.0 - 600
(2)
600.0 - 700
(2)
700.0 - 800
(2)
800.0 - 900
(2)
 
Representative Structures
Representative Structures
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95%
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30%
Entries 1 to 5 of 5
Entries 1 to 5 of 5
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Crystal structure of Ebola virus VP30 C-terminus/RBBP6 peptide complex
Liu D, Small GI, Leung DW, Amarasinghe GK
Cell (2018) [PMID: 30550789  ]
Assembly composition: protein/protein complex
Bound ligands: CA    CA   
Assembly name: E3 ubiquitin-protein ligase RBBP6 and Transcriptional activator VP30 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-181206 (Preferred)   search this ID
PDBe-KB: Q7Z6E9    Q77DJ5   
X-ray diffraction
1.5Å resolution
Released: 12 Dec 2018
Model geometry
Fit model/data
6e5x
6e5x
6e5x
Solution NMR structure of the DWNN domain from human RBBP6
Pugh DJR, Ab E, Faro A, Lutya PT, Hoffmann E, Rees DJG
BMC Struct Biol (2006) [PMID: 16396680  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: E3 ubiquitin-protein ligase RBBP6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-182290 (Preferred)   search this ID
PDBe-KB: Q7Z6E9   
Solution NMR
Released: 19 Jan 2006
Model geometry
Fit model/data
Data not analysed
2c7h
2c7h
2c7h
Solution structure of the Ring finger of human Retinoblastoma-binding protein 6
Abe H, Miyamoto K, Tochio N, Tomizawa T, Koshiba S, Harada T, Watanabe S, Kigawa T, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: ZN    ZN   
Assembly name: E3 ubiquitin-protein ligase RBBP6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-182290 (Preferred)   search this ID
PDBe-KB: Q7Z6E9   
Solution NMR
Released: 8 Apr 2008
Model geometry
Fit model/data
Data not analysed
2yur
2yur
2yur
Solution structure of the zinc finger CCHC domain from the human retinoblastoma-binding protein 6 (Retinoblastoma-binding Q protein 1, RBQ-1)
Ohnishi S, Sato M, Tochio N, Koshiba S, Harada T, Watanabe S, Kigawa T, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: ZN    ZN   
Assembly name: E3 ubiquitin-protein ligase RBBP6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-182290 (Preferred)   search this ID
PDBe-KB: Q7Z6E9   
Solution NMR
Released: 9 Oct 2007
Model geometry
Fit model/data
Data not deposited
2ysa
2ysa
2ysa
Solution structure of the RING finger-like domain of Retinoblastoma Binding Protein-6 (RBBP6)
Kappo MA, Ab E, Atkinson RA, Faro A, Muleya V, Mulaudzi T, Poole JO, McKenzie JM, Pugh DJR
J Biol Chem (2012) [PMID: 22130672  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: ZN    ZN   
Assembly name: E3 ubiquitin-protein ligase RBBP6 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-182291 (Preferred)   search this ID
PDBe-KB: Q7Z6E9   
Solution NMR
Released: 7 Dec 2011
Model geometry
Fit model/data
Data not analysed
3ztg
3ztg
3ztg
Entries 1 to 5 of 5
Entries 1 to 5 of 5