Uniprot accession / id : Q64127  OR   Uniprot accession / id : O15164
 
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Entry Information
Entry status  (1)
REL
(19)
 
Experimental methods  (2)
X-ray diffraction
(18)
Solution NMR
(1)
 
Authors  (89)
Barton MC
(13)
Shi X
(13)
Andersen JN
(8)
Bardenhagen JP
(8)
Draetta G
(8)
Geck Do M
(8)
Jones P
(8)
Kost-Alimova M
(8)
Leo E
(8)
Liu G
(8)
Palmer W
(8)
Palmer WS
(8)
Petrocchi A
(8)
Poncet-Montange G
(8)
Reyna N
(8)
Shepard HE
(8)
Subramanian G
(8)
Theroff J
(8)
Tieu TN
(8)
Toniatti C
(8)
Yau A
(8)
Zhan Y
(8)
Zhao S
(8)
Akdemir KC
(5)
Aronow B
(5)
Fischle W
(5)
Gozani O
(5)
Hung MC
(5)
Patel DJ
(5)
Plunkett W
(5)
Schwarzer D
(5)
Tsai CY
(5)
Tsai WW
(5)
Wang Z
(5)
Winter S
(5)
Xia W
(5)
Yiu TT
(5)
Bao H
(3)
Gao J
(3)
Jiang Y
(3)
Li F
(3)
Liu J
(3)
Ma R
(3)
Ruan K
(3)
Wu J
(3)
Zhang S
(3)
Arrowsmith CH
(1)
Baronio R
(1)
Bennett JM
(1)
Bobby R
(1)
Bountra C
(1)
Brennan PE
(1)
Clark PG
(1)
Clark PGK
(1)
Daniels DL
(1)
Dixon DJ
(1)
Edwards AM
(1)
Fedorov O
(1)
Hitchin JR
(1)
Kaderli J
(1)
Kishishita S
(1)
Knapp S
(1)
Krojer T
(1)
Mendez J
(1)
Milbradt AG
(1)
Monteiro OP
(1)
Muller S
(1)
Murayama K
(1)
Nunez-Alonso G
(1)
Orts J
(1)
Packer MJ
(1)
Picaud S
(1)
RIKEN Structural Genomics/Proteomics Initiative (RSGI)
(1)
Rogers CM
(1)
Rossi E
(1)
Sarda S
(1)
Shirouzu M
(1)
Singleton DC
(1)
Structural Genomics Consortium (SGC)
(1)
Tallant C
(1)
Terada T
(1)
Torres F
(1)
Uchikubo-Kamo T
(1)
Vieira LC
(1)
Vieira LCC
(1)
Walker G
(1)
Walser R
(1)
Yokoyama S
(1)
von Delft F
(1)
 
Homo / hetero assembly  (2)
homo
(15)
hetero
(4)
 
Assembly composition  (2)
protein structure
(15)
protein/protein complex
(4)
 
Assembly polymer count  (2)
monomer
(14)
dimer
(5)
 
Resolution distribution
1.0 - 1.5
(1)
1.5 - 2
(13)
2.0 - 2.5
(4)
 
Release year distribution
2005 - 2010
(6)
2010 - 2015
(14)
2015 - 2020
(12)
2020 - 2025
(1)
 
Journal  (4)
J Med Chem
(9)
Nature
(5)
FEBS J
(3)
To be published
(2)
 
Macromolecules
Organism superkingdom  (1)
Eukaryota
(19)
 
Organism name  (1)
Homo sapiens
(19)
 
Molecule name  (6)
E3 ubiquitin-protein ligase TRIM24
(19)
RING finger protein 82
(19)
RING-type E3 ubiquitin transferase TIF1-alpha
(19)
TIF1-alpha
(19)
Transcription intermediary factor 1-alpha
(19)
Tripartite motif-containing protein 24
(19)
 
Molecule type  (1)
Protein
(19)
 
Gene names  (4)
RNF82
(19)
TIF1
(19)
TIF1A
(19)
TRIM24
(19)
 
Interacting Molecules  (2)
Histone H3.1
(3)
Histone H4
(1)
 
Interacting ligands  (18)
ZN : ZINC ION
(17)
DMS : DIMETHYL SULFOXIDE
(5)
GOL : GLYCEROL
(4)
SO4 : SULFATE ION
(4)
1PE : PENTAETHYLENE GLYCOL
(1)
4A7 : 2,4-dimethoxy-N-(1-methyl-2-oxo-1,2,3,4-tetrahydroquinolin-6-yl)benzenesulfonamide
(1)
4A8 : N-(1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzimidazol-5-yl)-4-methoxybenzenesulfonamide
(1)
4AE : N-[6-(4-methoxyphenoxy)-1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzimidazol-5-yl]benzenesulfonamide
(1)
4BJ : N-{6-[3-(benzyloxy)phenoxy]-1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzimidazol-5-yl}-3,4-dimethoxybenzenesulfonamide
(1)
4BK : N-{1,3-dimethyl-6-[3-(2-methylpropoxy)phenoxy]-2-oxo-2,3-dihydro-1H-benzimidazol-5-yl}-1,2-dimethyl-1H-imidazole-4-sulfonamide
(1)
4BV : N-(1,3-dimethyl-2-oxo-6-{3-[(3S)-tetrahydrofuran-3-ylmethoxy]phenoxy}-2,3-dihydro-1H-benzimidazol-5-yl)-1-methyl-1H-imidazole-4-sulfonamide
(1)
4C1 : N-(6-{3-[4-(dimethylamino)butoxy]-5-propoxyphenoxy}-1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzimidazol-5-yl)-3,4-dimethoxybenzenesulfonamide
(1)
4CN : 1-methyl-5-(2-methyl-1,3-thiazol-4-yl)-1,3-dihydro-2H-indol-2-one
(1)
4QH : 3,4-dimethoxy-N-[6-(4-methoxyphenoxy)-1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzimidazol-5-yl]benzenesulfonamide
(1)
6KT : 2-amino-1,3-benzothiazole-6-carboxamide
(1)
7FF : methyl 6-azanyl-3,4-dihydro-2H-quinoline-1-carboxylate
(1)
7FU : 2-Hydrazino-1,3-benzothiazole-6-carbohydrazide
(1)
T52 : N-{6-[3-(4-Aminobutoxy)-5-propoxyphenoxy]-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-3,4-dimethoxybenzene-1-sulfonamide
(1)
 
Function and Biology
EC number / name  (1)
2.3.2.27 : RING-type E3 ubiquitin transferase
(19)
 
Sequence and Structure classification
CATH class  (2)
Mainly Alpha
(18)
Alpha Beta
(17)
 
CATH topology  (2)
Histone Acetyltransferase; Chain A
(18)
Herpes Virus-1
(17)
 
Pfam accession / name  (2)
PF00439 : Bromodomain
(19)
PF00628 : PHD
(17)
 
Experimental Information
Diffraction protocol  (2)
Single wavelength
(17)
MAD
(1)
 
Diffraction radiation source type  (1)
Synchrotron
(18)
 
Diffraction source  (6)
ALS BEAMLINE 8.3.1
(8)
APS BEAMLINE 24-ID-E
(4)
SSRF BEAMLINE BL19U1
(3)
DIAMOND BEAMLINE I02
(1)
NSLS BEAMLINE X29A
(1)
SPRING-8 BEAMLINE BL26B2
(1)
 
Synchrotron site  (6)
ALS
(8)
APS
(4)
SSRF
(3)
Diamond
(1)
NSLS
(1)
SPring-8
(1)
 
Diffraction detector type  (2)
CCD
(14)
Pixel
(4)
 
Refinement software  (3)
REFMAC
(9)
CNS
(6)
PHENIX
(3)
 
NMR
NMR software packages  (3)
CARA
(1)
CNS
(1)
CYANA
(1)
 
NMR Field Strength
700.0 - 800
(1)
800.0 - 900
(1)
 
Representative Structures
Representative Structures
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Entries 1 to 10 of 19
Entries 1 to 10 of 19
 Select all entries on this page
Complex structure of TRIM24 PHD-bromodomain and inhibitor 1
Liu J
FEBS J (2017) [PMID: 28207202  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: ZN    DMS    7FF    DMS    ZN   
Assembly name: Transcription intermediary factor 1-alpha (Preferred)   search this complex
PDBe complex ID: PDB-CPX-127337 (Preferred)   search this ID
PDBe-KB: O15164   
X-ray diffraction
1.951Å resolution
Released: 22 Feb 2017
Model geometry
Fit model/data
5h1t
5h1t
5h1t
Complex structure of TRIM24 PHD-bromodomain and inhibitor 2
Liu J
FEBS J (2017) [PMID: 28207202  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: 6KT    6KT    ZN    DMS    DMS    ZN   
Assembly name: Transcription intermediary factor 1-alpha (Preferred)   search this complex
PDBe complex ID: PDB-CPX-127337 (Preferred)   search this ID
PDBe-KB: O15164   
X-ray diffraction
1.901Å resolution
Released: 22 Feb 2017
Model geometry
Fit model/data
5h1u
5h1u
5h1u
Complex structure of TRIM24 PHD-bromodomain and inhibitor 6
Liu J
FEBS J (2017) [PMID: 28207202  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: ZN    DMS    DMS    ZN    7FU   
Assembly name: Transcription intermediary factor 1-alpha (Preferred)   search this complex
PDBe complex ID: PDB-CPX-127337 (Preferred)   search this ID
PDBe-KB: O15164   
X-ray diffraction
2.002Å resolution
Released: 22 Feb 2017
Model geometry
Fit model/data
5h1v
5h1v
5h1v
NMR2 structure of TRIM24-BD in complex with a precursor of IACS-9571
Orts J, Torres F, Milbradt AG, Walser R
J Med Chem (2022) [PMID: 35357834  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: T52   
Assembly name: Transcription intermediary factor 1-alpha (Preferred)   search this complex
PDBe complex ID: PDB-CPX-127337 (Preferred)   search this ID
PDBe-KB: O15164   
Solution NMR
Released: 12 Jan 2022
Model geometry
Fit model/data
Data not analysed
7b9x
7b9x
7b9x
Crystal structure of TRIM24 PHD-bromodomain complexed with N-{6-[3-(benzyloxy)phenoxy]-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-3,4-dimethoxybenzene-1-sulfonamide (7b)
Poncet-Montange G, Palmer W, Jones P
J Med Chem (2016) [PMID: 26061247  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: GOL    ZN    4BJ    4BJ    SO4    ZN   
Assembly name: Transcription intermediary factor 1-alpha (Preferred)   search this complex
PDBe complex ID: PDB-CPX-127337 (Preferred)   search this ID
PDBe-KB: O15164   
X-ray diffraction
1.46Å resolution
Released: 24 Jun 2015
Model geometry
Fit model/data
4ybm
4ybm
4ybm
Crystal structure of TRIM24 PHD-Bromo complexed with H3(13-32)K23ac peptide
Wang Z, Patel DJ
Nature (2010) [PMID: 21164480  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Bound ligands: BTN    ZN    ZN    BTN   
Modified residues: ALY    ALY   
Assembly name: Transcription intermediary factor 1-alpha and Histone H3.1 (Preferred)   search this complex
PDBe complex ID: PDB-CPX-127339 (Preferred)   search this ID
PDBe-KB: O15164    P68431   
X-ray diffraction
1.9Å resolution
Released: 15 Dec 2010
Model geometry
Fit model/data
3o34
3o34
3o34
Crystal structure of TRIM24 PHD-Bromo complexed with H4(14-19)K16ac peptide
Wang Z, Patel DJ
Nature (2010) [PMID: 21164480  ]
Source organism: Homo sapiens  
Assembly composition: protein/protein complex
Bound ligands: ZN    ZN   
Modified residues: ALY    ALY   
Assembly name: Histone H4 and Transcription intermediary factor 1-alpha (Preferred)   search this complex
PDBe complex ID: PDB-CPX-127338 (Preferred)   search this ID
PDBe-KB: O15164    P62805   
X-ray diffraction
1.7Å resolution
Released: 15 Dec 2010
Model geometry
Fit model/data
3o36
3o36
3o36
Crystal structure of TRIM24 PHD-bromodomain complexed with N-[6-(4-methoxyphenoxy)-1,3-dimethyl-2-oxo-2,3-dihydro-1H-1,3-benzodiazol-5-yl]benzenesulfonamide (5g)
Poncet-Montange G, Palmer W, Jones P
J Med Chem (2016) [PMID: 26061247  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: 4AE    GOL    ZN    SO4    ZN    4AE   
Assembly name: Transcription intermediary factor 1-alpha (Preferred)   search this complex
PDBe complex ID: PDB-CPX-127337 (Preferred)   search this ID
PDBe-KB: O15164   
X-ray diffraction
2.25Å resolution
Released: 24 Jun 2015
Model geometry
Fit model/data
4yax
4yax
4yax
Crystal structure of TRIM24 PHD-bromodomain complexed with N-{1,3-dimethyl-2-oxo-6-[3-(oxolan-3-ylmethoxy)phenoxy]-2,3-dihydro-1H-1,3-benzodiazol-5-yl}-1-methyl-1H-imidazole-4-sulfonamide (7l)
Poncet-Montange G, Palmer W, Jones P
J Med Chem (2016) [PMID: 26061247  ]
Source organism: Homo sapiens  
Assembly composition: protein only structure
Bound ligands: 4BV    ZN    DMS    DMS    ZN    4BV   
Assembly name: Transcription intermediary factor 1-alpha (Preferred)   search this complex
PDBe complex ID: PDB-CPX-127337 (Preferred)   search this ID
PDBe-KB: O15164   
X-ray diffraction
1.82Å resolution
Released: 24 Jun 2015
Model geometry
Fit model/data
4ybt
4ybt
4ybt
Crystal structure of human bromodomain protein
Kishishita S, Uchikubo-Kamo T, Murayama K, Terada T, Shirouzu M, Yokoyama S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
To be published
Source organism: Homo sapiens  
Assembly composition: protein only structure
Assembly name: Transcription intermediary factor 1-alpha (Preferred)   search this complex
PDBe complex ID: PDB-CPX-127340 (Preferred)   search this ID
PDBe-KB: O15164   
X-ray diffraction
2.5Å resolution
Released: 6 May 2008
Model geometry
Fit model/data
2yyn
2yyn
2yyn
Entries 1 to 10 of 19
Entries 1 to 10 of 19